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sync last bits with main trunk
2009-09-17
c
j
fields
s
y
nc last bits
with main tru
n
k
commit
|
commitdiff
|
tree
2009-09-16
c
jfi
e
l
ds
b
u
mp to alph
a
1
commit
|
commitdiff
|
tree
2009-09-16
cjfields
sync w
i
th main
t
runk
commit
|
commitdiff
|
tree
2009-09-15
cjfields
s
ync w
i
th main tr
u
nk completely
(a few t
e
sts fail
i
ng)
commit
|
commitdiff
|
tree
2009-09-15
cjfiel
d
s
sy
n
c with trunk
(
to r15946)
commit
|
commitdiff
|
tree
2009-09-15
c
j
fie
l
d
s
sync w
i
th trunk to r15684
commit
|
commitdiff
|
tree
2009-04-14
c
j
f
i
e
lds
sync w/ main trun
k
commit
|
commitdiff
|
tree
2009-02-05
cjfiel
d
s
sync wi
t
h
m
ain trunk HEAD
commit
|
commitdiff
|
tree
2009-01-24
cjfield
s
* re
v
ert r15441
for the time
bein
g
(SeqFeat
u
r
e
.
t t
e
s
ts
.
.
.
commit
|
commitdiff
|
tree
2009-01-24
cjfie
l
d
s
Bump version to 1
.
6 fo
r
final release
.
commit
|
commitdiff
|
tree
2009-01-21
cjfiel
d
s
s
y
nc la
s
t
commit
commit
|
commitdiff
|
tree
2009-01-21
cjfi
e
l
d
s
* sync wit
h
trun
k
commit
|
commitdiff
|
tree
2009-01-21
cjfields
*
sync with trunk
commit
|
commitdiff
|
tree
2009-01-21
cjf
i
eld
s
* delete Bio::DB::Seq
F
eature::Stor
e
::
D
B
I::Pg pe
r
Scott
.
.
.
commit
|
commitdiff
|
tree
2009-01-20
cjfields
sync wi
t
h ma
i
n trunk
commit
|
commitdiff
|
tree
2009-01-16
cjfi
e
lds
Inc
.
R
C
ver
s
ion
commit
|
commitdiff
|
tree
2009-01-16
cjfields
carry over test
fixe
s
from trunk
commit
|
commitdiff
|
tree
2009-01-16
cjfields
C
a
r
ry over test
c
h
a
nge from main
t
runk
commit
|
commitdiff
|
tree
2009-01-16
cjfiel
d
s
Sync with main tr
u
nk
commit
|
commitdiff
|
tree
2009-01-13
cjfields
Sync with main t
r
unk
commit
|
commitdiff
|
tree
2009-01-13
cjfiel
d
s
Sync wi
t
h main trunk
commit
|
commitdiff
|
tree
2009-01-06
cjfields
Sync with t
r
unk
.
This wi
l
l
a
p
pear
in f
i
nal release
.
commit
|
commitdiff
|
tree
2009-01-06
c
j
fields
Resolve conf
l
ict (can't di
r
ectl
y
merge
since trunk
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
c
jfields
S
y
n
c that last bit with
trunk
.
I'll have to
m
erge
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
cjfields
Sync wi
t
h trunk
commit
|
commitdiff
|
tree
2009-01-05
cjfields
Bu
m
p RC to
2
;
will
t
ag
,
ba
g
, and ship
t
omorr
o
w after
.
.
.
commit
|
commitdiff
|
tree
2009-01-05
c
j
f
ields
Sync
w
i
t
h
t
runk
commit
|
commitdiff
|
tree
2009-01-04
cjfield
s
s
ync with trunk
commit
|
commitdiff
|
tree
2009-01-02
cjfi
e
lds
sync from
trunk
commit
|
commitdiff
|
tree
2009-01-02
cjfields
sy
n
c last com
m
it
commit
|
commitdiff
|
tree
2009-01-02
cjfield
s
sy
n
c with HEAD
commit
|
commitdiff
|
tree
2009-01-02
cjfields
Remove t/Graphics
commit
|
commitdiff
|
tree
2009-01-02
c
j
fields
Remove Bio::Graphic
s
examples and scripts
commit
|
commitdiff
|
tree
2008-12-26
c
j
f
i
elds
empty directory
commit
|
commitdiff
|
tree
2008-12-26
cjfields
Emp
t
y directory
commit
|
commitdiff
|
tree
2008-12-26
cjfields
empty directory
commit
|
commitdiff
|
tree
2008-12-26
cj
f
ields
s
ync with trunk
commit
|
commitdiff
|
tree
2008-12-24
cjfields
small
c
l
a
rificatio
n
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Add list of
b
ugs
sl
a
t
e
d for the 1
.
6
.
x series
commit
|
commitdiff
|
tree
2008-12-24
cjfi
e
lds
Updates for R
C
1
commit
|
commitdiff
|
tree
2008-12-24
c
jfields
rem
o
ve Microarray deps
commit
|
commitdiff
|
tree
2008-12-24
cj
f
ields
Small
fi
x
for tests JIC there is a network error
commit
|
commitdiff
|
tree
2008-12-24
cjfi
e
lds
Sync branch wit
h
trunk
commit
|
commitdiff
|
tree
2008-12-24
c
j
field
s
R
em
o
ve Bio::Microarray from branch (
s
till in
d
e
velo
p
ment
.
.
.
commit
|
commitdiff
|
tree
2008-12-24
cjfields
R
e
move
(
m
erge didn't remove this fo
r
some reason)
commit
|
commitdiff
|
tree
2008-12-24
cjfie
l
ds
Remove (merge didn't
r
emove this
f
or so
m
e
r
eason)
commit
|
commitdiff
|
tree
2008-12-22
cjfields
s
y
n
c
tr
u
n
k
wit
h
b
r
anch
commit
|
commitdiff
|
tree
2008-12-20
cjfields
5
.
6
.
1
is min
p
erl version required for all core mod
u
les now
commit
|
commitdiff
|
tree
2008-12-19
cjfields
update NAMES
commit
|
commitdiff
|
tree
2008-12-19
c
jfield
s
s
m
a
l
l typ
o
commit
|
commitdiff
|
tree
2008-12-18
cjfields
typo
commit
|
commitdiff
|
tree
2008-12-18
c
j
fields
[bug 2
7
14]
commit
|
commitdiff
|
tree
2008-12-17
cjfie
l
d
s
fix test
numb
e
r
commit
|
commitdiff
|
tree
2008-12-17
cjfield
s
upd
a
te
T
est::War
n
(fixes
Q
ual
.
t test probl
e
m
s w
i
t
h
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfields
missed one
commit
|
commitdiff
|
tree
2008-12-16
c
jf
i
elds
EUtilities
r
e
m
o
te tests
b
a
c
k o
n
line (simple te
s
ts only)
commit
|
commitdiff
|
tree
2008-12-16
cjfi
e
lds
EUtilities remote tes
t
s back online (s
i
mple tests only)
commit
|
commitdiff
|
tree
2008-12-16
cjf
i
e
l
ds
You mu
s
t actual
l
y test data
i
f
y
ou want
thi
s
m
o
dule
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
c
j
f
ields
Don't use
p
rint!
Changing to
$self->deb
u
g
or commenting
out
commit
|
commitdiff
|
tree
2008-12-16
cj
f
ields
Bio::
G
raph deprecated
i
n 1
.
6
commit
|
commitdiff
|
tree
2008-12-16
cjfields
s
t
i
f
le war
n
ings wh
e
n p
a
ssin
g
str
i
ng instead of i
n
tege
r
commit
|
commitdiff
|
tree
2008-12-16
cjf
i
elds
hash
r
ef, not
array r
e
f
commit
|
commitdiff
|
tree
2008-12-16
c
jfields
[bug 263
7
]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug
2
637]
commit
|
commitdiff
|
tree
2008-12-16
cjfi
e
lds
[bug 2
6
37]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[
b
ug 2637]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
[
bug
2712]
commit
|
commitdiff
|
tree
2008-12-15
c
j
f
i
el
d
s
scores
commit
|
commitdiff
|
tree
2008-12-15
cjfield
s
remaini
n
g t
e
sts for Bio::
T
ool:
:
E
Ut
i
lities
commit
|
commitdiff
|
tree
2008-12-15
cjfields
m
o
re test
data
commit
|
commitdiff
|
tree
2008-12-15
cjf
i
elds
U
p
dat
e
s:
commit
|
commitdiff
|
tree
2008-12-13
cjfields
i
n
itial batch of EUtilPara
m
eters t
e
sts
commit
|
commitdiff
|
tree
2008-12-13
cjfields
einfo tests
commit
|
commitdiff
|
tree
2008-12-12
cj
f
i
e
l
ds
some EUtilities tes
t
s
(p
a
rsing from files)
commit
|
commitdiff
|
tree
2008-12-12
cjfields
some test data for Bio::Tools
:
:EU
t
ilities
commit
|
commitdiff
|
tree
2008-12-12
cjf
i
elds
updates to EU
t
ili
t
ies (gettin
g
ready for docs, tests
.
.
.
commit
|
commitdiff
|
tree
2008-12-12
c
jf
i
e
l
d
s
Move EUtilParamet
e
rs to Tools (seems
more appropria
t
e
)
commit
|
commitdiff
|
tree
2008-12-11
c
jfie
l
d
s
f
i
x for bug w
h
en getting
c
ac
h
ed response wit
h
f
i
lename
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfields
small pointer to wiki pa
g
e
(will update along wit
h
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfields
small
update
commit
|
commitdiff
|
tree
2008-12-11
cjfields
upd
a
tes
commit
|
commitdiff
|
tree
2008-12-11
c
jf
i
elds
return, not 're
t
urn u
n
def'
commit
|
commitdiff
|
tree
2008-12-11
cjf
i
elds
ret
u
rn, not 'return undef'
commit
|
commitdiff
|
tree
2008-12-11
cj
f
ields
[
b
ug 26
9
9]
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[
bug 26
9
9]
commit
|
commitdiff
|
tree
2008-12-11
cjfield
s
[bug 2707]
commit
|
commitdiff
|
tree
2008-12-10
cjfields
Removing from HE
A
D (deprecated
f
or 1
.
6)
commit
|
commitdiff
|
tree
2008-12-10
cjfields
mini pod fix
commit
|
commitdiff
|
tree
2008-12-10
cjfie
l
ds
upda
t
e deprecatio
n
list
commit
|
commitdiff
|
tree
2008-12-10
c
j
fields
remove Bio::Graphics (sepa
r
ate package
n
ow)
commit
|
commitdiff
|
tree
2008-12-10
cj
f
ields
[bug 2
6
37]
commit
|
commitdiff
|
tree
2008-12-10
cjf
i
e
l
ds
Remove dependenc
i
e
s
for Bio::Graphics and deprecated
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Squash warning
commit
|
commitdiff
|
tree
2008-12-09
cjfields
diag(
)
o
n
ly on v
e
rbose
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Fix las
t
l
o
o
p
tests, move som
e
to ca
n
_ok
commit
|
commitdiff
|
tree
2008-12-09
cjf
i
elds
M
odif
y
to test new
t
emp c
l
asses an
d
e
n
sure that add
e
d
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfie
l
ds
update Mauricio's email
commit
|
commitdiff
|
tree
2008-12-08
cjfiel
d
s
U
pdate Roy's email
commit
|
commitdiff
|
tree
2008-12-08
cjfields
Roy's email (
a
nd bioperl
.
org
not bioperl
.
e
du)
commit
|
commitdiff
|
tree
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