Public Git Hosting - bioperl-live.git/commit

commit	7ed0a02986d4f5768d3f4c3b1777edaa26b09804
author	cjfields <cjfields@bioperl.org>
	Tue, 15 Sep 2009 21:34:07 +0000 (15 21:34 -0000)
committer	cjfields <cjfields@bioperl.org>
	Tue, 15 Sep 2009 21:34:07 +0000 (15 21:34 -0000)
tree	811d3b45520bb84fcd875f50eff504dfd8192e51	tree \| snapshot (tar.gz zip)
parent	28a60587e6b37d83bd4373aa4962743fe653b79b	commit \| diff

sync with trunk to r15684

svn path=/bioperl-live/branches/branch-1-6/; revision=16089

47 files changed:

Bio/DB/EUtilities.pm		diff \| blob \| blame \| history
Bio/DB/SeqFeature/Store.pm		diff \| blob \| blame \| history
Bio/DB/SeqFeature/Store/FeatureFileLoader.pm		diff \| blob \| blame \| history
Bio/DB/SeqFeature/Store/berkeleydb.pm		diff \| blob \| blame \| history
Bio/DB/SwissProt.pm		diff \| blob \| blame \| history
Bio/Matrix/IO/phylip.pm		diff \| blob \| blame \| history
Bio/PrimarySeqI.pm		diff \| blob \| blame \| history
Bio/Root/Utilities.pm		diff \| blob \| blame \| history
Bio/Search/SearchUtils.pm		diff \| blob \| blame \| history
Bio/SearchIO/Writer/GbrowseGFF.pm		diff \| blob \| blame \| history
Bio/SearchIO/Writer/HSPTableWriter.pm		diff \| blob \| blame \| history
Bio/SearchIO/blasttable.pm		diff \| blob \| blame \| history
Bio/Seq/LargePrimarySeq.pm		diff \| blob \| blame \| history
Bio/Seq/Quality.pm		diff \| blob \| blame \| history
Bio/SeqFeature/Generic.pm		diff \| blob \| blame \| history
Bio/SeqIO/Handler/GenericRichSeqHandler.pm		diff \| blob \| blame \| history
Bio/SeqIO/entrezgene.pm		diff \| blob \| blame \| history
Bio/SeqIO/fastq.pm		diff \| blob \| blame \| history
Bio/SeqIO/genbank.pm		diff \| blob \| blame \| history
Bio/SeqUtils.pm		diff \| blob \| blame \| history
Bio/SimpleAlign.pm		diff \| blob \| blame \| history
Bio/Tools/tRNAscanSE.pm		diff \| blob \| blame \| history
Bio/Tree/Node.pm		diff \| blob \| blame \| history
Bio/Tree/Statistics.pm		diff \| blob \| blame \| history
Build.PL		diff \| blob \| blame \| history
t/ClusterIO/ClusterIO.t		diff \| blob \| blame \| history
t/RemoteDB/DB.t	[deleted file]	blob \| blame \| history
t/RemoteDB/EntrezGene.t	[new file with mode: 0755]	blob
t/RemoteDB/GenBank.t	[new file with mode: 0755]	blob
t/RemoteDB/GenPept.t	[new file with mode: 0755]	blob
t/RemoteDB/MeSH.t	[new file with mode: 0755]	blob
t/RemoteDB/Query/GenBank.t	[new file with mode: 0755]	blob
t/RemoteDB/SwissProt.t	[new file with mode: 0755]	blob
t/SearchIO/Writer/GbrowseGFF.t	[moved from t/SearchIO/GbrowseGFF.t with 76% similarity]	diff \| blob \| blame \| history
t/SearchIO/Writer/HSPTableWriter.t	[new file with mode: 0755]	blob
t/SearchIO/blasttable.t		diff \| blob \| blame \| history
t/Seq/Quality.t		diff \| blob \| blame \| history
t/SeqFeature/SeqFeature.t		diff \| blob \| blame \| history
t/SeqIO/Handler.t		diff \| blob \| blame \| history
t/SeqIO/genbank.t		diff \| blob \| blame \| history
t/SeqTools/SeqUtils.t		diff \| blob \| blame \| history
t/Tools/Run/StandAloneBlast.t		diff \| blob \| blame \| history
t/Tree/TreeStatistics.t		diff \| blob \| blame \| history
t/data/P39765.gb	[new file with mode: 0644]	blob
t/data/ReseqChip_ExampleData.fasta	[deleted file]	blob \| blame \| history
t/data/ReseqChip_RefSeq.fasta	[deleted file]	blob \| blame \| history
t/data/ReseqChip_mtDNA_design_annotation_file_FINAL.xls	[deleted file]	blob \| blame \| history

BioPerl core

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