sync with main trunk
commit6316ca89f8aecc9fe0e2c5996182811432ed134a
authorcjfields <cjfields@bioperl.org>
Tue, 20 Jan 2009 05:18:29 +0000 (20 05:18 -0000)
committercjfields <cjfields@bioperl.org>
Tue, 20 Jan 2009 05:18:29 +0000 (20 05:18 -0000)
treec92aa2713acc845e63c341b450308bfd165b3cf4
parentc88a086e1b70b56816657ddbb3b40f642c3cf6d4
sync with main trunk

svn path=/bioperl-live/branches/branch-1-6/; revision=15407
27 files changed:
Bio/Annotation/AnnotationFactory.pm
Bio/Annotation/TagTree.pm
Bio/Assembly/IO/phrap.pm
Bio/Root/RootI.pm
Bio/Root/Test.pm
Build.PL
t/Annotation/Annotation.t
t/Assembly/Assembly.t
t/LocalDB/BioDBGFF.t
t/LocalDB/SeqFeature.t
t/RemoteDB/SeqRead_fail.t
t/Root/RootI.t
t/SearchIO/blast.t
t/SearchIO/blast_pull.t
t/SearchIO/blasttable.t
t/SearchIO/blastxml.t
t/SearchIO/erpin.t
t/SearchIO/fasta.t
t/SearchIO/hmmer.t
t/SearchIO/hmmer_pull.t
t/SearchIO/infernal.t
t/SearchIO/rnamotif.t
t/SeqIO/asciitree.t
t/SeqIO/phd.t
t/Tools/Match.t
t/Tools/Phylo/Gerp.t
t/Tree/TreeIO/phyloxml.t