Sync branch with trunk
commit5a1c2b72af7bb2424230d1eb5aafbc7677917c75
authorcjfields <cjfields@bioperl.org>
Wed, 24 Dec 2008 05:27:05 +0000 (24 05:27 -0000)
committercjfields <cjfields@bioperl.org>
Wed, 24 Dec 2008 05:27:05 +0000 (24 05:27 -0000)
tree125e991f3f64b8a7696bcf511bf54e362505a542
parentb06dc7a367c2daefcc7f9667f5daffc2fef6cecc
Sync branch with trunk

svn path=/bioperl-live/branches/branch-1-6/; revision=15257
32 files changed:
Bio/Biblio/IO.pm
Bio/DB/HIV.pm
Bio/DB/HIV/HIVQueryHelper.pm
Bio/DB/Query/HIVQuery.pm
Bio/DB/SeqFeature/Store/DBI/mysql.pm
Bio/DB/SeqFeature/Store/FeatureFileLoader.pm
Bio/FeatureIO.pm
Bio/Index/Abstract.pm
Bio/LiveSeq/IO/Loader.pm
Bio/Ontology/SimpleGOEngine/GraphAdaptor.pm [new file with mode: 0644]
Bio/Ontology/SimpleGOEngine/GraphAdaptor02.pm [new file with mode: 0644]
Bio/Root/IO.pm
Bio/SearchIO.pm
Bio/SeqFeature/SiRNA/Oligo.pm
Bio/SeqFeature/SiRNA/Pair.pm
Bio/SeqIO.pm
Bio/SeqIO/agave.pm
Bio/SeqIO/phd.pm
Bio/SeqIO/qual.pm
Bio/SeqIO/scf.pm
Bio/Structure/IO.pm
Bio/Tools/Lucy.pm
Bio/Tools/SiRNA.pm
Bio/Tools/SiRNA/Ruleset/saigo.pm
Bio/Tools/SiRNA/Ruleset/tuschl.pm
DEPENDENCIES
INSTALL
maintenance/dependencies.pl [new file with mode: 0644]
maintenance/deprecated.pl
t/RemoteDB/HIV/HIV.t
t/RemoteDB/HIV/HIVQuery.t
t/Tools/rnamotif.t