sync trunk with branch
commitd5c05fe759a38c421a29769054b02802ab0b3311
authorcjfields <cjfields@bioperl.org>
Mon, 22 Dec 2008 21:51:02 +0000 (22 21:51 -0000)
committercjfields <cjfields@bioperl.org>
Mon, 22 Dec 2008 21:51:02 +0000 (22 21:51 -0000)
tree28765c1527d810ad5ce2992822c0d92c33ed9262
parent8dba65798cce3142175d3873bb728b838418c254
sync trunk with branch

svn path=/bioperl-live/branches/branch-1-6/; revision=15231
23 files changed:
Bio/DB/NCBIHelper.pm
Bio/DB/Qual.pm
Bio/DB/SeqFeature/Store/FeatureFileLoader.pm
Bio/Factory/SeqAnalysisParserFactory.pm
Bio/Root/Build.pm
Bio/Root/Version.pm
Bio/Search/Iteration/GenericIteration.pm
Bio/Search/Result/BlastResult.pm
Bio/Search/Result/CrossMatchResult.pm
Bio/SeqFeature/Annotated.pm
Bio/Tools/ERPIN.pm
Bio/Tools/Infernal.pm
Bio/Tools/Phylo/PAML.pm
Bio/Tools/RNAMotif.pm
Bio/Tools/Run/RemoteBlast.pm
Bio/Tools/Run/StandAloneBlast.pm
Bio/Tools/Run/StandAloneNCBIBlast.pm
Bio/Tools/Run/StandAloneWUBlast.pm
Build.PL
DEPRECATED
examples/tk/hitdisplay.pl
maintenance/deprecated.pl [new file with mode: 0644]
t/Tools/Run/StandAloneBlast.t