sync with main trunk HEAD
commit17e262c01faa068baae46295cfff5d51e8efdce4
authorcjfields <cjfields@bioperl.org>
Thu, 5 Feb 2009 18:22:58 +0000 (5 18:22 -0000)
committercjfields <cjfields@bioperl.org>
Thu, 5 Feb 2009 18:22:58 +0000 (5 18:22 -0000)
tree7b2cd4ab46a0c158cb4ac0e7810b8fd324dde601
parent3d1cfa18a510e9fbb1b56462521966f5974e9b9b
sync with main trunk HEAD

svn path=/bioperl-live/branches/branch-1-6/; revision=15505
19 files changed:
Bio/Assembly/Tools/ContigSpectrum.pm
Bio/DB/Fasta.pm
Bio/DB/HIV/HIVQueryHelper.pm
Bio/DB/HIV/lanl-schema.xml
Bio/DB/Qual.pm
Bio/DB/Query/HIVQuery.pm
Bio/DB/SeqFeature/Store/DBI/mysql.pm
Bio/DB/SeqFeature/Store/LoadHelper.pm
Bio/Root/Build.pm
Bio/Root/Utilities.pm
Bio/Search/HSP/GenericHSP.pm
INSTALL
scripts/Bio-DB-GFF/genbank2gff3.PLS
scripts/DB-HIV/hivq.PLS [new file with mode: 0755]
t/Assembly/ContigSpectrum.t
t/LocalDB/Registry.t
t/Root/Utilities.t
t/Tools/pICalculator.t
t/data/test 2.txt [new file with mode: 0644]