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bump to alpha 1
2009-09-16
cjfiel
d
s
bu
m
p to alp
h
a 1
commit
|
commitdiff
|
tree
2009-09-16
cjfields
s
y
nc with m
a
in
trunk
commit
|
commitdiff
|
tree
2009-09-15
cjfields
sync
w
i
t
h
main tru
n
k
compl
e
tely (a f
e
w tests fa
i
ling)
commit
|
commitdiff
|
tree
2009-09-15
cjfields
sync with tr
u
nk (to r15946)
commit
|
commitdiff
|
tree
2009-09-15
cjfields
sync
w
i
th trunk to r15684
commit
|
commitdiff
|
tree
2009-04-14
cjfields
sync w/ mai
n
t
runk
commit
|
commitdiff
|
tree
2009-02-05
cjfi
e
lds
sync with main
trunk H
E
AD
commit
|
commitdiff
|
tree
2009-01-24
cjfields
* revert
r15441
for the time being (S
e
q
F
eature
.
t
tests
.
.
.
commit
|
commitdiff
|
tree
2009-01-24
cjf
i
e
lds
B
ump version to 1
.
6
for fi
n
a
l
release
.
commit
|
commitdiff
|
tree
2009-01-21
cjfield
s
s
y
nc
l
a
st commit
commit
|
commitdiff
|
tree
2009-01-21
cjfields
* sync wi
t
h trunk
commit
|
commitdiff
|
tree
2009-01-21
cjfield
s
*
sync with trunk
commit
|
commitdiff
|
tree
2009-01-21
cjfield
s
*
d
ele
t
e Bio::DB::SeqFea
t
ure::St
o
r
e
::
D
B
I::
P
g per Scott
.
.
.
commit
|
commitdiff
|
tree
2009-01-20
cjfields
sync with main tr
u
nk
commit
|
commitdiff
|
tree
2009-01-16
cjfields
Inc
.
RC v
e
rsion
commit
|
commitdiff
|
tree
2009-01-16
cjfie
l
ds
carry over t
e
st fixes
from tru
n
k
commit
|
commitdiff
|
tree
2009-01-16
cjfields
Carry ove
r
tes
t
c
hange from
m
ain trunk
commit
|
commitdiff
|
tree
2009-01-16
cj
f
ields
Sync
w
ith mai
n
tr
u
nk
commit
|
commitdiff
|
tree
2009-01-13
cjf
i
elds
Sync with main trunk
commit
|
commitdiff
|
tree
2009-01-13
cjf
i
elds
Sy
n
c
with main trunk
commit
|
commitdiff
|
tree
2009-01-06
cjfields
Sync with trunk
.
This will appe
a
r in f
i
n
al re
l
ease
.
commit
|
commitdiff
|
tree
2009-01-06
c
jfields
R
esolve c
o
nf
l
i
c
t (can't
d
irectly mer
g
e
since
tru
n
k
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
c
j
fie
l
ds
Sync that last bit with trunk
.
I
'll
h
ave
to merge
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
cjfields
Sync with trunk
commit
|
commitdiff
|
tree
2009-01-05
cjfie
l
ds
Bump R
C
to 2; wi
l
l tag, bag, and s
h
ip tomorrow
after
.
.
.
commit
|
commitdiff
|
tree
2009-01-05
cj
f
ields
Sync with trunk
commit
|
commitdiff
|
tree
2009-01-04
cjfields
sy
n
c w
i
t
h
trunk
commit
|
commitdiff
|
tree
2009-01-02
cjfie
l
ds
sync
f
rom trunk
commit
|
commitdiff
|
tree
2009-01-02
cjfi
e
lds
sync last commit
commit
|
commitdiff
|
tree
2009-01-02
cjf
i
el
d
s
s
yn
c
with HEAD
commit
|
commitdiff
|
tree
2009-01-02
cjfields
Remove t/Grap
h
i
cs
commit
|
commitdiff
|
tree
2009-01-02
cjfields
Re
m
ove Bio
:
:
G
r
aphics e
x
amples and scripts
commit
|
commitdiff
|
tree
2008-12-26
cjfields
empty directory
commit
|
commitdiff
|
tree
2008-12-26
c
jf
i
elds
Emp
t
y directo
r
y
commit
|
commitdiff
|
tree
2008-12-26
cjfie
l
ds
empty
d
irectory
commit
|
commitdiff
|
tree
2008-12-26
c
j
f
ields
sync with trunk
commit
|
commitdiff
|
tree
2008-12-24
c
jfield
s
small clarification
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Add list of bugs slated f
o
r
the 1
.
6
.
x series
commit
|
commitdiff
|
tree
2008-12-24
cjf
i
elds
Upda
t
es f
o
r
R
C1
commit
|
commitdiff
|
tree
2008-12-24
cjfiel
d
s
remo
v
e
Microar
r
ay deps
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Sm
a
ll fix
f
o
r
tests JIC
ther
e
is
a network error
commit
|
commitdiff
|
tree
2008-12-24
cjfiel
d
s
S
y
nc branch with trunk
commit
|
commitdiff
|
tree
2008-12-24
c
j
fields
Remov
e
Bio
:
:Micro
a
rray f
r
om branch (stil
l
in development
.
.
.
commit
|
commitdiff
|
tree
2008-12-24
cjfi
e
l
ds
Remove (merge
didn'
t
r
emove thi
s
fo
r
s
ome reason
)
commit
|
commitdiff
|
tree
2008-12-24
c
jfi
e
lds
Remove (
m
erge didn't r
e
move thi
s
for some reason)
commit
|
commitdiff
|
tree
2008-12-22
cjfield
s
sync trunk with br
a
nch
commit
|
commitdiff
|
tree
2008-12-20
cjfields
5
.
6
.
1 is min perl versio
n
re
q
uired for all core
modules n
o
w
commit
|
commitdiff
|
tree
2008-12-19
cjfields
update
N
A
M
ES
commit
|
commitdiff
|
tree
2008-12-19
cjfi
e
lds
s
m
a
l
l typo
commit
|
commitdiff
|
tree
2008-12-18
c
jfields
typo
commit
|
commitdiff
|
tree
2008-12-18
cjfields
[bug 2714]
commit
|
commitdiff
|
tree
2008-12-17
cj
f
ields
fix t
e
st number
commit
|
commitdiff
|
tree
2008-12-17
cjfields
update T
e
s
t::Warn (fixes Qua
l
.
t test
p
roblem
s
w
ith
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfields
missed one
commit
|
commitdiff
|
tree
2008-12-16
cjfields
E
U
tili
t
i
es remote tests
b
ack online (simple
test
s
only)
commit
|
commitdiff
|
tree
2008-12-16
cjfie
l
ds
EUtilities rem
o
t
e tests back online (
s
imple tests only)
commit
|
commitdiff
|
tree
2008-12-16
cj
f
ie
l
ds
Y
o
u
m
ust actuall
y
test data if
y
ou wan
t
this modu
l
e
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
c
jfi
e
lds
Don't use pr
i
n
t
!
Changing to $self-
>
debug or comment
i
ng out
commit
|
commitdiff
|
tree
2008-12-16
c
jfields
Bio::Graph deprecated in
1
.
6
commit
|
commitdiff
|
tree
2008-12-16
cjf
i
e
ld
s
stifle warn
i
ngs when passing string inste
a
d of integer
commit
|
commitdiff
|
tree
2008-12-16
cjfields
hash ref, not array ref
commit
|
commitdiff
|
tree
2008-12-16
cj
f
ields
[bug 26
3
7
]
commit
|
commitdiff
|
tree
2008-12-16
cj
f
ields
[bu
g
2
6
37]
commit
|
commitdiff
|
tree
2008-12-16
cjfield
s
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-16
cjfiel
d
s
[bug 2
6
3
7]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
[
bug 2637]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
[
bug 2712]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
sc
o
res
commit
|
commitdiff
|
tree
2008-12-15
cjfields
remaining tes
t
s for B
i
o::Tool::E
U
tili
t
ie
s
commit
|
commitdiff
|
tree
2008-12-15
c
j
f
ields
m
ore test da
t
a
commit
|
commitdiff
|
tree
2008-12-15
cjfields
U
p
da
t
es:
commit
|
commitdiff
|
tree
2008-12-13
cjfields
initia
l
batch
of EUtilPara
m
e
t
ers tests
commit
|
commitdiff
|
tree
2008-12-13
cjf
i
elds
e
info tests
commit
|
commitdiff
|
tree
2008-12-12
cjf
i
elds
some EUtilit
i
e
s
te
s
ts (parsi
n
g
f
rom files)
commit
|
commitdiff
|
tree
2008-12-12
cjfields
s
ome te
s
t data
f
or
B
i
o::Tools::EU
t
ilities
commit
|
commitdiff
|
tree
2008-12-12
cjfi
e
l
d
s
updates
t
o
EUtil
i
t
i
es (g
e
tting ready for
docs, test
s
.
.
.
commit
|
commitdiff
|
tree
2008-12-12
c
jf
i
el
d
s
Move EU
t
ilParameters to T
o
ols (see
m
s more appropriat
e
)
commit
|
commitdiff
|
tree
2008-12-11
c
j
fiel
d
s
fix for bug when gett
i
n
g cac
h
e
d
r
e
sponse with filena
m
e
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfi
e
l
d
s
small pointer
to
w
i
ki pa
g
e (will update along with
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfields
small
u
pdate
commit
|
commitdiff
|
tree
2008-12-11
c
j
f
i
el
d
s
updates
commit
|
commitdiff
|
tree
2008-12-11
cj
f
ields
return, not 'return undef'
commit
|
commitdiff
|
tree
2008-12-11
cj
f
i
elds
return, not 'retur
n
undef'
commit
|
commitdiff
|
tree
2008-12-11
cj
f
ields
[
bug
2699
]
commit
|
commitdiff
|
tree
2008-12-11
cjfiel
d
s
[bug 2
6
99]
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[bug
2707]
commit
|
commitdiff
|
tree
2008-12-10
c
j
fields
Removing from HEAD (deprecated for 1
.
6)
commit
|
commitdiff
|
tree
2008-12-10
cjfi
e
lds
mini
p
o
d f
i
x
commit
|
commitdiff
|
tree
2008-12-10
c
jfield
s
update deprecation list
commit
|
commitdiff
|
tree
2008-12-10
cjfields
remov
e
Bio::Graphi
c
s (separate pa
c
k
a
ge now
)
commit
|
commitdiff
|
tree
2008-12-10
cjfiel
d
s
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-10
cjfield
s
Remove
dependencies f
o
r
Bio::Grap
h
i
c
s and deprecated
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfie
l
ds
Squash warning
commit
|
commitdiff
|
tree
2008-12-09
cjfields
diag() only on ver
b
o
s
e
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Fi
x
last loop
tests, move som
e
to can_ok
commit
|
commitdiff
|
tree
2008-12-09
cjf
i
e
l
ds
Modify to
test new
temp
classes and
ensure that added
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
c
jfield
s
update
M
auricio'
s
email
commit
|
commitdiff
|
tree
2008-12-08
cjfield
s
U
p
date Roy's email
commit
|
commitdiff
|
tree
2008-12-08
c
j
fields
Roy's
email (and bioperl
.
org not bioperl
.
edu)
commit
|
commitdiff
|
tree
2008-12-08
c
jfi
e
lds
Updated emails
commit
|
commitdiff
|
tree
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