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sync with main trunk completely (a few tests failing)
2009-09-15
cjfields
s
ync
with ma
i
n t
r
unk
c
ompletely
(
a few tests fail
i
n
g
)
commit
|
commitdiff
|
tree
2009-09-15
c
jfi
e
lds
sync wit
h
trunk (to r
1
5
9
4
6)
commit
|
commitdiff
|
tree
2009-09-15
cjfield
s
sync with trunk to r15684
commit
|
commitdiff
|
tree
2009-04-14
c
j
fields
sync
w
/ main tr
u
nk
commit
|
commitdiff
|
tree
2009-02-05
cjfields
syn
c
wi
t
h
m
ain
t
runk HEAD
commit
|
commitdiff
|
tree
2009-01-24
cjfields
*
r
e
v
ert r154
4
1 for the time
b
ei
n
g (SeqFeature
.
t t
e
s
ts
.
.
.
commit
|
commitdiff
|
tree
2009-01-24
cjfields
Bump
v
er
s
ion
to 1
.
6
for final re
l
ease
.
commit
|
commitdiff
|
tree
2009-01-21
cjfields
sync last commit
commit
|
commitdiff
|
tree
2009-01-21
cjf
i
e
l
d
s
* sync wi
t
h trunk
commit
|
commitdiff
|
tree
2009-01-21
cjfields
* sync with trunk
commit
|
commitdiff
|
tree
2009-01-21
cjfi
e
lds
*
d
elete Bio::DB::SeqFeatu
r
e::
S
tore::D
B
I::Pg per Scott
.
.
.
commit
|
commitdiff
|
tree
2009-01-20
c
jfields
sync with m
a
in trunk
commit
|
commitdiff
|
tree
2009-01-16
cjfields
Inc
.
RC ve
r
s
i
on
commit
|
commitdiff
|
tree
2009-01-16
cjfields
carry over test
f
ixes from
trunk
commit
|
commitdiff
|
tree
2009-01-16
cjf
i
e
l
ds
Carry over test c
h
ange from m
a
in trunk
commit
|
commitdiff
|
tree
2009-01-16
cjfie
l
ds
Sync w
i
th
main trunk
commit
|
commitdiff
|
tree
2009-01-13
c
jfie
l
d
s
Sync with main tru
n
k
commit
|
commitdiff
|
tree
2009-01-13
cjfields
Syn
c
wi
t
h
main trunk
commit
|
commitdiff
|
tree
2009-01-06
cjf
i
el
d
s
S
yn
c
with trunk
.
This will appea
r
i
n
fina
l
re
l
ease
.
commit
|
commitdiff
|
tree
2009-01-06
c
jfields
Resolve conflict (can't directly merge since trunk
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
cjfields
S
ync
t
h
a
t
last bit with trunk
.
I'
l
l have to
merg
e
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
cjfiel
d
s
Sync with tr
u
n
k
commit
|
commitdiff
|
tree
2009-01-05
cjfields
B
u
mp RC to
2
;
w
ill tag, b
a
g, and ship tom
o
rrow after
.
.
.
commit
|
commitdiff
|
tree
2009-01-05
c
j
f
i
e
lds
Sync
with
trunk
commit
|
commitdiff
|
tree
2009-01-04
cjf
i
e
l
ds
sync w
i
t
h trun
k
commit
|
commitdiff
|
tree
2009-01-02
cjfields
sync from t
r
unk
commit
|
commitdiff
|
tree
2009-01-02
c
j
fields
sync la
s
t
c
ommit
commit
|
commitdiff
|
tree
2009-01-02
cjfields
sync
with HEAD
commit
|
commitdiff
|
tree
2009-01-02
c
jfields
Re
m
ove t/Graphics
commit
|
commitdiff
|
tree
2009-01-02
cjfields
Remove
B
io::Graphics ex
a
mples
and scripts
commit
|
commitdiff
|
tree
2008-12-26
c
jfields
empty d
i
re
c
tor
y
commit
|
commitdiff
|
tree
2008-12-26
cjfields
Em
p
t
y
directory
commit
|
commitdiff
|
tree
2008-12-26
cjfields
e
mpty
d
irec
t
ory
commit
|
commitdiff
|
tree
2008-12-26
cjfield
s
sync with
t
runk
commit
|
commitdiff
|
tree
2008-12-24
cj
f
ields
small
clarificatio
n
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Add list
of
bugs slated f
o
r th
e
1
.
6
.
x ser
i
es
commit
|
commitdiff
|
tree
2008-12-24
cjfields
U
p
dates for R
C
1
commit
|
commitdiff
|
tree
2008-12-24
cjfields
remove M
i
croarray deps
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Small fix for tests JIC there i
s
a netw
o
rk error
commit
|
commitdiff
|
tree
2008-12-24
c
j
f
ields
S
y
nc branch wit
h
trunk
commit
|
commitdiff
|
tree
2008-12-24
cjfield
s
R
e
m
ove
Bi
o
::Mic
r
oarr
a
y fr
o
m branch (still in development
.
.
.
commit
|
commitdiff
|
tree
2008-12-24
c
jfi
e
l
d
s
R
emove
(
me
r
ge
d
idn't remove this f
o
r some reaso
n
)
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Remove
(
m
e
rge didn't remove this for
s
o
m
e
re
a
son)
commit
|
commitdiff
|
tree
2008-12-22
cjfields
s
ync trunk with branc
h
commit
|
commitdiff
|
tree
2008-12-20
cjfields
5
.
6
.
1 i
s
min perl ve
r
sion req
u
ired for all
c
ore modules now
commit
|
commitdiff
|
tree
2008-12-19
cjf
i
elds
update NAMES
commit
|
commitdiff
|
tree
2008-12-19
cjfields
small typo
commit
|
commitdiff
|
tree
2008-12-18
cj
f
ields
typo
commit
|
commitdiff
|
tree
2008-12-18
cjfi
e
lds
[bug 2714
]
commit
|
commitdiff
|
tree
2008-12-17
cj
f
ields
f
i
x te
s
t number
commit
|
commitdiff
|
tree
2008-12-17
cjf
i
elds
upd
a
te
T
est::Warn (fixes Qual
.
t test
proble
m
s with
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfields
m
i
s
s
ed o
n
e
commit
|
commitdiff
|
tree
2008-12-16
cjfields
EUt
i
liti
e
s remo
t
e tests back online (simple tests only)
commit
|
commitdiff
|
tree
2008-12-16
cj
f
i
elds
EUt
i
lities remote tests b
a
ck online (simpl
e
tests only
)
commit
|
commitdiff
|
tree
2008-12-16
cjfields
You m
u
st actually test data if you w
a
nt this module
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfields
D
o
n
'
t use
p
rint! Chan
g
i
n
g t
o
$
s
elf->debug o
r
com
m
e
ntin
g
out
commit
|
commitdiff
|
tree
2008-12-16
cjfields
Bio::Graph
d
epre
c
ated
i
n
1
.
6
commit
|
commitdiff
|
tree
2008-12-16
cjfiel
d
s
stifle war
n
i
n
gs when passing str
i
ng in
s
t
e
ad of integer
commit
|
commitdiff
|
tree
2008-12-16
cjf
i
e
lds
hash
ref, not array ref
commit
|
commitdiff
|
tree
2008-12-16
cjfie
l
d
s
[bug 2637
]
commit
|
commitdiff
|
tree
2008-12-16
cjfield
s
[b
u
g 2637]
commit
|
commitdiff
|
tree
2008-12-16
cjf
i
elds
[bug 26
3
7]
commit
|
commitdiff
|
tree
2008-12-16
cj
f
i
elds
[bug
2
637]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
[
b
ug 26
3
7]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
[
b
ug 2712]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
scores
commit
|
commitdiff
|
tree
2008-12-15
cjfields
remain
i
ng test
s
fo
r
Bio::Too
l
::EUti
l
i
t
ie
s
commit
|
commitdiff
|
tree
2008-12-15
c
jfields
more test data
commit
|
commitdiff
|
tree
2008-12-15
cjfi
e
lds
Upda
t
es:
commit
|
commitdiff
|
tree
2008-12-13
c
jfie
l
d
s
initial
batch of
E
UtilParameter
s
tests
commit
|
commitdiff
|
tree
2008-12-13
cjf
i
elds
einfo tests
commit
|
commitdiff
|
tree
2008-12-12
c
j
fie
l
ds
s
o
me EUtilities tests (parsi
n
g from files)
commit
|
commitdiff
|
tree
2008-12-12
cjfiel
d
s
s
o
m
e
test dat
a
for Bio::Tool
s
::EUtilitie
s
commit
|
commitdiff
|
tree
2008-12-12
cjfields
upd
a
t
e
s
to EUtili
t
ies
(
ge
t
ting rea
d
y
f
o
r docs,
test
s
.
.
.
commit
|
commitdiff
|
tree
2008-12-12
cjfields
Move EUt
i
lParameter
s
to Tools
(seems more appro
p
ri
a
te)
commit
|
commitdiff
|
tree
2008-12-11
cjf
i
e
l
ds
fix for bug when get
t
ing cache
d
response
w
ith fil
e
nam
e
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfields
small pointer to wiki page
(will update
along with
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cj
f
ield
s
sma
l
l
update
commit
|
commitdiff
|
tree
2008-12-11
cj
f
ields
u
pdates
commit
|
commitdiff
|
tree
2008-12-11
cjfields
r
eturn, not 'retur
n
undef'
commit
|
commitdiff
|
tree
2008-12-11
cjfields
return
,
not 'retur
n
u
n
d
ef'
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[bug 2699]
commit
|
commitdiff
|
tree
2008-12-11
cjfield
s
[bug 2699]
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[bug 2707]
commit
|
commitdiff
|
tree
2008-12-10
c
j
fields
R
e
moving f
r
om
HEAD (deprecated
f
o
r
1
.
6)
commit
|
commitdiff
|
tree
2008-12-10
cjfields
mini pod fix
commit
|
commitdiff
|
tree
2008-12-10
cjfields
upda
t
e
deprecatio
n
lis
t
commit
|
commitdiff
|
tree
2008-12-10
cjfi
e
l
d
s
remove Bio
:
:
Graph
i
cs (s
e
pa
r
ate
packa
g
e now)
commit
|
commitdiff
|
tree
2008-12-10
cjfields
[bug 2
6
37]
commit
|
commitdiff
|
tree
2008-12-10
cjf
i
e
l
ds
R
e
move dependenc
i
es for Bio::Graphics
and deprecat
e
d
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cj
f
i
elds
Squash
warning
commit
|
commitdiff
|
tree
2008-12-09
cjfields
diag(
)
on
l
y on ver
b
os
e
commit
|
commitdiff
|
tree
2008-12-09
cjfi
e
lds
Fix last l
o
o
p
tests, move some to
can_ok
commit
|
commitdiff
|
tree
2008-12-09
cjf
i
elds
Modify t
o
test new temp
c
lasses and ensure tha
t
added
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cj
f
ie
l
ds
u
pdate Mauricio's
email
commit
|
commitdiff
|
tree
2008-12-08
cjfi
e
lds
Updat
e
Roy's email
commit
|
commitdiff
|
tree
2008-12-08
cjfiel
d
s
R
oy's email (and bioperl
.
o
r
g
n
o
t
bioperl
.
edu)
commit
|
commitdiff
|
tree
2008-12-08
cjf
i
elds
Updat
e
d emails
commit
|
commitdiff
|
tree
2008-12-07
c
jf
i
elds
[bu
g
2699
]
commit
|
commitdiff
|
tree
2008-12-05
cjfields
Ne
e
d to retrieve the tr
e
e for output
commit
|
commitdiff
|
tree
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