repo.or.cz
/
bioperl-live.git
/
search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
first
·
prev
·
next
sync with trunk to r15684
2009-09-15
cjfie
l
ds
sync w
i
th t
r
u
nk to r
1
5684
commit
|
commitdiff
|
tree
2009-04-14
c
j
fields
sync w/ mai
n
trun
k
commit
|
commitdiff
|
tree
2009-02-05
c
j
f
i
eld
s
sync with ma
i
n t
r
unk HEAD
commit
|
commitdiff
|
tree
2009-01-24
cjfield
s
* revert r
1
54
4
1 f
o
r the time
being (SeqFeat
u
r
e
.
t
tes
t
s
.
.
.
commit
|
commitdiff
|
tree
2009-01-24
c
jfield
s
Bump version t
o
1
.
6 for final re
l
ease
.
commit
|
commitdiff
|
tree
2009-01-21
cjf
i
elds
sync last commit
commit
|
commitdiff
|
tree
2009-01-21
c
j
f
ields
* s
y
nc wi
t
h trunk
commit
|
commitdiff
|
tree
2009-01-21
cjfie
l
d
s
* syn
c
with tru
n
k
commit
|
commitdiff
|
tree
2009-01-21
cjfield
s
*
delete Bi
o
::DB::Se
q
F
e
a
ture::Store::DBI::Pg pe
r
S
cott
.
.
.
commit
|
commitdiff
|
tree
2009-01-20
cjfi
e
lds
sync wi
t
h main trunk
commit
|
commitdiff
|
tree
2009-01-16
cjfields
In
c
.
R
C
versi
o
n
commit
|
commitdiff
|
tree
2009-01-16
c
j
fields
car
r
y over test fix
e
s
from trunk
commit
|
commitdiff
|
tree
2009-01-16
cjf
i
el
d
s
Carry over te
s
t change
f
rom main t
r
unk
commit
|
commitdiff
|
tree
2009-01-16
cjfields
Syn
c
with ma
i
n
t
runk
commit
|
commitdiff
|
tree
2009-01-13
c
j
f
ields
Sync
w
ith main trunk
commit
|
commitdiff
|
tree
2009-01-13
cjfields
Sync wit
h
main trunk
commit
|
commitdiff
|
tree
2009-01-06
cjfie
l
ds
Sync
w
ith trunk
.
This
will
appear in final re
l
e
ase
.
commit
|
commitdiff
|
tree
2009-01-06
cj
f
iel
d
s
R
e
solve conflict (c
a
n't directly m
e
rge
since trunk
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
cjf
i
e
l
ds
Sync t
h
at las
t
b
it with
t
runk
.
I'll h
a
ve to merge
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
cjfiel
d
s
Sync w
i
t
h trunk
commit
|
commitdiff
|
tree
2009-01-05
cjfields
B
u
mp RC to 2;
w
i
ll
tag, bag
,
and
ship
t
o
morrow after
.
.
.
commit
|
commitdiff
|
tree
2009-01-05
cjfiel
d
s
Sy
n
c with trunk
commit
|
commitdiff
|
tree
2009-01-04
cjf
i
elds
s
ync w
i
th t
r
unk
commit
|
commitdiff
|
tree
2009-01-02
cjfie
l
d
s
sync from
t
ru
n
k
commit
|
commitdiff
|
tree
2009-01-02
cjfields
s
y
nc
l
a
st co
m
mit
commit
|
commitdiff
|
tree
2009-01-02
cjfields
sync
w
i
t
h HEAD
commit
|
commitdiff
|
tree
2009-01-02
cjfiel
d
s
Re
m
ove t/Gr
a
phics
commit
|
commitdiff
|
tree
2009-01-02
cjfields
Remove Bio:
:
Graphics ex
a
mples and scripts
commit
|
commitdiff
|
tree
2008-12-26
cjfields
e
mpty
directory
commit
|
commitdiff
|
tree
2008-12-26
cjfields
Emp
t
y d
i
re
c
tory
commit
|
commitdiff
|
tree
2008-12-26
cjfield
s
emp
t
y d
i
rectory
commit
|
commitdiff
|
tree
2008-12-26
cjfields
sync
with
trunk
commit
|
commitdiff
|
tree
2008-12-24
cjfields
small clarifi
c
ation
commit
|
commitdiff
|
tree
2008-12-24
cjfi
e
lds
A
dd list of bugs slated for the 1
.
6
.
x serie
s
commit
|
commitdiff
|
tree
2008-12-24
cjfields
U
pdates for RC1
commit
|
commitdiff
|
tree
2008-12-24
cjfi
e
lds
remove Microarray dep
s
commit
|
commitdiff
|
tree
2008-12-24
cjfields
S
m
all fix
f
or
tests
JIC there is
a n
e
twork error
commit
|
commitdiff
|
tree
2008-12-24
cjfiel
d
s
Sync branch wit
h
trunk
commit
|
commitdiff
|
tree
2008-12-24
cjfields
R
emove
B
i
o::Microarray from bra
n
ch (still in developm
e
nt
.
.
.
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Remove
(merge did
n
't remove
t
his fo
r
s
o
me
reason
)
commit
|
commitdiff
|
tree
2008-12-24
cjfield
s
Remov
e
(merg
e
d
idn't r
e
mo
v
e t
h
is f
o
r
some reason)
commit
|
commitdiff
|
tree
2008-12-22
cj
f
ields
sync trunk with branch
commit
|
commitdiff
|
tree
2008-12-20
cjfiel
d
s
5
.
6
.
1
is min perl version re
q
uired for all
c
ore modules
n
ow
commit
|
commitdiff
|
tree
2008-12-19
cjfields
upda
t
e NAMES
commit
|
commitdiff
|
tree
2008-12-19
cjfield
s
small t
y
p
o
commit
|
commitdiff
|
tree
2008-12-18
c
j
f
i
e
lds
typo
commit
|
commitdiff
|
tree
2008-12-18
cj
f
iel
d
s
[b
u
g 2714]
commit
|
commitdiff
|
tree
2008-12-17
c
j
fi
e
lds
fi
x
test num
b
er
commit
|
commitdiff
|
tree
2008-12-17
cjfields
update Test
:
:Warn (fixe
s
Qual
.
t
test problems with
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfi
e
lds
missed
o
ne
commit
|
commitdiff
|
tree
2008-12-16
c
jfie
l
ds
EUtil
i
t
i
es r
e
mot
e
tes
t
s back online (simple te
s
ts
o
nly)
commit
|
commitdiff
|
tree
2008-12-16
cjfi
e
ld
s
EU
t
ili
t
ies
r
emote tests
b
a
ck online
(
simple tests o
n
ly)
commit
|
commitdiff
|
tree
2008-12-16
c
j
f
ields
You mu
s
t actually test da
t
a
if you want this module
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
c
j
fields
D
on't use prin
t
! Chan
g
ing to $se
l
f->debug or
c
o
m
menti
n
g out
commit
|
commitdiff
|
tree
2008-12-16
c
jf
i
e
lds
Bi
o
::Graph de
p
recated in 1
.
6
commit
|
commitdiff
|
tree
2008-12-16
cjfi
e
ld
s
sti
f
le warnin
g
s when passi
n
g strin
g
instead of intege
r
commit
|
commitdiff
|
tree
2008-12-16
c
jfields
hash ref, not array ref
commit
|
commitdiff
|
tree
2008-12-16
cjfie
l
ds
[
bug 2637
]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug
2
637]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-15
cj
f
iel
d
s
[b
u
g
2
6
3
7]
commit
|
commitdiff
|
tree
2008-12-15
cjfie
l
ds
[bug 2712]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
s
cores
commit
|
commitdiff
|
tree
2008-12-15
c
j
fields
remaining tests for Bio
:
:
T
ool::EUtilitie
s
commit
|
commitdiff
|
tree
2008-12-15
c
j
fields
more tes
t
data
commit
|
commitdiff
|
tree
2008-12-15
c
jfields
Up
d
ates:
commit
|
commitdiff
|
tree
2008-12-13
cjfie
l
ds
initia
l
batch of
EUtilPa
r
ame
t
ers
test
s
commit
|
commitdiff
|
tree
2008-12-13
cj
f
ields
einfo
tests
commit
|
commitdiff
|
tree
2008-12-12
cjfields
so
m
e
EU
t
iliti
e
s
t
ests (parsing from files)
commit
|
commitdiff
|
tree
2008-12-12
c
j
fi
e
lds
some tes
t
data for Bio:
:
Tools::EUtiliti
e
s
commit
|
commitdiff
|
tree
2008-12-12
cj
f
ields
u
p
d
ates to
EUtilities (gettin
g
ready for docs
,
te
s
ts
.
.
.
commit
|
commitdiff
|
tree
2008-12-12
cjfields
M
ove EUtilP
a
rameter
s
to T
o
ols
(
s
e
e
ms
m
ore
appr
o
p
r
iate)
commit
|
commitdiff
|
tree
2008-12-11
cjf
i
eld
s
fi
x
f
o
r bug when ge
t
ting cache
d
r
e
s
p
o
nse with filename
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfi
e
lds
small point
e
r to wiki
p
age (will update along with
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
c
jfields
small
updat
e
commit
|
commitdiff
|
tree
2008-12-11
cjfields
upda
t
es
commit
|
commitdiff
|
tree
2008-12-11
cjfields
ret
u
rn, not 're
t
urn undef'
commit
|
commitdiff
|
tree
2008-12-11
cjfields
return, not 'return unde
f
'
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[bug 2699]
commit
|
commitdiff
|
tree
2008-12-11
c
j
fields
[bug 2
6
9
9
]
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[bug 2
7
0
7]
commit
|
commitdiff
|
tree
2008-12-10
cjfiel
d
s
R
e
movin
g
from HEA
D
(deprecat
e
d for
1
.
6)
commit
|
commitdiff
|
tree
2008-12-10
cjfields
m
ini
pod fix
commit
|
commitdiff
|
tree
2008-12-10
cjfields
update deprecatio
n
l
i
st
commit
|
commitdiff
|
tree
2008-12-10
cjfields
rem
o
ve Bio::Graphics (separate pac
k
age
n
o
w)
commit
|
commitdiff
|
tree
2008-12-10
cjfields
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-10
cj
f
ields
Remove dependencies
f
or Bio::Graph
i
cs and deprecated
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfields
S
q
u
ash warning
commit
|
commitdiff
|
tree
2008-12-09
cjfields
d
iag()
only
on verbose
commit
|
commitdiff
|
tree
2008-12-09
cjfield
s
F
i
x
l
as
t
loop test
s
, m
o
ve so
m
e to can_ok
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Modify to test new
t
emp cla
s
ses a
n
d ensure that added
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfields
update Ma
u
ricio's email
commit
|
commitdiff
|
tree
2008-12-08
c
jfields
U
p
date Roy'
s
email
commit
|
commitdiff
|
tree
2008-12-08
c
jfie
l
ds
Roy's em
a
il (a
n
d bioperl
.
org n
o
t bioperl
.
edu)
commit
|
commitdiff
|
tree
2008-12-08
cjfie
l
ds
U
pda
t
e
d
emails
commit
|
commitdiff
|
tree
2008-12-07
cjfiel
d
s
[
b
ug
2699
]
commit
|
commitdiff
|
tree
2008-12-05
cjfields
Need to
r
etrieve the tree
f
or output
commit
|
commitdiff
|
tree
2008-12-05
cjfields
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-04
c
jfields
M
a
k
e Target a true DBLink
commit
|
commitdiff
|
tree
next