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use MovingLeastSquaresTransform2 in ElasticLayerAlignment
2009-09-11
Stephan S
a
alf
e
ld
D
ec
a
che processed
patches
after application
of th
e
C
T
.
commit
|
commitdiff
|
tree
2009-09-10
Ste
p
han Saalf
e
ld
Merge
b
ranch 'align' of ssh://repo
.
or
.
cz/srv/git/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
S
t
ephan Saalfeld
Added a
deform
option to the multi-layer-mosaic met
h
od
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan Saalfeld
Added a def
o
rm option to the mu
l
ti-laye
r
-
m
osaic metho
d
.
commit
|
commitdiff
|
tree
2009-09-10
S
t
ephan Saalfeld
A
dde
d
a convenience
method
t
o
e
x
p
ort
a flat
image for
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
S
t
ephan Saalfeld
Cos
m
e
t
ics (r
e
move
d
s
o
me non-required imports and empty
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan Saalfeld
A
a static m
e
thod to get
the bounding
b
ox o
f
a col
l
ection of
commit
|
commitdiff
|
tree
2009-09-02
Stephan
S
a
alfeld
* Fixed wron
g
bl
u
rrin
g
commit
|
commitdiff
|
tree
2009-09-01
Stephan Saalfel
d
ictScale was inverse---anyway---
t
here ar
e
r
ema
i
ni
n
g
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
Stephan
S
aalfeld
Pseudo-fix for locking issu
e
s
commit
|
commitdiff
|
tree
2009-09-01
Stephan Saalfeld
Crea
t
e
d
the following AR
G
B
composite modes for two
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
S
t
ephan Saalfeld
Remo
v
ed
the b
r
o
ken
A
ddRGBComposi
t
e an
d
add
e
d a func
t
iona
l
commit
|
commitdiff
|
tree
2009-08-31
Stephan S
a
alfeld
first attempt to create an a
d
ding CompositeContext
commit
|
commitdiff
|
tree
2009-08-31
S
tep
h
an Saalfeld
added tab for
stack z-disp
l
ayable
commit
|
commitdiff
|
tree
2009-08-31
Stephan
S
aalfel
d
Stack assures the correct smoothi
n
g for
t
he scale
i
n
troduced
.
.
.
commit
|
commitdiff
|
tree
2009-08-31
Stephan Saalfel
d
Aff
i
neTransformMo
d
e notifies
a
l
l
affe
c
t
e
d Disp
l
a
y
a
bles
.
.
.
commit
|
commitdiff
|
tree
2009-08-31
Stephan Saalfe
l
d
* Fixed bounding b
o
x es
t
i
m
ation
commit
|
commitdiff
|
tree
2009-08-30
S
t
ephan
S
aalfeld
*
r
e
m
oved non-required methods from patch
commit
|
commitdiff
|
tree
2009-08-30
Stepha
n
S
a
alfeld
consistently implemen
t
ed inverti
b
le coordinatetra
n
sform
s
.
.
.
commit
|
commitdiff
|
tree
2009-08-30
Ste
p
han Saalfeld
Added Inv
e
rti
b
l
eCoordinateTran
s
formList
commit
|
commitdiff
|
tree
2009-08-30
Stephan
S
a
alfeld
Inv
e
rtibleCoordinateTransform impleme
n
t
s Coor
d
inate
T
ransform
.
.
.
commit
|
commitdiff
|
tree
2009-08-30
Ste
p
h
a
n
S
aalfe
l
d
proper
t
ype CoordinateTransformList
.
c
l
one()
commit
|
commitdiff
|
tree
2009-08-06
Steph
a
n Saalf
e
ld
Fix Bug 71
commit
|
commitdiff
|
tree
2009-07-06
Stephan Saalfe
l
d
Merge branch 'master' of
s
sh://saa
l
feld@repo
.
o
r
.
cz
.
.
.
commit
|
commitdiff
|
tree
2009-07-06
Ste
p
han
S
aalf
e
ld
Merge branc
h
'master' into iter
a
ting-le
n
scor
r
ection
commit
|
commitdiff
|
tree
2009-07-06
Step
h
a
n
Saa
l
feld
Fixed the iteration in
l
ens-
c
orrection such t
h
at the
.
.
.
commit
|
commitdiff
|
tree
2009-07-06
Stephan Saalfeld
Implem
e
ted itera
t
ing len
s
-correction as
d
escrib
e
d i
n
.
.
.
commit
|
commitdiff
|
tree
2009-07-06
Steph
a
n Saalfeld
Tran
s
formM
e
shMapping sets In
t
erpolationMethod (t
r
acking
.
.
.
commit
|
commitdiff
|
tree
2009-06-29
S
t
ephan Sa
a
lfeld
Mer
g
e
branch 'paintables'
commit
|
commitdiff
|
tree
2009-06-29
Stephan Saalfeld
DistortionCorrection
T
ask finally does the all to a
l
l
commit
|
commitdiff
|
tree
2009-06-29
Stepha
n
Sa
a
lfe
l
d
A
b
stractAffin
e
Ti
l
e
2D ca
n
i
dentify t
h
e common Point
M
atch
e
s
.
.
.
commit
|
commitdiff
|
tree
2009-06-29
Stephan Saalfeld
F
i
xed transformmeshmapping
.
js
test to conform
w
ith
.
.
.
commit
|
commitdiff
|
tree
2009-06-26
Step
h
an
S
aalfeld
A no
t
so important improv
e
ment of how
p
oint correspondences
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
St
e
phan Saalfeld
F
i
xed acci
d
entia
l
ly i
n
v
erted
affine concatena
t
ion
.
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
Stephan
Saalfeld
Merge br
a
nch 'paintables
'
of
s
sh:/
/
s
a
alfeld@repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
Stephan Saal
f
eld
Apply in NonLinearT
r
ansformMo
d
e works
.
It was tested
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
St
e
phan Saal
f
eld
Fixed XML
parsi
n
g
of Co
o
rdinateTrans
f
ormLists
.
The
y
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
S
t
ephan
S
aalf
e
ld
Added Trak
E
M2 extension of AffineModel2D
commit
|
commitdiff
|
tree
2009-06-25
S
tephan Saalf
e
ld
Fi
x
ed
s
e
v
era
l
bugs in
and
e
xte
n
d
e
d
M
ovingLeastSquaresTransform:
commit
|
commitdiff
|
tree
2009-06-25
Stephan Saalfeld
P
a
tch
ca
l
culates
the
memory to
f
r
ee for
r
e
ndering a
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
Stephan
S
a
a
l
f
eld
Coordinate
T
r
a
nsfor
m
Lis
t
has
a
gen
e
r
i
c
p
arameter that
.
.
.
commit
|
commitdiff
|
tree
2009-06-22
Stephan Saalfeld
Merge branch '
p
aintables
'
of
s
sh://
s
aal
f
eld@repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2009-06-20
Stephan Saal
f
el
d
A
l
ign wil
l
not accept models
wi
t
h
less t
h
an 7 inli
e
rs
.
.
.
commit
|
commitdiff
|
tree
2009-06-19
Stephan Saal
f
e
ld
Align wi
l
l not
accept mod
e
ls with les
s
than 7 inlier
s
.
.
.
commit
|
commitdiff
|
tree
2009-06-19
Stephan
S
aalfeld
Workaroun
d
for a
bug which was p
r
ob
a
bly introduced
.
.
.
commit
|
commitdiff
|
tree
2009-06-17
S
teph
a
n
Sa
a
lfeld
Merge branch 'paintables' of ssh://
s
aal
f
eld@repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2009-06-17
Stepha
n
Saalfeld
Keep Points in world space
and corre
c
t
f
o
r
a
f
f
ine invarian
c
e
.
.
.
commit
|
commitdiff
|
tree
2009-06-16
Stephan
S
aalfeld
Ke
e
p Points in
w
o
rld spac
e
and
correct fo
r
af
f
ine
i
nvariance
.
.
.
commit
|
commitdiff
|
tree
2009-06-13
St
e
phan Saa
l
feld
A
dde
d
s
e
veral
TO
D
O
s
.
commit
|
commitdiff
|
tree
2009-06-12
Stephan Saalfeld
Merge
branch 'pa
i
nta
b
les' of ssh://saalfel
d
@repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2009-06-12
St
e
phan S
a
alfeld
N
o
nLinear
T
ransformMod
e
can apply, but st
i
ll it loo
k
s
.
.
.
commit
|
commitdiff
|
tree
2009-06-12
Ste
p
han Saal
f
eld
NonLinearTran
s
formMode i
n
prog
r
e
ss
.
Patches paint
.
.
.
commit
|
commitdiff
|
tree
2009-06-12
Step
h
an Saa
l
fe
l
d
Merge branch 'pai
n
t
ables' of ssh
:
//saalfeld@repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2009-06-12
S
t
ephan Saalfeld
Temp
o
rary
c
o
mmit
o
n NonLinear
T
ransformMode
.
.
.
more
.
.
.
commit
|
commitdiff
|
tree
2009-06-11
St
e
p
han Saalfeld
M
erge
b
ranch
'
paintables' of
ssh://
s
aalfeld@repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2009-06-11
Stephan S
a
al
f
el
d
Merge branch 'paintables' of ssh://
s
a
a
lfeld@re
p
o
.
or
.
.
.
commit
|
commitdiff
|
tree
2009-06-10
Stephan Saalfel
d
M
er
g
e branc
h
'
p
ai
n
ta
b
les' of
ssh://sa
a
lfe
l
d@repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2009-06-10
A
lb
e
rt Cardona
Making the Loader run all necessary
steps fo
r
setting
.
.
.
commit
|
commitdiff
|
tree
2009-06-08
Stephan Saalfeld
Fixed generics
.
commit
|
commitdiff
|
tree
2009-04-23
Stephan Saalfeld
M
e
rge branch '
m
aster'
of ssh://saalfe
l
d@
r
ep
o
.
or
.
cz
.
.
.
commit
|
commitdiff
|
tree
2009-04-23
Stephan Saalfeld
Re
m
oved
S
I
F
T_Te
s
t
.
java
commit
|
commitdiff
|
tree
2009-04-23
S
t
ephan Saalfeld
Add
e
d co
m
m
ent t
o
Tr
a
n
sform
M
e
s
h
Map
p
i
ng
commit
|
commitdiff
|
tree
2009-04-23
Stephan S
a
a
l
fel
d
A
d
ded
s
om
e
m
i
ssing f
i
nal
statements i
n
Transform
M
esh
commit
|
commitdiff
|
tree
2009-04-23
Stephan
S
a
a
l
f
eld
Use st
a
tic fields
f
or dialo
g
initialization in AlignTask
.
commit
|
commitdiff
|
tree
2009-04-06
St
e
ph
a
n Saalfeld
Fixed b
l
e
n
d
-alpha
.
commit
|
commitdiff
|
tree
2009-04-03
Stephan
Saa
l
feld
Put align
m
ulti-layer mos
a
i
c
in TrakEM2 shape and inserted
.
.
.
commit
|
commitdiff
|
tree
2009-04-03
Step
h
an Saal
f
eld
Ex
t
ended TransformMeshMapping to create inversely transforme
.
.
.
commit
|
commitdiff
|
tree
2009-04-02
Stephan
Saalfeld
Merge branch 'ic
t
'
o
f
s
s
h://saa
l
fel
d
@re
p
o
.
or
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2009-04-02
St
e
p
h
a
n Saalfeld
Multi-lay
e
r mosaicking
w
i
t
h
SIFT usin
g
the proper
new
.
.
.
commit
|
commitdiff
|
tree
2009-03-30
Stephan Saalfeld
Added
E
x
c
e
pti
o
n Ha
n
dling for the (not yet pushed) ch
a
nges in
commit
|
commitdiff
|
tree
2009-03-30
St
e
phan Saal
f
e
l
d
ARGB-images will be
l
oaded
a
s
ARGB_PRE which s
p
eeds
.
.
.
commit
|
commitdiff
|
tree
2009-03-05
Steph
a
n Saalfeld
Fixed the two-sided e
x
port of
s
erialized PointMatches
commit
|
commitdiff
|
tree
2009-03-05
Stephan Saalfel
d
Merge bran
c
h
'unuid-mipmaps' of ssh://
s
aalfeld@repo
.
.
.
commit
|
commitdiff
|
tree
2009-03-05
Step
h
a
n
Saalfeld
Added clon
e
() met
h
od
t
o
CoordinateTransform an
d
a
l
l
.
.
.
commit
|
commitdiff
|
tree
2009-03-05
S
t
e
p
han S
a
alfeld
Added b
u
g r
e
port to TODO
commit
|
commitdiff
|
tree
2009-02-24
St
e
phan S
a
a
lfeld
Re-added 5
1
e17a96c1cb33f2eee7da67743d25
5
22fff
2
32c
commit
|
commitdiff
|
tree
2009-02-23
Steph
a
n
S
a
alfe
l
d
Merge branch 'ict' of ssh://saal
f
eld@repo
.
or
.
c
z
/srv
.
.
.
commit
|
commitdiff
|
tree
2009-02-13
Stephan Saalf
e
ld
Me
r
ge bra
n
c
h
'ict
'
of ssh://saalfeld@repo
.
or
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2009-02-12
Stephan
S
aalfeld
M
erge bra
n
ch 'ict' of ssh://s
a
alfe
l
d@repo
.
o
r
.
cz/s
r
v
.
.
.
commit
|
commitdiff
|
tree
2009-02-12
St
e
phan
S
aalfeld
Merge br
a
nch 'ict' of
ssh
:
//s
a
alfe
l
d@repo
.
or
.
c
z/srv
.
.
.
commit
|
commitdiff
|
tree
2009-02-12
S
t
ep
h
a
n S
a
alfeld
Added method g
e
tCoordinateTransfor
m
Boundi
n
gBox to
Patch
commit
|
commitdiff
|
tree
2009-02-06
Step
h
an Sa
a
l
f
eld
Fixe
d
t
h
e
C
oordinateTrans
f
o
r
mLi
s
t XM
L
export
.
commit
|
commitdiff
|
tree
2009-02-06
Stepha
n
Saalfeld
Added t
h
e method
a
ppendCoor
d
i
n
ateTr
a
nsfo
r
m to Patch
.
.
.
commit
|
commitdiff
|
tree
2009-02-03
Steph
a
n Saa
l
f
eld
U
p
dated TOD
O
commit
|
commitdiff
|
tree
2009-02-03
S
tephan Saa
l
feld
C
omment ma
k
eu
p
commit
|
commitdiff
|
tree
2009-02-02
Stephan Saa
l
feld
Merge
b
ranch 'ict' int
o
ict2
commit
|
commitdiff
|
tree
2009-02-02
Stephan Saalfel
d
Made bo
o
lean
p
ara
m
eters stati
c
.
commit
|
commitdiff
|
tree
2009-02-02
Stephan S
a
al
f
eld
Added
ex
p
lan
a
ti
o
n of what the method doe
s
.
commit
|
commitdiff
|
tree
2009-02-02
Stephan Saa
l
fe
l
d
Added makeVirtualConnections method
for AbstractAff
i
neTi
l
e2D
.
commit
|
commitdiff
|
tree
2009-02-02
S
teph
a
n Saa
l
f
e
ld
Static
P
a
ram objects are public
.
commit
|
commitdiff
|
tree
2009-01-28
S
t
ephan S
a
a
l
fe
l
d
Replaced DBObjec
t
.
getId() in cache
-
file
n
ames by D
B
Object
.
.
.
commit
|
commitdiff
|
tree
2009-01-28
Stephan Saalfeld
Del
e
tes the affect
e
d cached
P
oi
n
tMatches on
mipm
a
p
.
.
.
commit
|
commitdiff
|
tree
2009-01-28
Stephan Saalfeld
Added String getUni
q
ueIdentifier() to DB
O
bject
.
T
h
e
.
.
.
commit
|
commitdiff
|
tree
2009-01-21
S
t
ephan
Saalfe
l
d
Merg
e
branch 'ic
t
' of ssh://s
a
alfeld@repo
.
or
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2009-01-21
Stephan Saa
l
feld
A
d
ded a TODO
commit
|
commitdiff
|
tree
2009-01-21
S
t
ephan Saal
f
e
ld
Align and AlignT
a
sk cache
extracted PointMatche
s
in
.
.
.
commit
|
commitdiff
|
tree
2009-01-17
Stephan S
a
alfe
l
d
Merge branch
'i
c
t' of ssh://saa
l
feld@
r
ep
o
.
o
r
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2009-01-17
Stephan
Saalfeld
Added checking for interruption in the mo
n
t
a
ge-method
.
commit
|
commitdiff
|
tree
2009-01-17
S
t
ephan Saalf
e
l
d
F
i
xed progress bar
display
commit
|
commitdiff
|
tree
2009-01-17
St
e
ph
a
n Saalfeld
L
i
near layer
alignm
e
nt
stops
loopin
g
on int
e
rruption
.
.
.
commit
|
commitdiff
|
tree
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