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use MovingLeastSquaresTransform2 in ElasticLayerAlignment
2009-09-11
Stephan S
a
alfeld
d
e
caching
was not
s
u
cce
s
sful---truing an
o
ther
o
n
e
.
.
.
commit
|
commitdiff
|
tree
2009-09-11
St
e
phan Saalfeld
D
eca
c
he p
r
oce
s
sed pat
c
hes after application of the CT
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan Saalfeld
Merge branch 'align'
of ssh://
r
epo
.
or
.
cz/srv/git/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
S
tephan Saal
f
eld
A
d
ded a def
o
rm option to the mu
l
t
i-layer-mosaic metho
d
.
commit
|
commitdiff
|
tree
2009-09-10
S
t
ep
h
an Saalf
e
ld
Adde
d
a defor
m
o
p
t
i
on
t
o
the multi-layer
-
mosaic method
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan S
a
alfeld
Added a co
n
venience me
t
hod to exp
o
rt a flat im
a
ge for
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
S
t
ephan Sa
a
lfeld
Co
s
meti
c
s (remo
v
ed some non-required imports and em
p
ty
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
S
t
ephan Saa
l
f
e
ld
A
a
s
tatic met
h
o
d to
get
the b
o
unding box of
a col
l
ecti
o
n
o
f
commit
|
commitdiff
|
tree
2009-09-02
Stepha
n
Sa
a
lfe
l
d
* Fixed
w
r
o
ng blurring
commit
|
commitdiff
|
tree
2009-09-01
Stephan Saalfeld
ictSca
l
e was i
n
v
e
r
se---anywa
y
---t
h
ere are remaining
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
Steph
a
n Saalf
e
l
d
Pseudo-fix
for locking issu
e
s
commit
|
commitdiff
|
tree
2009-09-01
Stephan Saa
l
feld
Created the f
o
l
lowing ARGB co
m
po
s
ite modes for two
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
Stephan Sa
a
lfeld
R
emov
e
d the b
r
oken AddRGBComposi
t
e a
n
d added
a
f
unctional
commit
|
commitdiff
|
tree
2009-08-31
Ste
p
han Saalfeld
first attempt to create
an adding
C
ompos
i
teCont
e
xt
commit
|
commitdiff
|
tree
2009-08-31
S
tephan Saalfeld
added tab for stack z-display
a
ble
commit
|
commitdiff
|
tree
2009-08-31
Stephan Sa
a
lfeld
Stack ass
u
res the correct smoothing for the s
c
ale in
t
roduced
.
.
.
commit
|
commitdiff
|
tree
2009-08-31
Ste
p
han Saalfeld
Af
f
i
n
e
T
r
ansfo
r
mMode notifies all aff
e
cted Displaya
b
les
.
.
.
commit
|
commitdiff
|
tree
2009-08-31
Stepha
n
Saalfeld
*
Fixe
d
bou
n
d
ing box es
t
im
a
tion
commit
|
commitdiff
|
tree
2009-08-30
Ste
p
han Saalfeld
* removed n
o
n-require
d
methods from patch
commit
|
commitdiff
|
tree
2009-08-30
Stephan
S
aalfeld
consistently implem
e
n
t
ed
invertible co
o
rd
i
na
t
etrans
f
orms
.
.
.
commit
|
commitdiff
|
tree
2009-08-30
Stephan Saalfeld
Added InvertibleCo
o
rdinateTrans
f
ormList
commit
|
commitdiff
|
tree
2009-08-30
Stephan Saal
f
eld
In
v
e
rtibleCoordinateT
r
ans
f
orm implements
C
oordinateTransf
o
rm
.
.
.
commit
|
commitdiff
|
tree
2009-08-30
Stephan Saalfe
l
d
proper type CoordinateTransfo
r
mL
i
st
.
c
lone()
commit
|
commitdiff
|
tree
2009-08-06
S
t
e
phan
S
aa
l
feld
Fix Bug 71
commit
|
commitdiff
|
tree
2009-07-06
Stephan
S
aalfeld
Merge br
a
nch
'master'
of ssh:/
/
saalfeld
@
r
e
po
.
or
.
c
z
.
.
.
commit
|
commitdiff
|
tree
2009-07-06
Stephan Saalfeld
M
e
rge
b
ranch '
m
aster' into iter
a
tin
g
-lenscor
r
ection
commit
|
commitdiff
|
tree
2009-07-06
Stephan Saalfeld
Fixed the it
e
r
ation in
l
ens-
c
orrection such tha
t
the
.
.
.
commit
|
commitdiff
|
tree
2009-07-06
S
t
e
p
han Saalfeld
Implemeted
i
terating
l
ens-correction
a
s described
i
n
.
.
.
commit
|
commitdiff
|
tree
2009-07-06
Stephan S
a
alfeld
TransformM
e
shM
a
pping se
t
s Inte
r
pola
t
ionMethod (tracking
.
.
.
commit
|
commitdiff
|
tree
2009-06-29
S
tep
h
an Saalfeld
Merge
branch 'paintables'
commit
|
commitdiff
|
tree
2009-06-29
Step
h
an Saalfeld
Di
s
tort
i
onC
o
rrectio
n
Tas
k
finally does the
a
l
l to all
commit
|
commitdiff
|
tree
2009-06-29
Stephan
Saalfeld
A
bstractAffineTile2D can identi
f
y the common Point
M
atches
.
.
.
commit
|
commitdiff
|
tree
2009-06-29
Ste
p
han Saalf
e
l
d
Fi
x
e
d transformmeshmapping
.
js test to conform with
.
.
.
commit
|
commitdiff
|
tree
2009-06-26
S
t
epha
n
Saal
f
eld
A not so important im
p
roveme
n
t
of how poi
n
t corresponden
c
es
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
St
e
phan Saalfe
l
d
Fixed accidentially in
v
erted
a
f
f
ine conca
t
enation
.
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
Stephan Saa
l
feld
Merge branch '
p
a
i
ntables' of ssh:
/
/saalfeld
@
r
e
po
.
or
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
Stephan S
a
alfeld
Ap
p
l
y in NonLinearT
r
a
nsform
M
ode works
.
It w
a
s tested
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
Stephan
S
aal
f
e
ld
Fixed XML pa
r
si
n
g of
C
oordinat
e
Tr
a
nsformLists
.
They
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
S
tephan
Saalfeld
A
d
ded Tr
a
kEM2 extension of AffineM
o
del2D
commit
|
commitdiff
|
tree
2009-06-25
S
t
eph
a
n Saalf
e
ld
Fixed several bugs
in and extended Movi
n
g
L
e
astSquaresTrans
f
orm:
commit
|
commitdiff
|
tree
2009-06-25
Stephan Saalfeld
Pat
c
h calculates the memory to free for rendering a
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
Stephan Saa
l
feld
C
o
ordina
t
eTransformList
h
as a
gen
e
ric parameter
t
h
at
.
.
.
commit
|
commitdiff
|
tree
2009-06-22
Steph
a
n
S
a
a
lfeld
Merge branc
h
'
p
aintables' of ssh://sa
a
lfeld@r
e
po
.
o
r
.
.
.
commit
|
commitdiff
|
tree
2009-06-20
Step
h
a
n
Saalfeld
Alig
n
will not
accept m
o
dels with le
s
s than 7 in
l
iers
.
.
.
commit
|
commitdiff
|
tree
2009-06-19
S
t
ephan Saalfe
l
d
Align
w
ill not acc
e
pt models with
less than 7
i
nliers
.
.
.
commit
|
commitdiff
|
tree
2009-06-19
Step
h
an
S
aa
l
feld
Workaround for a bug whic
h
was probab
l
y
i
n
t
roduc
e
d
.
.
.
commit
|
commitdiff
|
tree
2009-06-17
Stephan S
a
a
l
f
eld
Merg
e
branch 'paintables' of ssh:
/
/saalfeld@repo
.
o
r
.
.
.
commit
|
commitdiff
|
tree
2009-06-17
Stephan Saalfeld
Keep P
o
ints in w
o
rld space and corre
c
t
f
or af
f
ine
invari
a
nc
e
.
.
.
commit
|
commitdiff
|
tree
2009-06-16
Ste
p
han Saalf
e
ld
K
eep Points in
w
o
r
l
d space and c
o
rrect for a
f
fine invariance
.
.
.
commit
|
commitdiff
|
tree
2009-06-13
Stephan
S
a
alfeld
Added sever
a
l TO
D
Os
.
commit
|
commitdiff
|
tree
2009-06-12
S
t
epha
n
Saalfeld
Merge br
a
nc
h
'
pain
t
abl
e
s
'
of ssh://saalfeld@r
e
po
.
or
.
.
.
commit
|
commitdiff
|
tree
2009-06-12
Stepha
n
S
aalfeld
N
o
nLine
a
rTran
s
formMode can apply
,
bu
t
still it looks
.
.
.
commit
|
commitdiff
|
tree
2009-06-12
Stephan Saalfeld
N
o
nLinea
r
Transfor
m
Mode
i
n pr
o
gress
.
P
atches paint
.
.
.
commit
|
commitdiff
|
tree
2009-06-12
Stephan Saalfeld
Merge b
r
a
n
ch 'paintables'
o
f ssh://saalfeld@
r
epo
.
or
.
.
.
commit
|
commitdiff
|
tree
2009-06-12
Step
h
an S
a
alfeld
Tem
p
o
r
ary
commit o
n
NonLinearTransformMode
.
.
.
more
.
.
.
commit
|
commitdiff
|
tree
2009-06-11
Ste
p
han Saalfeld
Merge bran
c
h
'paintables' of ssh://s
a
alfeld@repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2009-06-11
S
tephan
S
aalfeld
Merge bran
c
h 'paintables' of
s
s
h://saa
l
feld@repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2009-06-10
Ste
p
han Saalfeld
Merge branch 'pain
t
ables' of
s
sh://saalfeld@repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2009-06-08
Stephan Saalfeld
Fixed generic
s
.
commit
|
commitdiff
|
tree
2009-04-23
Stephan Saalfeld
M
erge
branch 'm
a
ster' of s
s
h
:
/
/s
a
a
l
feld@repo
.
or
.
c
z
.
.
.
commit
|
commitdiff
|
tree
2009-04-23
St
e
phan Saalfeld
Re
m
oved
SIF
T
_
T
e
s
t
.
java
commit
|
commitdiff
|
tree
2009-04-23
Stepha
n
Saal
f
e
l
d
A
dded co
m
ment to TransformMeshMapp
i
ng
commit
|
commitdiff
|
tree
2009-04-23
Stephan Saalfeld
Added s
o
m
e
missi
n
g
f
inal s
t
atements
in
T
r
ansform
M
e
s
h
commit
|
commitdiff
|
tree
2009-04-23
Steph
a
n S
a
a
l
feld
Use st
a
tic fie
l
ds fo
r
dialo
g
i
n
i
tializati
o
n
in AlignTask
.
commit
|
commitdiff
|
tree
2009-04-06
Stephan Saalfeld
Fixed blend-alph
a
.
commit
|
commitdiff
|
tree
2009-04-03
S
t
ephan Saalfel
d
Put align multi-layer mosaic i
n
T
rakE
M
2 shape
a
nd inserted
.
.
.
commit
|
commitdiff
|
tree
2009-04-03
Stephan S
a
a
lfeld
Extended
T
rans
f
ormM
e
shMap
p
in
g
to c
r
eate inver
s
e
ly
transform
e
.
.
.
commit
|
commitdiff
|
tree
2009-04-02
Stephan Saalfeld
Merge branch 'ict' of ssh://saalfeld@repo
.
or
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2009-04-02
Stephan Saalfe
l
d
Multi
-
layer
mosai
c
king
wi
t
h
SIFT
u
s
i
ng the
p
roper new
.
.
.
commit
|
commitdiff
|
tree
2009-03-30
S
t
ephan
S
aalfel
d
A
dded E
x
ception Handli
n
g for t
h
e (not yet p
u
shed) changes in
commit
|
commitdiff
|
tree
2009-03-30
Stephan Saalfeld
ARGB-images will b
e
loade
d
as ARGB_PRE
which sp
e
eds
.
.
.
commit
|
commitdiff
|
tree
2009-03-05
Steph
a
n Saalf
e
ld
F
ixed the two-sided export of serialized PointMatches
commit
|
commitdiff
|
tree
2009-03-05
Stephan Saalfeld
Merg
e
branch 'unu
i
d-mip
m
aps' of ss
h
:
/
/saalf
e
ld@repo
.
.
.
commit
|
commitdiff
|
tree
2009-03-05
Ste
p
han Saalfeld
Add
e
d c
l
one
(
) method to
C
oordi
n
ateTr
a
nsform a
n
d
all
.
.
.
commit
|
commitdiff
|
tree
2009-03-05
Stephan
Saalfeld
A
d
ded bug
report to TODO
commit
|
commitdiff
|
tree
2009-02-24
St
e
phan Saalfeld
Re-
a
d
ded
5
1
e17a96c1cb33f2eee
7
da6
7
743
d
2
5522fff232c
commit
|
commitdiff
|
tree
2009-02-23
Stephan Saa
l
feld
Merge
b
r
anch 'ict' of
s
sh://
s
aa
l
feld@repo
.
or
.
cz/s
r
v
.
.
.
commit
|
commitdiff
|
tree
2009-02-13
Stephan
S
aalfeld
Merge branc
h
'i
c
t' of ssh:/
/
s
a
a
l
f
e
ld
@
repo
.
or
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2009-02-12
Stephan
S
aalfe
l
d
Merge branch 'ict' of ssh://sa
a
lfeld@r
e
po
.
or
.
cz/s
r
v
.
.
.
commit
|
commitdiff
|
tree
2009-02-12
Stephan Saal
f
eld
M
erge
b
ranch
'ict' o
f
ssh://saalfeld@repo
.
o
r
.
cz
/
srv
.
.
.
commit
|
commitdiff
|
tree
2009-02-12
Stephan
Saalfeld
Adde
d
method getCoordin
a
t
eT
r
a
n
sformBoundingBo
x
t
o
Patc
h
commit
|
commitdiff
|
tree
2009-02-06
Stephan Saalfeld
Fixed the CoordinateTra
n
sformList XML export
.
commit
|
commitdiff
|
tree
2009-02-06
Ste
p
han Saalfeld
Added t
h
e
method app
e
ndC
o
o
rdinate
T
r
a
nsfo
r
m to P
a
tch
.
.
.
commit
|
commitdiff
|
tree
2009-02-03
Stephan
S
aalfeld
U
p
dated TOD
O
commit
|
commitdiff
|
tree
2009-02-03
Stepha
n
Sa
a
l
feld
Comment makeup
commit
|
commitdiff
|
tree
2009-02-02
Stephan Saa
l
f
e
l
d
Mer
g
e branc
h
'i
c
t
'
i
n
to ict2
commit
|
commitdiff
|
tree
2009-02-02
Stephan Saalfeld
Made boo
l
ean para
m
eters
static
.
commit
|
commitdiff
|
tree
2009-02-02
Stephan Saal
f
eld
Added
explanatio
n
of what th
e
me
t
ho
d
does
.
commit
|
commitdiff
|
tree
2009-02-02
Stepha
n
Saalfeld
A
dded
m
a
k
eVirtualConnections method for
AbstractAffi
n
eTile2D
.
commit
|
commitdiff
|
tree
2009-02-02
Steph
a
n Saalfe
l
d
Static P
a
r
am obje
c
ts
a
re public
.
commit
|
commitdiff
|
tree
2009-01-28
S
t
ep
h
a
n Sa
a
lfeld
Replaced
D
BO
b
j
ect
.
get
I
d() i
n
cache-file names by
DBObject
.
.
.
commit
|
commitdiff
|
tree
2009-01-28
Stephan Sa
a
lfeld
D
eletes the affec
t
ed cached Point
M
atches on m
i
p
map
.
.
.
commit
|
commitdiff
|
tree
2009-01-28
S
teph
a
n Saalfeld
Added String getUn
i
queIdentifier() to DBO
b
ject
.
T
h
e
.
.
.
commit
|
commitdiff
|
tree
2009-01-21
Stephan
S
a
a
lfeld
Merge
b
r
anch
'ict' of ssh://saalfeld@repo
.
o
r
.
c
z/srv
.
.
.
commit
|
commitdiff
|
tree
2009-01-21
Stephan Saalfe
l
d
Ad
d
ed a TODO
commit
|
commitdiff
|
tree
2009-01-21
S
tephan Saalfeld
Align
and AlignTask cac
h
e extracted P
o
in
t
Matches in
.
.
.
commit
|
commitdiff
|
tree
2009-01-17
Stephan Saal
f
eld
Me
r
ge branch 'ict'
o
f
s
sh:/
/
s
aalfeld
@
repo
.
or
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2009-01-17
Stephan Saalf
e
ld
Ad
d
ed che
c
king
f
or interruptio
n
in th
e
montage-metho
d
.
commit
|
commitdiff
|
tree
2009-01-17
S
t
ephan Saa
l
feld
F
i
xed
p
rogress bar di
s
p
lay
commit
|
commitdiff
|
tree
2009-01-17
Ste
p
han Saalf
e
ld
Linear layer ali
g
n
ment s
t
o
ps
l
o
oping on interruption
.
.
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