Public Git Hosting - bioperl-live.git/tree

drwxr-xr-x		..
drwxr-xr-x	-	AlignIO	tree \| history
-rw-r--r--	4573	AlignStats.t	blob \| blame \| history \| raw
-rw-r--r--	1254	AlignUtil.t	blob \| blame \| history \| raw
-rw-r--r--	1981	Alphabet.t	blob \| blame \| history \| raw
-rw-r--r--	12786	Annotation.t	blob \| blame \| history \| raw
-rw-r--r--	2206	AnnotationAdaptor.t	blob \| blame \| history \| raw
-rw-r--r--	5956	Assembly.t	blob \| blame \| history \| raw
-rw-r--r--	3900	Biblio.t	blob \| blame \| history \| raw
-rw-r--r--	13540	BiblioReferences.t	blob \| blame \| history \| raw
-rw-r--r--	1514	Biblio_biofetch.t	blob \| blame \| history \| raw
-rw-r--r--	861	Biblio_eutils.t	blob \| blame \| history \| raw
-rw-r--r--	13529	BioDBGFF.t	blob \| blame \| history \| raw
-rw-r--r--	5873	BioDBSeqFeature.t	blob \| blame \| history \| raw
-rw-r--r--	2942	BioFetch_DB.t	blob \| blame \| history \| raw
-rw-r--r--	13557	BioGraphics.t	blob \| blame \| history \| raw
-rw-r--r--	1490	BlastIndex.t	blob \| blame \| history \| raw
-rw-r--r--	1309	ClusterIO.t	blob \| blame \| history \| raw
-rw-r--r--	5084	CodonTable.t	blob \| blame \| history \| raw
-rw-r--r--	6582	ContigSpectrum.t	blob \| blame \| history \| raw
drwxr-xr-x	-	Coordinate	tree \| history
-rw-r--r--	15412	DB.t	blob \| blame \| history \| raw
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-rw-r--r--	1665	EMBL_DB.t	blob \| blame \| history \| raw
-rw-r--r--	895	EMBOSS_Tools.t	blob \| blame \| history \| raw
-rw-r--r--	1387	ESEfinder.t	blob \| blame \| history \| raw
-rwxr-xr-x	35924	EUtilities.t	blob \| blame \| history \| raw
-rw-r--r--	1840	EncodedSeq.t	blob \| blame \| history \| raw
-rw-r--r--	6776	FeatureIO.t	blob \| blame \| history \| raw
-rw-r--r--	1127	FootPrinter.t	blob \| blame \| history \| raw
-rw-r--r--	1666	GDB.t	blob \| blame \| history \| raw
-rw-r--r--	3163	GFF.t	blob \| blame \| history \| raw
-rw-r--r--	1274	GOR4.t	blob \| blame \| history \| raw
-rw-r--r--	3915	GOterm.t	blob \| blame \| history \| raw
-rw-r--r--	579	GbrowseGFF.t	blob \| blame \| history \| raw
-rw-r--r--	810	Gel.t	blob \| blame \| history \| raw
-rw-r--r--	1803	Geneid.t	blob \| blame \| history \| raw
-rw-r--r--	2675	Genewise.t	blob \| blame \| history \| raw
-rw-r--r--	1313	Genomewise.t	blob \| blame \| history \| raw
-rw-r--r--	9767	Genpred.t	blob \| blame \| history \| raw
-rwxr-xr-x	2075	GraphAdaptor.t	blob \| blame \| history \| raw
-rw-r--r--	2772	GuessSeqFormat.t	blob \| blame \| history \| raw
-rw-r--r--	1302	HNN.t	blob \| blame \| history \| raw
-rw-r--r--	37109	Handler.t	blob \| blame \| history \| raw
-rw-r--r--	555	IUPAC.t	blob \| blame \| history \| raw
-rw-r--r--	5886	Index.t	blob \| blame \| history \| raw
-rw-r--r--	599	InstanceSite.t	blob \| blame \| history \| raw
-rw-r--r--	2250	InterProParser.t	blob \| blame \| history \| raw
-rw-r--r--	509	LargeLocatableSeq.t	blob \| blame \| history \| raw
drwxr-xr-x	-	LiveSeq	tree \| history
-rw-r--r--	7438	LocatableSeq.t	blob \| blame \| history \| raw
-rw-r--r--	7738	Location.t	blob \| blame \| history \| raw
-rw-r--r--	6464	LocationFactory.t	blob \| blame \| history \| raw
drwxr-xr-x	-	Map	tree \| history
-rw-r--r--	4422	Matrix.t	blob \| blame \| history \| raw
-rw-r--r--	7557	MetaSeq.t	blob \| blame \| history \| raw
-rw-r--r--	996	MitoProt.t	blob \| blame \| history \| raw
-rw-r--r--	1198	Molphy.t	blob \| blame \| history \| raw
-rw-r--r--	532	MultiFile.t	blob \| blame \| history \| raw
-rw-r--r--	1287	NetPhos.t	blob \| blame \| history \| raw
-rw-r--r--	984	OddCodes.t	blob \| blame \| history \| raw
-rw-r--r--	4695	Ontology.t	blob \| blame \| history \| raw
-rw-r--r--	3963	OntologyEngine.t	blob \| blame \| history \| raw
-rw-r--r--	769	OntologyStore.t	blob \| blame \| history \| raw
-rw-r--r--	12558	PAML.t	blob \| blame \| history \| raw
-rw-r--r--	2727	Perl.t	blob \| blame \| history \| raw
drwxr-xr-x	-	Phenotype	tree \| history
-rw-r--r--	1371	PhylipDist.t	blob \| blame \| history \| raw
-rw-r--r--	1665	Pictogram.t	blob \| blame \| history \| raw
-rw-r--r--	268	PodSyntax.t	blob \| blame \| history \| raw
drwxr-xr-x	-	PopGen	tree \| history
-rw-r--r--	5763	PrimarySeq.t	blob \| blame \| history \| raw
-rw-r--r--	741	Primer.t	blob \| blame \| history \| raw
-rw-r--r--	653	Promoterwise.t	blob \| blame \| history \| raw
-rw-r--r--	2377	ProtDist.t	blob \| blame \| history \| raw
-rw-r--r--	4373	ProtMatrix.t	blob \| blame \| history \| raw
-rw-r--r--	2430	ProtPsm.t	blob \| blame \| history \| raw
-rwxr-xr-x	1089	Pseudowise.t	blob \| blame \| history \| raw
-rw-r--r--	1837	QRNA.t	blob \| blame \| history \| raw
-rw-r--r--	434	RandDistFunctions.t	blob \| blame \| history \| raw
-rw-r--r--	3534	Range.t	blob \| blame \| history \| raw
-rw-r--r--	1880	RangeI.t	blob \| blame \| history \| raw
-rw-r--r--	1614	RefSeq.t	blob \| blame \| history \| raw
-rwxr-xr-x	2774	Registry.t	blob \| blame \| history \| raw
-rw-r--r--	1225	Relationship.t	blob \| blame \| history \| raw
-rw-r--r--	1868	RelationshipType.t	blob \| blame \| history \| raw
-rw-r--r--	4209	RemoteBlast.t	blob \| blame \| history \| raw
-rw-r--r--	951	RepeatMasker.t	blob \| blame \| history \| raw
-rw-r--r--	8627	RestrictionAnalysis.t	blob \| blame \| history \| raw
-rw-r--r--	1646	RestrictionIO.t	blob \| blame \| history \| raw
drwxr-xr-x	-	Root	tree \| history
-rwxr-xr-x	1185	Scansite.t	blob \| blame \| history \| raw
-rw-r--r--	655	SearchDist.t	blob \| blame \| history \| raw
drwxr-xr-x	-	SearchIO	tree \| history
-rw-r--r--	1149	Seg.t	blob \| blame \| history \| raw
-rw-r--r--	5820	Seq.t	blob \| blame \| history \| raw
-rw-r--r--	2055	SeqAnalysisParser.t	blob \| blame \| history \| raw
-rw-r--r--	3515	SeqBuilder.t	blob \| blame \| history \| raw
-rw-r--r--	6238	SeqEvolution.t	blob \| blame \| history \| raw
-rw-r--r--	2755	SeqFeatAnnotated.t	blob \| blame \| history \| raw
-rw-r--r--	4590	SeqFeatCollection.t	blob \| blame \| history \| raw
-rw-r--r--	11772	SeqFeature.t	blob \| blame \| history \| raw
-rw-r--r--	1746	SeqHound_DB.t	blob \| blame \| history \| raw
-rw-r--r--	3393	SeqIO.t	blob \| blame \| history \| raw
drwxr-xr-x	-	SeqIO	tree \| history
-rw-r--r--	1085	SeqPattern.t	blob \| blame \| history \| raw
-rw-r--r--	3456	SeqStats.t	blob \| blame \| history \| raw
-rw-r--r--	7553	SeqUtils.t	blob \| blame \| history \| raw
-rw-r--r--	949	SeqVersion.t	blob \| blame \| history \| raw
-rw-r--r--	1243	SeqWords.t	blob \| blame \| history \| raw
-rw-r--r--	1418	SequenceFamily.t	blob \| blame \| history \| raw
-rw-r--r--	1014	Sigcleave.t	blob \| blame \| history \| raw
-rw-r--r--	1120	Signalp.t	blob \| blame \| history \| raw
-rw-r--r--	13020	Signalp2.t	blob \| blame \| history \| raw
-rw-r--r--	738	SimilarityPair.t	blob \| blame \| history \| raw
-rw-r--r--	17322	SimpleAlign.t	blob \| blame \| history \| raw
-rw-r--r--	1238	SiteMatrix.t	blob \| blame \| history \| raw
-rw-r--r--	1433	Sopma.t	blob \| blame \| history \| raw
-rw-r--r--	1930	Species.t	blob \| blame \| history \| raw
-rw-r--r--	1482	Spidey.t	blob \| blame \| history \| raw
-rw-r--r--	6957	StandAloneBlast.t	blob \| blame \| history \| raw
-rw-r--r--	2157	StructIO.t	blob \| blame \| history \| raw
-rw-r--r--	3102	Structure.t	blob \| blame \| history \| raw
-rw-r--r--	733	Symbol.t	blob \| blame \| history \| raw
-rw-r--r--	9703	TandemRepeatsFinder.t	blob \| blame \| history \| raw
-rw-r--r--	4606	TaxonTree.t	blob \| blame \| history \| raw
-rw-r--r--	9671	Taxonomy.t	blob \| blame \| history \| raw
-rw-r--r--	3426	Term.t	blob \| blame \| history \| raw
-rw-r--r--	724	Tmhmm.t	blob \| blame \| history \| raw
-rw-r--r--	1040	Tools.t	blob \| blame \| history \| raw
-rw-r--r--	1880	Tools_genewise.t	blob \| blame \| history \| raw
-rw-r--r--	1367	Tools_genomewise.t	blob \| blame \| history \| raw
-rw-r--r--	2792	Tools_hmmer.t	blob \| blame \| history \| raw
-rw-r--r--	1614	Tools_sim4.t	blob \| blame \| history \| raw
drwxr-xr-x	-	Tree	tree \| history
-rw-r--r--	1648	TreeBuild.t	blob \| blame \| history \| raw
-rw-r--r--	4601	Unflattener.t	blob \| blame \| history \| raw
-rw-r--r--	4462	Unflattener2.t	blob \| blame \| history \| raw
-rw-r--r--	8046	UniGene.t	blob \| blame \| history \| raw
drwxr-xr-x	-	Variation	tree \| history
-rwxr-xr-x	3927	WrapperBase.t	blob \| blame \| history \| raw
-rw-r--r--	1635	alignUtilities.t	blob \| blame \| history \| raw
-rw-r--r--	824	cigarstring.t	blob \| blame \| history \| raw
-rwxr-xr-x	3008	consed.t	blob \| blame \| history \| raw
drwxr-xr-x	-	data	tree \| history
-rw-r--r--	1297	dblink.t	blob \| blame \| history \| raw
-rw-r--r--	875	ePCR.t	blob \| blame \| history \| raw
-rw-r--r--	2233	est2genome.t	blob \| blame \| history \| raw
-rw-r--r--	3124	flat.t	blob \| blame \| history \| raw
-rw-r--r--	1208	gerp.t	blob \| blame \| history \| raw
-rw-r--r--	2980	largepseq.t	blob \| blame \| history \| raw
drwxr-xr-x	-	lib	tree \| history
-rwxr-xr-x	1267	lucy.t	blob \| blame \| history \| raw
-rwxr-xr-x	1316	masta.t	blob \| blame \| history \| raw
-rw-r--r--	392	multiple_fasta.t	blob \| blame \| history \| raw
-rw-r--r--	7898	obo_parser.t	blob \| blame \| history \| raw
-rwxr-xr-x	1144	pICalculator.t	blob \| blame \| history \| raw
-rw-r--r--	4723	primaryqual.t	blob \| blame \| history \| raw
-rwxr-xr-x	1156	primedseq.t	blob \| blame \| history \| raw
-rwxr-xr-x	1273	primer3.t	blob \| blame \| history \| raw
-rw-r--r--	6813	protgraph.t	blob \| blame \| history \| raw
-rw-r--r--	5263	psm.t	blob \| blame \| history \| raw
-rw-r--r--	9681	rnamotif.t	blob \| blame \| history \| raw
-rw-r--r--	8067	seq_quality.t	blob \| blame \| history \| raw
-rwxr-xr-x	1929	seqfeaturePrimer.t	blob \| blame \| history \| raw
-rw-r--r--	1119	seqread_fail.t	blob \| blame \| history \| raw
-rwxr-xr-x	1412	sequencetrace.t	blob \| blame \| history \| raw
-rw-r--r--	6203	seqwithquality.t	blob \| blame \| history \| raw
-rwxr-xr-x	7960	simpleGOparser.t	blob \| blame \| history \| raw
-rw-r--r--	1309	sirna.t	blob \| blame \| history \| raw
-rw-r--r--	1725	splicedseq.t	blob \| blame \| history \| raw
-rw-r--r--	1020	tRNAscanSE.t	blob \| blame \| history \| raw
-rw-r--r--	4847	targetp.t	blob \| blame \| history \| raw
-rwxr-xr-x	1208	trim.t	blob \| blame \| history \| raw