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Add description of relocatable binaries
2015-06-09
Teemu Murtola
Add descripti
o
n of relocatabl
e
bin
a
ri
e
s
commit
|
commitdiff
|
tree
2015-06-04
Teemu
M
urtola
Refactor rst parsing for console output
commit
|
commitdiff
|
tree
2015-06-04
T
e
emu
M
urtola
R
epl
a
ce gromacs
.
7 ma
n
page with gmx
.
1
commit
|
commitdiff
|
tree
2015-06-04
Teemu Murtola
Document
c
u
r
re
n
t help f
o
rm
a
t
ting
commit
|
commitdiff
|
tree
2015-06-04
Teemu Murt
o
la
Basi
c
support f
o
r
t
itles
within tool hel
p
commit
|
commitdiff
|
tree
2015-05-27
M
ark A
b
raham
Fix
w
arnings
f
rom
G
C
C
5
commit
|
commitdiff
|
tree
2015-05-25
T
e
emu Murtola
Ov
e
rview docs fo
r
analysis
nb
s
ea
r
c
h
commit
|
commitdiff
|
tree
2015-05-22
Teemu M
u
r
t
o
la
Allow any order for sectio
n
s i
n
'gmx help -export'
commit
|
commitdiff
|
tree
2015-05-22
Teemu
Murtola
Merge
re
l
ease-5-0 i
n
to maste
r
commit
|
commitdiff
|
tree
2015-05-20
Teemu Murtola
Fix han
d
ling of real-valued
'
to
'
selection range
s
commit
|
commitdiff
|
tree
2015-05-11
T
e
e
m
u Murtola
U
s
e single vari
a
b
l
e for expected
D
oxygen vers
i
on
commit
|
commitdiff
|
tree
2015-05-10
Teem
u
Murt
o
la
Move som
e
test
u
t
i
ls and overview docs to dev g
u
ide
commit
|
commitdiff
|
tree
2015-04-24
Mark Abrah
a
m
Ad
d
devel
o
p
er d
o
cs
f
or new documentati
o
n
i
nfrastructure
commit
|
commitdiff
|
tree
2015-04-24
Teemu Murtola
Ad
d
s
e
c
tion on naming
c
onvent
i
ons
t
o
dev manual
commit
|
commitdiff
|
tree
2015-02-13
Teemu
M
u
r
t
o
la
Replace some [BR] in
h
e
l
p
text
s
w
ith rst li
t
erals
commit
|
commitdiff
|
tree
2015-01-24
T
e
emu Murtola
Remove
o
ld
s
election parser error handling
c
ode
commit
|
commitdiff
|
tree
2015-01-07
Teemu Murt
o
la
C
ustom progra
m
conte
x
t for
un
i
t t
e
s
ts
commit
|
commitdiff
|
tree
2015-01-06
Teemu Murtola
Use
xvgrclose() for f
i
l
es o
p
ened with xvgropen
(
)
commit
|
commitdiff
|
tree
2015-01-02
Teemu
M
urtola
Up
d
ate copy
r
i
ght year in copy
r
ite
.
cp
p
commit
|
commitdiff
|
tree
2014-12-28
Teemu Murtola
C
onvert gm
x
-insert-molecu
l
es into pro
p
er C++ module
commit
|
commitdiff
|
tree
2014-12-18
T
e
emu
M
urtola
Rewo
r
k gm
x
-solvate to use analysis nbsearch
commit
|
commitdiff
|
tree
2014-12-14
T
e
e
m
u M
u
r
tola
C++
interface
f
or surfa
c
e ar
e
a calcu
l
at
i
on
commit
|
commitdiff
|
tree
2014-11-27
Teemu Murtola
Clean
u
p
gmx s
o
lvate
commit
|
commitdiff
|
tree
2014-11-27
Teemu M
u
rtola
More control o
v
er fil
e
ba
c
kups
commit
|
commitdiff
|
tree
2014-11-26
T
e
emu Murtola
Con
v
ert s
u
rface a
r
ea cal
c
ulat
i
on t
o
C++
commit
|
commitdiff
|
tree
2014-11-21
Teemu Murtola
Descri
b
e doc-check in developer
m
a
n
u
al
commit
|
commitdiff
|
tree
2014-10-30
Teemu Murtola
Add
m
ore selection
u
nit tests
commit
|
commitdiff
|
tree
2014-10-30
Teemu Mur
t
ola
Fix
m
or
e
me
m
o
r
y leaks in def
a
ult gr
o
up creation
commit
|
commitdiff
|
tree
2014-10-29
Teemu Murt
o
la
Merge rele
a
se-5
-
0 in
t
o master
commit
|
commitdiff
|
tree
2014-10-28
Teemu Murtola
Avo
i
d common
.
h inclusion in CUDA
co
d
e
commit
|
commitdiff
|
tree
2014-10-23
Teemu Murtola
Move truncate(
)
wrapper
to futil
.
h
commit
|
commitdiff
|
tree
2014-10-23
T
eemu Mu
r
tola
Enca
p
sulate use of nice
(
)
commit
|
commitdiff
|
tree
2014-10-22
Teemu Murtol
a
Collect m
o
re platform-sp
e
c
i
fic code to
sy
s
info
.
h
commit
|
commitdiff
|
tree
2014-10-22
Te
e
mu Murtola
Rename common
.
h to classhelpers
.
h
commit
|
commitdiff
|
tree
2014-10-14
Teemu M
u
rtola
C
h
eck
c
o
nfig
.
h
u
sage
in doc-check
commit
|
commitdiff
|
tree
2014-09-21
T
e
e
m
u Murtola
I
n
t
rodu
c
e a v
a
riable to identify in-source build
commit
|
commitdiff
|
tree
2014-09-21
T
e
e
mu Murto
l
a
Ski
p
m
an/html/completi
o
n
g
eneration if not neede
d
commit
|
commitdiff
|
tree
2014-09-13
Teemu Murtola
Extend
support for float
/
double toler
a
nce
s
in testi
n
g
commit
|
commitdiff
|
tree
2014-09-12
Teemu Murto
l
a
Run inclu
d
e order chec
k
i
n
d
o
c
-check
commit
|
commitdiff
|
tree
2014-09-05
Teemu Murtola
Rem
o
ve
u
nnece
s
sary config
.
h
i
ncludes
commit
|
commitdiff
|
tree
2014-09-05
T
e
emu Murtola
M
o
ve
s
o
m
e def
i
nes to g
m
xpr
e
.
h for thread-M
P
I
commit
|
commitdiff
|
tree
2014-09-04
Teemu M
u
rtola
I
n
cl
u
de con
f
i
g
.
h directly if used
commit
|
commitdiff
|
tree
2014-08-23
Mark Abraham
Generalize markdown co
n
f
ig
u
ration mac
h
inery
commit
|
commitdiff
|
tree
2014-08-22
Teemu Murtola
M
ove
-
nice handling to C
o
mmandLineModuleManager
commit
|
commitdiff
|
tree
2014-08-20
Teemu Murtola
Misc
.
gmxpre
.
h-related c
h
anges
commit
|
commitdiff
|
tree
2014-08-20
Teem
u
Murto
l
a
Merge release-5-0
i
nto
m
aster
commit
|
commitdiff
|
tree
2014-08-20
T
e
e
mu
M
urtola
Remove unused config
.
h defin
e
s
commit
|
commitdiff
|
tree
2014-08-19
T
e
emu Mu
r
tola
Introduce
g
mxpr
e
.
h for truly
global d
e
fi
n
itions
commit
|
commitdiff
|
tree
2014-08-14
T
eemu Murtola
Fix CMa
k
e package
c
onfig after recent versi
o
n
changes
commit
|
commitdiff
|
tree
2014-08-10
Teemu Murtola
Improve
i
nitAfterFirstF
r
ame() usability
commit
|
commitdiff
|
tree
2014-08-10
Teemu Murtola
Make ve
c
.
h co
n
s
t-corr
e
ct with both C and C++
commit
|
commitdiff
|
tree
2014-08-10
Te
e
mu
Murt
o
la
B
a
s
i
c
exclusion
s
upport
for
a
nalysis nbs
e
a
r
ch
commit
|
commitdiff
|
tree
2014-08-10
Rolan
d
S
c
hulz
M
erge release-4-6 into release-
5
-0
commit
|
commitdiff
|
tree
2014-08-09
Teemu Mu
r
tola
A
dd S
e
lection::hasOnlyAtom
s
()
commit
|
commitdiff
|
tree
2014-08-07
T
e
emu Murtola
Basic support for 2D
n
eigh
b
orhood
s
earch
for analysi
s
commit
|
commitdiff
|
tree
2014-08-04
Teemu Murtola
Verify MD5 sum for
F
F
TW dow
n
load
commit
|
commitdiff
|
tree
2014-08-03
Teemu Mur
t
ola
Ch
e
ck fram
e
a
t
o
m
count befor
e
evaluating selections
commit
|
commitdiff
|
tree
2014-07-24
Teemu Mur
t
ola
Do
n
ot a
c
t
ual
l
y i
n
s
tall uniqueptr
.
h
commit
|
commitdiff
|
tree
2014-07-10
Teemu
M
urtola
Bump
S
OVER
S
ION
commit
|
commitdiff
|
tree
2014-07-09
Teemu
Murtola
Clean up gmx_h
e
ader_config
commit
|
commitdiff
|
tree
2014-07-09
Teemu Murtola
Merge release-5-0 into mas
t
er
commit
|
commitdiff
|
tree
2014-07-09
Teemu M
u
rtola
Imp
r
ove modul
e
de
p
e
n
dency graph layout
commit
|
commitdiff
|
tree
2014-07-08
Teemu
M
u
rtola
Move GMX
_
C
XX
1
1
t
o
config
.
h
commit
|
commitdiff
|
tree
2014-07-08
Tee
m
u M
u
rtola
R
e
m
ove gmx_u
n
ique_p
t
r from
o
p
tions publi
c
hea
d
ers
commit
|
commitdiff
|
tree
2014-07-08
T
eemu Mur
t
ola
Remove selection help fr
o
m SelectionCol
l
e
ction
commit
|
commitdiff
|
tree
2014-07-08
Teemu Murtola
M
ak
e
doc-chec
k
pass
again without warnings
commit
|
commitdiff
|
tree
2014-07-05
T
e
e
m
u Murtola
Merge relea
s
e-5-0 into
m
aster
commit
|
commitdiff
|
tree
2014-06-30
Teemu Murtola
Merge rel
e
ase-5-0 into maste
r
commit
|
commitdiff
|
tree
2014-06-28
Tee
m
u
M
urtola
R
emove overeag
e
r selection i
n
dex
group check
commit
|
commitdiff
|
tree
2014-06-21
Teemu Murto
l
a
Co
n
vert che
c
k
point
.
c t
o
C
++ co
m
pilation
commit
|
commitdiff
|
tree
2014-06-07
T
e
e
m
u Murtola
Clean
up FileNameOptionStorage
i
mplement
a
t
ion
commit
|
commitdiff
|
tree
2014-06-07
Teemu Murtola
Move index
.
* to topo
l
ogy/
commit
|
commitdiff
|
tree
2014-06-03
Mark Abrah
a
m
Convert rep
l
_e
x
.
c to C++
commit
|
commitdiff
|
tree
2014-06-02
Teemu Murtola
Move ato
m
pro
p
.
*
to topolog
y
/
commit
|
commitdiff
|
tree
2014-05-31
Teemu Murtola
Mov
e
mt
o
p_ut
i
l
.
* a
n
d topsort
.
*
to topo
l
o
g
y/
commit
|
commitdiff
|
tree
2014-05-29
Teemu Mur
t
ola
Remove m
o
re
u
s
es of typ
e
d
efs
.
h
commit
|
commitdiff
|
tree
2014-05-25
Teemu Mu
r
tola
Move gen
e
r
al functions
o
ut of typedefs
.
h
commit
|
commitdiff
|
tree
2014-05-25
Te
e
m
u M
u
rt
o
la
Remove s
o
me
typede
f
s
.
h d
e
pendenci
e
s
commit
|
commitdiff
|
tree
2014-05-25
Te
e
mu Mur
t
ola
Move types/t
o
pol
o
gy
.
h to topol
o
gy/
commit
|
commitdiff
|
tree
2014-05-24
Teemu Mu
r
tola
Move typ
e
s/id
e
f
.
h to
t
opology/
commit
|
commitdiff
|
tree
2014-05-21
Tee
m
u M
u
r
tola
Move mshift
.
* t
o
pbc
u
t
il/
commit
|
commitdiff
|
tree
2014-05-21
Teemu Murtola
Merge t_graph definition into mshift
.
h
commit
|
commitdiff
|
tree
2014-05-18
T
e
emu Murtola
Clean
u
p matio
.
*
commit
|
commitdiff
|
tree
2014-05-17
Te
e
mu Murtola
More
el
a
borate default handlin
g
f
o
r Fil
e
NameO
p
tion
commit
|
commitdiff
|
tree
2014-05-01
Teem
u
M
u
r
tol
a
Fix incorrect
l
im
i
t
s
in
F
loatOptio
n
S
t
orag
e
commit
|
commitdiff
|
tree
2014-04-27
Teemu Murtola
Move
'
real' definition to utility/rea
l
.
h
commit
|
commitdiff
|
tree
2014-04-16
Teemu M
u
rtola
Rem
o
ve unused minver
t
.
h
commit
|
commitdiff
|
tree
2014-04-13
T
eemu Murtola
Remove
u
n
used s
h
ift
.
h
commit
|
commitdiff
|
tree
2014-04-08
Teemu M
u
rtola
Version bump for pos
t
-5
.
0 de
v
el
o
p
m
ent
commit
|
commitdiff
|
tree
2014-04-04
Teemu
Murtol
a
Remove ancient SGI-specific code
commit
|
commitdiff
|
tree
2014-04-04
T
e
e
mu Murtola
Clean up g
m
x_fatal
.
*
commit
|
commitdiff
|
tree
2014-03-30
T
eemu Mur
t
ola
Clean up string2
.
h-re
l
ated includes
commit
|
commitdiff
|
tree
2014-03-27
Teemu
Mur
t
ola
M
o
ve include d
e
pendency checks to doc
-
chec
k
commit
|
commitdiff
|
tree
2014-03-27
Teemu Murtola
Bet
t
er automa
t
e
d
D
ox
y
gen docu
m
entation checker
commit
|
commitdiff
|
tree
2014-03-27
Tee
m
u
Murtola
Misc
.
Doxygen fixes
commit
|
commitdiff
|
tree
2014-03-27
Teemu Mu
r
tola
Move thr
e
ad_mpi
t
o src/external/
commit
|
commitdiff
|
tree
2014-03-24
Tee
m
u Murto
l
a
Remove
g
mxpre
p
roce
s
s from in
c
lude path
commit
|
commitdiff
|
tree
2014-03-08
Teemu Murtola
Remo
v
e
some un
n
eces
s
ary decl
a
rations
commit
|
commitdiff
|
tree
2014-02-28
T
eemu Mur
t
ol
a
Residu
a
l SIMD Doxygen i
m
prov
e
ment
s
commit
|
commitdiff
|
tree
2014-02-28
Teem
u
Murtol
a
M
i
sc
.
D
o
x
ygen co
n
figuratio
n
changes
commit
|
commitdiff
|
tree
next