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2015-12-15	Teemu Murtola	Move some mdrun code out of gmxlib/	commit \| commitdiff \| tree
2015-12-15	Teemu Murtola	Move gpu_utils etc. out of gmxlib	commit \| commitdiff \| tree
2015-12-14	Teemu Murtola	Install baseversion.h	commit \| commitdiff \| tree
2015-12-12	Teemu Murtola	Create separate module for trajectory data	commit \| commitdiff \| tree
2015-12-12	Teemu Murtola	Move disre.* and orires.* to listed-forces/	commit \| commitdiff \| tree
2015-12-12	Teemu Murtola	Move ifunc.* to topology/	commit \| commitdiff \| tree
2015-12-12	Teemu Murtola	Move put_atoms_in_box_omp() to sim_util.*	commit \| commitdiff \| tree
2015-12-12	Teemu Murtola	Remove topology -> fileio dependency	commit \| commitdiff \| tree
2015-12-11	Teemu Murtola	Merge "Merge branch 'origin/release-5-1'"	commit \| commitdiff \| tree
2015-12-09	Teemu Murtola	Split txtdump.*, part 2	commit \| commitdiff \| tree
2015-12-09	Teemu Murtola	Split txtdump.*, part 1	commit \| commitdiff \| tree
2015-12-03	Teemu Murtola	Move strdb.* to utility/	commit \| commitdiff \| tree
2015-12-03	Teemu Murtola	Move filenm.* to commandline	commit \| commitdiff \| tree
2015-12-02	Teemu Murtola	Split filenm.*	commit \| commitdiff \| tree
2015-11-30	Teemu Murtola	Remove topology -> mdtypes dependency	commit \| commitdiff \| tree
2015-11-30	Teemu Murtola	Remove obsolete references to legacyheaders/	commit \| commitdiff \| tree
2015-11-30	Teemu Murtola	Merge remaining legacyheaders/types/ to mdtypes/	commit \| commitdiff \| tree
2015-11-30	Teemu Murtola	Move ifunc.h to gmxlib	commit \| commitdiff \| tree
2015-11-30	Teemu Murtola	Move force_flags.h to mdlib/	commit \| commitdiff \| tree
2015-11-30	Teemu Murtola	libgromacs CMake source file management cleanup	commit \| commitdiff \| tree
2015-11-30	Teemu Murtola	Move hardware info structs to hardware/	commit \| commitdiff \| tree
2015-11-30	Teemu Murtola	Clean up some selection code	commit \| commitdiff \| tree
2015-11-23	Teemu Murtola	Move precision detection symbols to baseversion.*	commit \| commitdiff \| tree
2015-11-22	Teemu Murtola	Remove correlationfunctions -> mdtypes dependency	commit \| commitdiff \| tree
2015-11-21	Teemu Murtola	Use v.data() instead of &v[0] for C interop	commit \| commitdiff \| tree
2015-11-15	Teemu Murtola	Add EnumOption with support for proper enum types	commit \| commitdiff \| tree
2015-11-15	Teemu Murtola	Fix reporting of unused cycle suppressions	commit \| commitdiff \| tree
2015-11-14	Teemu Murtola	Move network.h to gmxlib/	commit \| commitdiff \| tree
2015-11-14	Teemu Murtola	Move gmx_ga2la.h to domdec/	commit \| commitdiff \| tree
2015-11-13	Teemu Murtola	Remove t_commrec dependency from cmdlineinit.cpp	commit \| commitdiff \| tree
2015-11-13	Teemu Murtola	Move gmx_detect_hardware.h to gmxlib/	commit \| commitdiff \| tree
2015-11-13	Teemu Murtola	Move nonbonded.h to gmxlib/nonbonded/	commit \| commitdiff \| tree
2015-11-13	Teemu Murtola	Let users build without compiler warnings	commit \| commitdiff \| tree
2015-11-13	Teemu Murtola	Merge types/nsgrid.h into nsgrid.h	commit \| commitdiff \| tree
2015-11-13	Teemu Murtola	Report unused cycle suppressions	commit \| commitdiff \| tree
2015-11-11	Teemu Murtola	Support inspecting expected error messages in tests	commit \| commitdiff \| tree
2015-11-11	Teemu Murtola	Remove build system for boost	commit \| commitdiff \| tree
2015-11-10	Teemu Murtola	Remove remaining boost dependencies	commit \| commitdiff \| tree
2015-11-07	Teemu Murtola	Remove misc. copyrite.h functions	commit \| commitdiff \| tree
2015-11-07	Teemu Murtola	Move gmx_omp_nthreads.h and gmx_thread_affinity.h to...	commit \| commitdiff \| tree
2015-11-06	Teemu Murtola	Move PBC enums to pbc.*	commit \| commitdiff \| tree
2015-11-06	Teemu Murtola	Move ns.h and nsgrid.h to mdlib/	commit \| commitdiff \| tree
2015-11-06	Teemu Murtola	Move force.h and vsite.h into mdlib/	commit \| commitdiff \| tree
2015-11-05	Teemu Murtola	Move types/rgb.h to fileio/	commit \| commitdiff \| tree
2015-11-04	Teemu Murtola	Merge "Merge branch release-5-1"	commit \| commitdiff \| tree
2015-11-03	Teemu Murtola	Update build scripts to match releng refactoring	commit \| commitdiff \| tree
2015-11-02	Teemu Murtola	Replace boost::exception_ptr with std::exception_ptr	commit \| commitdiff \| tree
2015-11-01	Teemu Murtola	Remove remaining scoped_ptrs	commit \| commitdiff \| tree
2015-11-01	Teemu Murtola	Remove more scoped_ptr uses	commit \| commitdiff \| tree
2015-10-28	Teemu Murtola	Remove unused TrajectoryAnalysisModule code	commit \| commitdiff \| tree
2015-10-27	Teemu Murtola	Additional checks for selection input	commit \| commitdiff \| tree
2015-10-26	Teemu Murtola	Remove some boost::scoped_ptr uses	commit \| commitdiff \| tree
2015-10-25	Teemu Murtola	Fix missing help text for trajectory analysis tools	commit \| commitdiff \| tree
2015-10-24	Teemu Murtola	Change some shared_ptrs back to unique_ptr	commit \| commitdiff \| tree
2015-10-22	Teemu Murtola	Additional normalization options for gmx rdf	commit \| commitdiff \| tree
2015-10-22	Teemu Murtola	Use include_directories(SYSTEM ...) consistently	commit \| commitdiff \| tree
2015-10-22	Teemu Murtola	Clean up and improve fatal error handling	commit \| commitdiff \| tree
2015-10-19	Teemu Murtola	Split EnumIntOption from StringOption	commit \| commitdiff \| tree
2015-10-14	Teemu Murtola	Make bash completions work with bash --posix	commit \| commitdiff \| tree
2015-10-13	Teemu Murtola	Improve documentation and tests for refdata	commit \| commitdiff \| tree
2015-10-12	Teemu Murtola	Hide implementation details from cmdlinerunner.h	commit \| commitdiff \| tree
2015-10-12	Teemu Murtola	Improve gmx sasa tests and clean up -or handling	commit \| commitdiff \| tree
2015-10-11	Teemu Murtola	Remove obsolete build scripts	commit \| commitdiff \| tree
2015-10-08	Teemu Murtola	Remove unused error handling code	commit \| commitdiff \| tree
2015-10-05	Teemu Murtola	Make using C++ type with snew() a compiler error	commit \| commitdiff \| tree
2015-10-05	Teemu Murtola	More detailed error message for missing files	commit \| commitdiff \| tree
2015-10-03	Teemu Murtola	Silence Python detection on CMake rerun	commit \| commitdiff \| tree
2015-10-03	Teemu Murtola	Merge branch release-5-1 into master	commit \| commitdiff \| tree
2015-10-03	Teemu Murtola	Minor cleanup in gmx insert-molecules	commit \| commitdiff \| tree
2015-10-03	Teemu Murtola	Use AtomsBuilder in gmx insert-molecules	commit \| commitdiff \| tree
2015-10-03	Teemu Murtola	Use more std::vector for solvate/insert-molecules	commit \| commitdiff \| tree
2015-10-03	Teemu Murtola	Use std::vector for makeExclusionDistances()	commit \| commitdiff \| tree
2015-10-03	Teemu Murtola	Remove SelectionOptionBehavior::useDefaultGroups	commit \| commitdiff \| tree
2015-10-03	Teemu Murtola	Move reusable code into SelectionOptionBehavior	commit \| commitdiff \| tree
2015-10-03	Teemu Murtola	Add --ref-data update-changed	commit \| commitdiff \| tree
2015-10-03	Teemu Murtola	Make cmdlinerunner.cpp use ICommandLineOptionsModule	commit \| commitdiff \| tree
2015-10-02	Teemu Murtola	Fix -seltype option for C++ tools	commit \| commitdiff \| tree
2015-10-02	Teemu Murtola	More flexible API for xvg testing	commit \| commitdiff \| tree
2015-10-02	Teemu Murtola	More headers out of legacyheaders	commit \| commitdiff \| tree
2015-10-01	Teemu Murtola	Enable time unit and selections in ICommandLineOptionsModule	commit \| commitdiff \| tree
2015-10-01	Teemu Murtola	Convert nb_free_energy.c to C++	commit \| commitdiff \| tree
2015-10-01	Teemu Murtola	Move mdoutf and trajectory_writing to mdlib	commit \| commitdiff \| tree
2015-09-27	Teemu Murtola	Remove unnecessary includes from legacyheaders/	commit \| commitdiff \| tree
2015-09-27	Teemu Murtola	Move viewit.* to commandline/	commit \| commitdiff \| tree
2015-09-27	Teemu Murtola	More headers out of legacyheaders	commit \| commitdiff \| tree
2015-09-26	Teemu Murtola	Remove types/membedt.h	commit \| commitdiff \| tree
2015-09-25	Teemu Murtola	More legacyheaders to gmxlib/mdlib	commit \| commitdiff \| tree
2015-09-25	Teemu Murtola	Move some headers from legacyheaders to mdlib/gmxlib	commit \| commitdiff \| tree
2015-09-25	Teemu Murtola	Remove types/shellfc.h	commit \| commitdiff \| tree
2015-09-25	Teemu Murtola	Remove some extern "C" declarations	commit \| commitdiff \| tree
2015-09-22	Teemu Murtola	Move oenv.* to fileio/	commit \| commitdiff \| tree
2015-09-22	Teemu Murtola	Reduce use of output_env_t from types/oenv.h	commit \| commitdiff \| tree
2015-09-19	Teemu Murtola	Convert calc_verletbuf.c to C++	commit \| commitdiff \| tree
2015-09-18	Teemu Murtola	Remove unused macros.h includes (fix build)	commit \| commitdiff \| tree
2015-09-18	Teemu Murtola	Move asize() from macros.h and reduce use of macros.h	commit \| commitdiff \| tree
2015-09-18	Teemu Murtola	Create topology/atom_id.h	commit \| commitdiff \| tree
2015-09-11	Teemu Murtola	Build script for coverage	commit \| commitdiff \| tree
2015-09-10	Teemu Murtola	Run clang analysis for test code	commit \| commitdiff \| tree
2015-09-08	Teemu Murtola	Improve gmx sasa error message	commit \| commitdiff \| tree
2015-09-08	Teemu Murtola	Refactor reference data checking	commit \| commitdiff \| tree
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