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commit	18962e228db3257a0ea4531b27b5313cf69d47c0
author	Teemu Murtola <teemu.murtola@gmail.com>
	Fri, 6 Nov 2015 11:09:33 +0000 (6 13:09 +0200)
committer	Teemu Murtola <teemu.murtola@gmail.com>
	Sat, 7 Nov 2015 04:25:27 +0000 (7 06:25 +0200)
tree	a25c2395531190c979b8fffd9a52b86aa56279eb	tree \| snapshot (tar.gz zip)
parent	99a6cacb31fa538b9b8e14a49f4d525191742d80	commit \| diff

Move gmx_omp_nthreads.h and gmx_thread_affinity.h to gmxlib

One cyclic dependency found, but suppressed for now.

Some cleanup, and remove the gmx_ prefix from thread_affinity.*.

Change-Id: I31a4e1216b90a70a42e5fd375c84623d08b56ddd

33 files changed:

docs/doxygen/cycle-suppressions.txt		diff \| blob \| blame \| history
src/gromacs/domdec/domdec.cpp		diff \| blob \| blame \| history
src/gromacs/domdec/domdec_constraints.cpp		diff \| blob \| blame \| history
src/gromacs/domdec/domdec_specatomcomm.cpp		diff \| blob \| blame \| history
src/gromacs/domdec/domdec_topology.cpp		diff \| blob \| blame \| history
src/gromacs/domdec/domdec_vsite.cpp		diff \| blob \| blame \| history
src/gromacs/gmxlib/gmx_omp_nthreads.cpp		diff \| blob \| blame \| history
src/gromacs/gmxlib/gmx_omp_nthreads.h	[moved from src/gromacs/legacyheaders/gmx_omp_nthreads.h with 93% similarity]	diff \| blob \| blame \| history
src/gromacs/gmxlib/thread_affinity.cpp	[moved from src/gromacs/gmxlib/gmx_thread_affinity.cpp with 99% similarity]	diff \| blob \| blame \| history
src/gromacs/gmxlib/thread_affinity.h	[moved from src/gromacs/legacyheaders/gmx_thread_affinity.h with 83% similarity]	diff \| blob \| blame \| history
src/gromacs/listed-forces/manage-threading.cpp		diff \| blob \| blame \| history
src/gromacs/mdlib/calcmu.cpp		diff \| blob \| blame \| history
src/gromacs/mdlib/clincs.cpp		diff \| blob \| blame \| history
src/gromacs/mdlib/constr.cpp		diff \| blob \| blame \| history
src/gromacs/mdlib/coupling.cpp		diff \| blob \| blame \| history
src/gromacs/mdlib/force.cpp		diff \| blob \| blame \| history
src/gromacs/mdlib/forcerec.cpp		diff \| blob \| blame \| history
src/gromacs/mdlib/mdatoms.cpp		diff \| blob \| blame \| history
src/gromacs/mdlib/minimize.cpp		diff \| blob \| blame \| history
src/gromacs/mdlib/nbnxn_atomdata.cpp		diff \| blob \| blame \| history
src/gromacs/mdlib/nbnxn_grid.cpp		diff \| blob \| blame \| history
src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_file_generator/nbnxn_kernel_simd_template.cpp.pre		diff \| blob \| blame \| history
src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp		diff \| blob \| blame \| history
src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn.cpp		diff \| blob \| blame \| history
src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn.cpp		diff \| blob \| blame \| history
src/gromacs/mdlib/nbnxn_search.cpp		diff \| blob \| blame \| history
src/gromacs/mdlib/sim_util.cpp		diff \| blob \| blame \| history
src/gromacs/mdlib/tgroup.cpp		diff \| blob \| blame \| history
src/gromacs/mdlib/update.cpp		diff \| blob \| blame \| history
src/gromacs/mdlib/vsite.cpp		diff \| blob \| blame \| history
src/gromacs/pbcutil/pbc.cpp		diff \| blob \| blame \| history
src/programs/mdrun/resource-division.cpp		diff \| blob \| blame \| history
src/programs/mdrun/runner.cpp		diff \| blob \| blame \| history

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