repo.or.cz
/
bioperl-run.git
/
tree
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
history
|
HEAD
|
snapshot (
tar.gz
zip
)
speelink fixes, patch courtesy Charles Plessy, fixes #3256
[bioperl-run.git]
/
lib
/
Bio
/
Tools
/
Run
/
tree
d44271e9877f233b2714cc122372601f7e8ab57f
drwxr-xr-x
..
drwxr-xr-x
-
Alignment
tree
|
history
-rw-r--r--
24268
Analysis.pm
blob
|
blame
|
history
|
raw
drwxr-xr-x
-
Analysis
tree
|
history
-rw-r--r--
10843
AnalysisFactory.pm
blob
|
blame
|
history
|
raw
drwxr-xr-x
-
AnalysisFactory
tree
|
history
-rw-r--r--
28150
AssemblerBase.pm
blob
|
blame
|
history
|
raw
-rw-r--r--
26043
BEDTools.pm
blob
|
blame
|
history
|
raw
drwxr-xr-x
-
BEDTools
tree
|
history
-rwxr-xr-x
17850
BWA.pm
blob
|
blame
|
history
|
raw
drwxr-xr-x
-
BWA
tree
|
history
-rwxr-xr-x
3940
BlastPlus.pm
blob
|
blame
|
history
|
raw
drwxr-xr-x
-
BlastPlus
tree
|
history
-rw-r--r--
26615
Bowtie.pm
blob
|
blame
|
history
|
raw
drwxr-xr-x
-
Bowtie
tree
|
history
-rw-r--r--
8918
Cap3.pm
blob
|
blame
|
history
|
raw
-rwxr-xr-x
7801
Coil.pm
blob
|
blame
|
history
|
raw
-rw-r--r--
9603
EMBOSSApplication.pm
blob
|
blame
|
history
|
raw
-rw-r--r--
10336
EMBOSSacd.pm
blob
|
blame
|
history
|
raw
-rw-r--r--
10889
ERPIN.pm
blob
|
blame
|
history
|
raw
-rw-r--r--
14309
Ensembl.pm
blob
|
blame
|
history
|
raw
-rw-r--r--
10119
Eponine.pm
blob
|
blame
|
history
|
raw
-rw-r--r--
16168
FootPrinter.pm
blob
|
blame
|
history
|
raw
-rw-r--r--
8709
Genemark.pm
blob
|
blame
|
history
|
raw
-rw-r--r--
12676
Genewise.pm
blob
|
blame
|
history
|
raw
-rw-r--r--
6022
Genscan.pm
blob
|
blame
|
history
|
raw
-rw-r--r--
11707
Glimmer.pm
blob
|
blame
|
history
|
raw
-rwxr-xr-x
17426
Hmmer.pm
blob
|
blame
|
history
|
raw
-rw-r--r--
40915
Infernal.pm
blob
|
blame
|
history
|
raw
-rwxr-xr-x
9775
MCS.pm
blob
|
blame
|
history
|
raw
-rwxr-xr-x
19281
Maq.pm
blob
|
blame
|
history
|
raw
drwxr-xr-x
-
Maq
tree
|
history
-rw-r--r--
7806
Match.pm
blob
|
blame
|
history
|
raw
-rw-r--r--
10434
Mdust.pm
blob
|
blame
|
history
|
raw
-rw-r--r--
12043
Meme.pm
blob
|
blame
|
history
|
raw
-rw-r--r--
8915
Minimo.pm
blob
|
blame
|
history
|
raw
-rw-r--r--
13906
Newbler.pm
blob
|
blame
|
history
|
raw
-rwxr-xr-x
13388
Phrap.pm
blob
|
blame
|
history
|
raw
drwxr-xr-x
-
Phylo
tree
|
history
-rw-r--r--
11880
Primate.pm
blob
|
blame
|
history
|
raw
-rw-r--r--
28757
Primer3.pm
blob
|
blame
|
history
|
raw
-rwxr-xr-x
6786
Prints.pm
blob
|
blame
|
history
|
raw
-rwxr-xr-x
6927
Profile.pm
blob
|
blame
|
history
|
raw
-rw-r--r--
10666
Promoterwise.pm
blob
|
blame
|
history
|
raw
-rw-r--r--
11384
Pseudowise.pm
blob
|
blame
|
history
|
raw
-rw-r--r--
14171
RNAMotif.pm
blob
|
blame
|
history
|
raw
-rw-r--r--
11682
RepeatMasker.pm
blob
|
blame
|
history
|
raw
-rwxr-xr-x
5353
Samtools.pm
blob
|
blame
|
history
|
raw
drwxr-xr-x
-
Samtools
tree
|
history
-rwxr-xr-x
6504
Seg.pm
blob
|
blame
|
history
|
raw
-rwxr-xr-x
7190
Signalp.pm
blob
|
blame
|
history
|
raw
-rw-r--r--
14972
Simprot.pm
blob
|
blame
|
history
|
raw
-rwxr-xr-x
38732
StandAloneBlastPlus.pm
blob
|
blame
|
history
|
raw
drwxr-xr-x
-
StandAloneBlastPlus
tree
|
history
-rw-r--r--
12313
TigrAssembler.pm
blob
|
blame
|
history
|
raw
-rwxr-xr-x
7921
Tmhmm.pm
blob
|
blame
|
history
|
raw
-rw-r--r--
28658
TribeMCL.pm
blob
|
blame
|
history
|
raw
-rw-r--r--
21491
Vista.pm
blob
|
blame
|
history
|
raw
-rw-r--r--
7122
tRNAscanSE.pm
blob
|
blame
|
history
|
raw