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(parent: 20d2c48) | patch

commit	42649c5308b51c1b87d442ac35e82b8ccfa6545d
author	Chris Fields <cjfields@bioperl.org>
	Wed, 6 Jul 2011 02:33:21 +0000 (5 21:33 -0500)
committer	Chris Fields <cjfields@bioperl.org>
	Wed, 6 Jul 2011 02:33:21 +0000 (5 21:33 -0500)
tree	2f06e1fc864e3fe24e6efaddb7d231a1f76a14df	tree \| snapshot (tar.gz zip)
parent	20d2c4886f28eeb41465b780b875e6370e3c33ee	commit \| diff

speelink fixes, patch courtesy Charles Plessy, fixes #3256

19 files changed:

lib/Bio/Tools/Run/Alignment/Clustalw.pm		diff \| blob \| blame \| history
lib/Bio/Tools/Run/Alignment/Pal2Nal.pm		diff \| blob \| blame \| history
lib/Bio/Tools/Run/Alignment/StandAloneFasta.pm		diff \| blob \| blame \| history
lib/Bio/Tools/Run/AssemblerBase.pm		diff \| blob \| blame \| history
lib/Bio/Tools/Run/FootPrinter.pm		diff \| blob \| blame \| history
lib/Bio/Tools/Run/Hmmer.pm		diff \| blob \| blame \| history
lib/Bio/Tools/Run/MCS.pm		diff \| blob \| blame \| history
lib/Bio/Tools/Run/Phylo/Gerp.pm		diff \| blob \| blame \| history
lib/Bio/Tools/Run/Phylo/Gumby.pm		diff \| blob \| blame \| history
lib/Bio/Tools/Run/Phylo/PAML/Baseml.pm		diff \| blob \| blame \| history
lib/Bio/Tools/Run/Phylo/Phast/PhastCons.pm		diff \| blob \| blame \| history
lib/Bio/Tools/Run/Phylo/Phast/PhyloFit.pm		diff \| blob \| blame \| history
lib/Bio/Tools/Run/Phylo/Phylip/Consense.pm		diff \| blob \| blame \| history
lib/Bio/Tools/Run/Phylo/Phyml.pm		diff \| blob \| blame \| history
lib/Bio/Tools/Run/Phylo/QuickTree.pm		diff \| blob \| blame \| history
lib/Bio/Tools/Run/Phylo/Semphy.pm		diff \| blob \| blame \| history
lib/Bio/Tools/Run/StandAloneBlastPlus.pm		diff \| blob \| blame \| history
lib/Bio/Tools/Run/TigrAssembler.pm		diff \| blob \| blame \| history
t/lib/Test/Builder/Tester.pm		diff \| blob \| blame \| history

BioPerl wrappers