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descriptionBioPerl wrappers
homepage URLhttp://bioperl.org
repository URLhttps://github.com/bioperl/bioperl-run.git
ownercjfields@bioperl.org
last changeWed, 16 Sep 2020 04:27:13 +0000 (15 21:27 -0700)
last refreshTue, 16 Apr 2024 13:45:05 +0000 (16 15:45 +0200)
mirror URLgit://repo.or.cz/bioperl-run.git
https://repo.or.cz/bioperl-run.git
ssh://git@repo.or.cz/bioperl-run.git
bundle infobioperl-run.git downloadable bundles
content tags
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README.md

Description

This is the home for bioperl-run, which contain modules that provides a Perl interface to various bioinformatics applications. This allows various applications to be used with common BioPerl objects.

See the Changes file for more information about what is contained in here.

Installation

See the accompanying INSTALL file for details on installing bioperl-run.

Feedback

Write down any problems or praise and send them to bioperl-l@bioperl.org.

Bugs

Bug reports can be made using the GitHub Issues tracker for this distribution.

shortlog
2020-09-16 Mauricio Herrera... Updating Mauricio's emailmaster61/head commit | commitdiff | tree | snapshot (tar.gz zip)
2019-02-08 Chris FieldsMerge pull request #54 from dmr3/masterrelease-1-7-3 commit | commitdiff | tree | snapshot (tar.gz zip)
2019-02-08 Chris FieldsBio::Cluster is a dependency commit | commitdiff | tree | snapshot (tar.gz zip)
2019-02-08 Chris Fieldsno dist.ini yet commit | commitdiff | tree | snapshot (tar.gz zip)
2019-02-08 Carnë DraugBio::Installer: remove all this modules and related... commit | commitdiff | tree | snapshot (tar.gz zip)
2019-02-08 Carnë Draugt/data: remove unused sample_dataset_1.* data files commit | commitdiff | tree | snapshot (tar.gz zip)
2019-02-08 Carnë DraugBio/Tools/Run/Bowtie.pm: move to its own distribution commit | commitdiff | tree | snapshot (tar.gz zip)
2019-02-08 Carnë DraugBio/Tools/Run/Maq.pm: move to its own distribution commit | commitdiff | tree | snapshot (tar.gz zip)
2019-02-08 Carnë DraugBio/Tools/Run/TigrAssembler.pm: move to its own distrib... commit | commitdiff | tree | snapshot (tar.gz zip)
2019-02-08 Carnë DraugBio/Tools/Run/Newbler.pm: move to its own distribution commit | commitdiff | tree | snapshot (tar.gz zip)
2019-02-08 Carnë DraugBio/Tools/Run/Minimo.pm: move to its own distribution commit | commitdiff | tree | snapshot (tar.gz zip)
2019-02-08 Carnë DraugBio/Tools/Run/Phrap.pm: move to its own distribution commit | commitdiff | tree | snapshot (tar.gz zip)
2019-02-08 Carnë DraugBio/Tools/Run/Cap3.pm: move to its own distribution commit | commitdiff | tree | snapshot (tar.gz zip)
2019-02-08 Carnë DraugBio/Tools/Run/BWA.pm: move to its own distribution commit | commitdiff | tree | snapshot (tar.gz zip)
2019-02-08 Carnë DraugBio/Tools/Run/Meme.pm: move to its own distribution commit | commitdiff | tree | snapshot (tar.gz zip)
2019-02-05 Carnë Draugmaint: make Changes for last release easier to parse commit | commitdiff | tree | snapshot (tar.gz zip)
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5 years ago release-1-7-3    | commit | log
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7 years ago release-1-7-1    | commit | log
7 years ago release-1-7-0    | commit | log
12 years ago release-1-6-9 BioPerl-Run release 1.6.900 tag  | commit | log
14 years ago run-1-6-1_001    | commit | log
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15 years ago bioperl-1-6-RC2    | commit | log
15 years ago bioperl-1-6-RC1    | commit | log
15 years ago bioperl-1-6-RC1_15468    | commit | log
17 years ago bioperl-run-release-1-5-2    | commit | log
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19 years ago bioperl-run-release-1-5-0-rc1    | commit | log
20 years ago bioperl-run-release-1-4-0    | commit | log
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3 years ago master log | tree
9 years ago topic/issue11 log | tree
14 years ago branch-1-6 log | tree
18 years ago bioperl-run-branch-1-5-1 log | tree
21 years ago branch-1-0-0 log | tree
22 years ago branch-07-ensembl-120 log | tree
22 years ago branch-07 log | tree
BioPerl wrappers