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Bump version to 1.6 for final release.
2009-01-24
cjf
i
e
l
ds
B
u
mp ver
s
i
on
to 1
.
6
fo
r
final
r
e
l
ease
.
commit
|
commitdiff
|
tree
2009-01-21
cjfields
sy
n
c last commit
commit
|
commitdiff
|
tree
2009-01-21
cjfiel
d
s
* sync with tr
u
nk
commit
|
commitdiff
|
tree
2009-01-21
cjfields
* sy
n
c wit
h
trunk
commit
|
commitdiff
|
tree
2009-01-21
c
jfields
* delete Bio::DB::SeqFe
a
ture::Store::DBI:
:
Pg
per
Scott
.
.
.
commit
|
commitdiff
|
tree
2009-01-20
cjfields
sync with mai
n
t
r
unk
commit
|
commitdiff
|
tree
2009-01-16
cjfields
I
n
c
.
RC version
commit
|
commitdiff
|
tree
2009-01-16
cjfields
carr
y
over test f
i
x
es from
t
runk
commit
|
commitdiff
|
tree
2009-01-16
cjfi
e
lds
C
a
r
ry over t
e
s
t
change from main
tru
n
k
commit
|
commitdiff
|
tree
2009-01-16
cjf
i
e
l
ds
Sync w
i
th main t
r
unk
commit
|
commitdiff
|
tree
2009-01-13
cjfields
Sy
n
c with main tru
n
k
commit
|
commitdiff
|
tree
2009-01-13
cjfie
l
ds
Sync w
i
th main
tr
u
nk
commit
|
commitdiff
|
tree
2009-01-06
cjfie
l
ds
S
ync with trunk
.
This wil
l
appear in fina
l
release
.
commit
|
commitdiff
|
tree
2009-01-06
cjfields
Resolve conflict (c
a
n
't dire
c
tly merge
s
ince
t
runk
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
c
j
fields
S
ync that
l
ast bit
w
i
th trunk
.
I'll have to merg
e
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
cjfields
Sy
n
c with tr
u
nk
commit
|
commitdiff
|
tree
2009-01-05
c
j
fields
Bump RC
t
o 2; will tag, ba
g
, and ship tom
o
rrow after
.
.
.
commit
|
commitdiff
|
tree
2009-01-05
cjfields
Sy
n
c
with trunk
commit
|
commitdiff
|
tree
2009-01-04
c
j
fields
sync
with trunk
commit
|
commitdiff
|
tree
2009-01-02
cjfie
l
ds
sy
n
c from trunk
commit
|
commitdiff
|
tree
2009-01-02
cjfields
sync la
s
t
c
ommit
commit
|
commitdiff
|
tree
2009-01-02
c
j
f
ie
l
ds
s
y
n
c with HEAD
commit
|
commitdiff
|
tree
2009-01-02
cjfields
Remo
v
e t/G
r
aphics
commit
|
commitdiff
|
tree
2009-01-02
cjfields
Remove
B
io::Graphics
examples and scripts
commit
|
commitdiff
|
tree
2008-12-26
c
jfields
empty
dir
e
c
tory
commit
|
commitdiff
|
tree
2008-12-26
c
j
fiel
d
s
E
m
pty directory
commit
|
commitdiff
|
tree
2008-12-26
c
jfie
l
ds
empty director
y
commit
|
commitdiff
|
tree
2008-12-26
cjf
i
elds
sync with trunk
commit
|
commitdiff
|
tree
2008-12-24
cjfields
small clari
f
icat
i
on
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Add list of bu
g
s s
l
at
e
d
for the 1
.
6
.
x serie
s
commit
|
commitdiff
|
tree
2008-12-24
cjfields
U
p
dates for
R
C1
commit
|
commitdiff
|
tree
2008-12-24
cjfields
remove Microarr
a
y
d
e
p
s
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Small fix for tests JIC
the
r
e is a network error
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Sync branch wit
h
t
r
unk
commit
|
commitdiff
|
tree
2008-12-24
cjfi
e
lds
Remove Bio::Microarray from b
r
a
nch (st
i
ll
i
n development
.
.
.
commit
|
commitdiff
|
tree
2008-12-24
cjfields
R
emove (merge didn't remove this for some reason)
commit
|
commitdiff
|
tree
2008-12-24
cjfields
R
e
move (mer
g
e
didn't remove
t
hi
s
for some reason)
commit
|
commitdiff
|
tree
2008-12-22
cjfields
sync trunk with
b
r
anch
commit
|
commitdiff
|
tree
2008-12-20
cjfields
5
.
6
.
1
i
s min perl version
req
u
ired for all core modules now
commit
|
commitdiff
|
tree
2008-12-19
cjfie
l
ds
update NAMES
commit
|
commitdiff
|
tree
2008-12-19
cjfield
s
sm
a
l
l
t
ypo
commit
|
commitdiff
|
tree
2008-12-18
cjf
i
el
d
s
typo
commit
|
commitdiff
|
tree
2008-12-18
cjfields
[bug 2714]
commit
|
commitdiff
|
tree
2008-12-17
cjfields
fix t
e
st number
commit
|
commitdiff
|
tree
2008-12-17
cjfields
upd
a
te T
e
s
t::W
a
r
n
(fixes
Qual
.
t
t
e
st problems with
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjf
i
el
d
s
missed
o
ne
commit
|
commitdiff
|
tree
2008-12-16
c
jfie
l
ds
EUti
l
ities remote tests back onl
i
ne (si
m
ple t
e
sts only)
commit
|
commitdiff
|
tree
2008-12-16
cjfiel
d
s
EUtilities
remote tests back
online
(
simp
l
e
t
ests only)
commit
|
commitdiff
|
tree
2008-12-16
c
j
fi
e
lds
You must actually test data if
y
ou want t
h
is module
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
c
jf
i
elds
Don't use prin
t
! Changing to $self->
d
ebug or commenting out
commit
|
commitdiff
|
tree
2008-12-16
cj
f
ields
B
i
o
::
G
raph depr
e
cated in
1
.
6
commit
|
commitdiff
|
tree
2008-12-16
c
jfi
e
l
ds
st
i
fle w
a
rnings when
p
assing st
r
i
ng ins
t
ead of integer
commit
|
commitdiff
|
tree
2008-12-16
cjfields
h
a
sh re
f
, not array
r
ef
commit
|
commitdiff
|
tree
2008-12-16
c
j
fi
e
lds
[
b
u
g 26
3
7]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[
bug 263
7
]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-15
cjf
i
elds
[b
u
g
2
637]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
[bug 2712]
commit
|
commitdiff
|
tree
2008-12-15
cjfie
l
d
s
scores
commit
|
commitdiff
|
tree
2008-12-15
cj
f
ields
remainin
g
te
s
ts for Bio:
:
To
o
l::EUtilities
commit
|
commitdiff
|
tree
2008-12-15
cjfields
mor
e
t
e
st data
commit
|
commitdiff
|
tree
2008-12-15
c
j
fiel
d
s
Updates:
commit
|
commitdiff
|
tree
2008-12-13
cjfields
i
nit
i
a
l
batch o
f
EUtilParameter
s
tests
commit
|
commitdiff
|
tree
2008-12-13
cjfields
e
info test
s
commit
|
commitdiff
|
tree
2008-12-12
cjfields
some
E
Utili
t
ies tests
(
par
s
i
n
g
from f
i
l
e
s)
commit
|
commitdiff
|
tree
2008-12-12
cjfield
s
some test
d
a
ta for
Bio::Tools::EUtilities
commit
|
commitdiff
|
tree
2008-12-12
cjfields
updates to EUtili
t
ies (g
e
tt
i
ng ready for do
c
s, test
s
.
.
.
commit
|
commitdiff
|
tree
2008-12-12
cjfields
Mov
e
EUtil
P
arame
t
ers
t
o
T
oo
l
s (seems more appropriate)
commit
|
commitdiff
|
tree
2008-12-11
cjfi
e
l
d
s
fix f
o
r
b
ug
w
hen getting cached r
e
sponse with fi
l
en
a
me
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfields
small
pointer to wiki
pa
g
e (w
i
l
l update along with
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfields
small updat
e
commit
|
commitdiff
|
tree
2008-12-11
cjfields
updates
commit
|
commitdiff
|
tree
2008-12-11
c
j
fields
retu
r
n, not 'return un
d
ef'
commit
|
commitdiff
|
tree
2008-12-11
cjfields
retur
n
, not 'return undef'
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[bug
2
6
99]
commit
|
commitdiff
|
tree
2008-12-11
c
jf
i
elds
[bug 2699]
commit
|
commitdiff
|
tree
2008-12-11
cjfie
l
ds
[bug 27
0
7]
commit
|
commitdiff
|
tree
2008-12-10
c
j
fi
e
lds
Remov
i
ng
f
rom HEA
D
(dep
r
ecated for
1
.
6)
commit
|
commitdiff
|
tree
2008-12-10
c
jfields
mini pod
fix
commit
|
commitdiff
|
tree
2008-12-10
c
j
fields
up
d
ate dep
r
e
c
a
t
ion l
i
st
commit
|
commitdiff
|
tree
2008-12-10
cjfields
remove
B
io::Grap
h
ics (sepa
r
ate package now)
commit
|
commitdiff
|
tree
2008-12-10
cjfields
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-10
cjf
i
elds
R
e
mo
v
e dependenc
i
e
s
for B
i
o
:
:Graphics an
d
deprecated
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfie
l
ds
Squash
warning
commit
|
commitdiff
|
tree
2008-12-09
cjf
i
elds
diag() only o
n
verbose
commit
|
commitdiff
|
tree
2008-12-09
cjf
i
e
lds
Fix las
t
loop
t
e
sts, mo
v
e s
o
me to
can
_
ok
commit
|
commitdiff
|
tree
2008-12-09
cj
f
i
e
lds
Modify to t
e
s
t new temp clas
s
es and ensure that added
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfields
updat
e
M
a
u
r
icio's email
commit
|
commitdiff
|
tree
2008-12-08
cjfields
Update Roy's
e
mail
commit
|
commitdiff
|
tree
2008-12-08
cjfields
Roy
'
s em
a
il
(
and bi
o
perl
.
o
rg not b
i
operl
.
edu)
commit
|
commitdiff
|
tree
2008-12-08
cjfie
l
ds
U
pd
a
t
ed e
m
ails
commit
|
commitdiff
|
tree
2008-12-07
c
j
fie
l
d
s
[bug 2
6
9
9]
commit
|
commitdiff
|
tree
2008-12-05
cjfields
N
eed to retrieve the tree for output
commit
|
commitdiff
|
tree
2008-12-05
cj
f
ields
[bug
2450]
commit
|
commitdiff
|
tree
2008-12-04
cjfields
Make Targ
e
t a t
r
ue DB
L
ink
commit
|
commitdiff
|
tree
2008-12-04
cjfiel
d
s
D
irectory is no long
e
r needed
(Heikki split this
u
p
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cjfields
add force_nse
tests
commit
|
commitdiff
|
tree
2008-12-03
c
j
f
i
elds
leave I
D
undefi
n
ed if it isn't
p
r
e
sent, but all
o
w t
h
e
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Remove files ac
c
idently
a
dded fr
o
m
l
ast commit
commit
|
commitdiff
|
tree
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