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* sync with trunk
2009-01-21
cjfields
* sy
n
c wi
t
h tr
u
nk
commit
|
commitdiff
|
tree
2009-01-21
cjfields
*
delete Bio::DB::SeqF
e
atu
r
e::St
o
r
e
::DBI:
:
Pg per Scott
.
.
.
commit
|
commitdiff
|
tree
2009-01-20
cjfields
sync with main trunk
commit
|
commitdiff
|
tree
2009-01-16
c
j
fields
In
c
.
RC v
e
rsion
commit
|
commitdiff
|
tree
2009-01-16
cj
f
ields
carry
o
ver test fixes fro
m
tr
u
nk
commit
|
commitdiff
|
tree
2009-01-16
cjfields
Carr
y
ove
r
test change from
m
a
i
n trunk
commit
|
commitdiff
|
tree
2009-01-16
c
jf
i
elds
Sync with main
trunk
commit
|
commitdiff
|
tree
2009-01-13
cjfields
Sync with main tr
u
nk
commit
|
commitdiff
|
tree
2009-01-13
cjfields
Sync with main trun
k
commit
|
commitdiff
|
tree
2009-01-06
c
jfield
s
Sync with
t
runk
.
T
h
is will appear in
fina
l
release
.
commit
|
commitdiff
|
tree
2009-01-06
cjfields
Resolve conflict (c
a
n
'
t
directly m
e
rge since
tr
u
nk
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
cj
f
i
elds
Sy
n
c that last bit with t
r
unk
.
I'll
have
to merge
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
cjfields
Sync
with trunk
commit
|
commitdiff
|
tree
2009-01-05
cj
f
ields
Bump R
C
to
2
; will tag
,
bag, and ship
tomo
r
row after
.
.
.
commit
|
commitdiff
|
tree
2009-01-05
cj
f
ie
l
ds
Sy
n
c with trunk
commit
|
commitdiff
|
tree
2009-01-04
cjfields
sy
n
c with trunk
commit
|
commitdiff
|
tree
2009-01-02
cjfields
syn
c
from trunk
commit
|
commitdiff
|
tree
2009-01-02
c
jfields
sync
l
a
s
t commit
commit
|
commitdiff
|
tree
2009-01-02
cjfie
l
ds
sync
w
ith
H
EAD
commit
|
commitdiff
|
tree
2009-01-02
cjfield
s
Remove t/Graphics
commit
|
commitdiff
|
tree
2009-01-02
cjf
i
elds
Re
m
ove Bio
:
:Graphics
e
x
amples and scripts
commit
|
commitdiff
|
tree
2008-12-26
cjfields
e
mpty dir
e
ctory
commit
|
commitdiff
|
tree
2008-12-26
cjfields
Em
p
t
y directory
commit
|
commitdiff
|
tree
2008-12-26
cj
f
ields
empty direc
t
o
r
y
commit
|
commitdiff
|
tree
2008-12-26
cjfields
sy
n
c with tr
u
nk
commit
|
commitdiff
|
tree
2008-12-24
cj
f
ields
small clarification
commit
|
commitdiff
|
tree
2008-12-24
cj
f
ields
Add list of b
u
gs s
l
ated for th
e
1
.
6
.
x se
r
ies
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Updates
for RC1
commit
|
commitdiff
|
tree
2008-12-24
cjfields
remove
M
icroar
r
ay deps
commit
|
commitdiff
|
tree
2008-12-24
cjfield
s
Sm
a
ll fix f
o
r tests
JIC th
e
re is a
n
etwork er
r
or
commit
|
commitdiff
|
tree
2008-12-24
cjfie
l
ds
Sy
n
c
b
r
a
nch with trunk
commit
|
commitdiff
|
tree
2008-12-24
cjfi
e
lds
Remove Bio::Microa
r
r
a
y f
r
om
b
ranch (still
in develo
p
ment
.
.
.
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Remo
v
e (merge
d
idn't remove this for so
m
e reason)
commit
|
commitdiff
|
tree
2008-12-24
cjfiel
d
s
Remove
(merge
didn't remove this for so
m
e
reason)
commit
|
commitdiff
|
tree
2008-12-22
cjfields
s
yn
c
trunk with br
a
nch
commit
|
commitdiff
|
tree
2008-12-20
cjfi
e
lds
5
.
6
.
1 is
m
i
n
perl versio
n
requi
r
ed
fo
r
a
l
l cor
e
m
odules now
commit
|
commitdiff
|
tree
2008-12-19
cjf
i
elds
update NAMES
commit
|
commitdiff
|
tree
2008-12-19
cj
f
ields
s
mall typo
commit
|
commitdiff
|
tree
2008-12-18
cjf
i
elds
typo
commit
|
commitdiff
|
tree
2008-12-18
cj
f
ields
[b
u
g 2714]
commit
|
commitdiff
|
tree
2008-12-17
cjfie
l
d
s
fix tes
t
num
b
er
commit
|
commitdiff
|
tree
2008-12-17
cjfiel
d
s
update Test:
:
Warn
(fixes Qua
l
.
t test problems w
i
th
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfields
mi
s
sed o
n
e
commit
|
commitdiff
|
tree
2008-12-16
cjfields
EUtilities
r
emote tests ba
c
k online (simple tests only)
commit
|
commitdiff
|
tree
2008-12-16
cjfields
E
U
tilities remote
t
est
s
back
o
nline (simple
test
s
o
nly)
commit
|
commitdiff
|
tree
2008-12-16
cjfields
You must a
c
tually te
s
t data if you want
this module
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfie
l
ds
D
on't u
s
e
p
rint!
C
hanging to $self->debu
g
or c
o
mmenting
ou
t
commit
|
commitdiff
|
tree
2008-12-16
c
j
fields
Bio
:
:Gr
a
ph d
e
p
rec
a
ted
i
n 1
.
6
commit
|
commitdiff
|
tree
2008-12-16
cjfields
st
i
fle warnings w
h
en passing string in
s
tead of
i
nt
e
ger
commit
|
commitdiff
|
tree
2008-12-16
cj
f
ie
l
ds
hash
ref, not array
r
e
f
commit
|
commitdiff
|
tree
2008-12-16
cj
f
ields
[bug 2637
]
commit
|
commitdiff
|
tree
2008-12-16
cjfield
s
[b
u
g 2
6
3
7
]
commit
|
commitdiff
|
tree
2008-12-16
c
j
fields
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-16
c
j
fields
[bu
g
2637]
commit
|
commitdiff
|
tree
2008-12-15
c
jf
i
e
l
ds
[b
u
g 2637]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
[bug 2712]
commit
|
commitdiff
|
tree
2008-12-15
cjf
i
e
l
ds
score
s
commit
|
commitdiff
|
tree
2008-12-15
cjfields
r
emain
i
ng tests for Bio::To
o
l::EUtilities
commit
|
commitdiff
|
tree
2008-12-15
cjfields
more
test data
commit
|
commitdiff
|
tree
2008-12-15
cjfields
Updates
:
commit
|
commitdiff
|
tree
2008-12-13
cjfie
l
ds
i
nitial batch of EUtilP
a
r
a
meters tests
commit
|
commitdiff
|
tree
2008-12-13
c
jfiel
d
s
einf
o
te
s
ts
commit
|
commitdiff
|
tree
2008-12-12
cj
f
ields
some EUti
l
ities tests (pa
r
sing f
r
om files)
commit
|
commitdiff
|
tree
2008-12-12
cjfields
some test data for
B
io::Tools::EUti
l
i
t
i
es
commit
|
commitdiff
|
tree
2008-12-12
cjf
i
elds
updates to
E
Uti
l
i
t
ies (getting ready
for
d
ocs, t
e
sts
.
.
.
commit
|
commitdiff
|
tree
2008-12-12
cjfields
Move EU
t
ilPar
a
met
e
rs t
o
To
o
ls
(
seems more
a
ppropriate)
commit
|
commitdiff
|
tree
2008-12-11
cjfields
fi
x
for bug when
g
e
t
t
ing cached
respon
s
e with filenam
e
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfields
small pointer to wik
i
page (will
u
pdate along with
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cj
f
ields
small update
commit
|
commitdiff
|
tree
2008-12-11
cjfields
u
pda
t
es
commit
|
commitdiff
|
tree
2008-12-11
cj
f
i
e
lds
return, not 'return undef'
commit
|
commitdiff
|
tree
2008-12-11
cjfields
r
etu
r
n, not 'return undef'
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[bug 26
9
9]
commit
|
commitdiff
|
tree
2008-12-11
c
j
f
i
e
l
ds
[bug 2
6
99]
commit
|
commitdiff
|
tree
2008-12-11
cjfie
l
ds
[bug 2707]
commit
|
commitdiff
|
tree
2008-12-10
cjfields
Remov
i
ng f
r
o
m
HEAD (d
e
precated for 1
.
6)
commit
|
commitdiff
|
tree
2008-12-10
c
j
fie
l
ds
mini
pod fix
commit
|
commitdiff
|
tree
2008-12-10
cjfi
e
lds
update deprecati
o
n list
commit
|
commitdiff
|
tree
2008-12-10
c
j
fields
rem
o
ve Bio:
:
Grap
h
ics (sepa
r
a
te
p
ac
k
a
g
e now)
commit
|
commitdiff
|
tree
2008-12-10
cjfields
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-10
cjfields
Re
m
ove depe
n
d
encies fo
r
Bio::Graphic
s
a
n
d d
e
pr
e
c
ate
d
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Squas
h
w
a
rning
commit
|
commitdiff
|
tree
2008-12-09
c
j
fie
l
ds
diag(
)
only on ver
b
ose
commit
|
commitdiff
|
tree
2008-12-09
c
j
f
i
elds
Fix
last loo
p
tests, move
some to can_ok
commit
|
commitdiff
|
tree
2008-12-09
cj
f
i
el
d
s
Modi
f
y to test new tem
p
classes and ensure that added
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfield
s
update Mauric
i
o
's
e
m
ai
l
commit
|
commitdiff
|
tree
2008-12-08
cj
f
ields
Update Roy's email
commit
|
commitdiff
|
tree
2008-12-08
cjf
i
e
l
ds
R
oy's email (and bioperl
.
org not b
i
operl
.
edu)
commit
|
commitdiff
|
tree
2008-12-08
cjfields
Updated
e
mail
s
commit
|
commitdiff
|
tree
2008-12-07
cjfields
[bug 2699]
commit
|
commitdiff
|
tree
2008-12-05
cjfi
e
lds
Need t
o
retrieve t
h
e tree for
o
utput
commit
|
commitdiff
|
tree
2008-12-05
cjfields
[
bug 2450
]
commit
|
commitdiff
|
tree
2008-12-04
cjfields
Mak
e
T
a
rg
e
t a true
D
BLi
n
k
commit
|
commitdiff
|
tree
2008-12-04
cjfields
Directo
r
y
i
s
n
o longer
nee
d
ed (Heikki spli
t
this up
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cjfields
a
d
d for
c
e_nse
tests
commit
|
commitdiff
|
tree
2008-12-03
cjfield
s
leav
e
ID unde
f
in
e
d if
i
t isn'
t
prese
n
t,
but
a
llow the
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Remove
f
i
les accid
e
n
t
ly
add
e
d from last commit
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Reorgani
z
e Tool
s
te
s
t
s
(ne
e
d
s
some
more splitting)
commit
|
commitdiff
|
tree
2008-12-03
c
j
fields
Remove (tests are r
e
dundant, in Conse
d
.
t)
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Merge
t
ests and remove redundant
f
ile
commit
|
commitdiff
|
tree
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