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sync with main trunk
2009-01-20
cjf
i
elds
sy
n
c with main trunk
commit
|
commitdiff
|
tree
2009-01-16
c
j
field
s
In
c
.
R
C
version
commit
|
commitdiff
|
tree
2009-01-16
cj
f
ields
carry
over
t
est fixes from trunk
commit
|
commitdiff
|
tree
2009-01-16
cjfields
Carry over t
e
st cha
n
ge fr
o
m main trunk
commit
|
commitdiff
|
tree
2009-01-16
cjfi
e
l
d
s
Syn
c
with mai
n
trunk
commit
|
commitdiff
|
tree
2009-01-13
c
j
fields
Sync with
m
ain trunk
commit
|
commitdiff
|
tree
2009-01-13
c
jfiel
d
s
Sync with main t
r
u
n
k
commit
|
commitdiff
|
tree
2009-01-06
c
j
f
ields
Sync with trunk
.
This will appear
in final release
.
commit
|
commitdiff
|
tree
2009-01-06
cjfields
R
e
s
o
lve conflict (c
a
n'
t
direc
t
l
y merge since
t
ru
n
k
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
c
jfiel
d
s
Sync that last bit with trunk
.
I'll have to merg
e
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
cjfields
Sync with trunk
commit
|
commitdiff
|
tree
2009-01-05
cjfields
Bump RC t
o
2
; will ta
g
, bag, and ship tomorrow aft
e
r
.
.
.
commit
|
commitdiff
|
tree
2009-01-05
c
j
fie
l
ds
Sy
n
c
w
ith trunk
commit
|
commitdiff
|
tree
2009-01-04
cjfields
sync
w
i
th t
r
unk
commit
|
commitdiff
|
tree
2009-01-02
cjfields
sync from trunk
commit
|
commitdiff
|
tree
2009-01-02
cjf
i
elds
sync
l
a
s
t commit
commit
|
commitdiff
|
tree
2009-01-02
cj
f
ields
sy
n
c with
HEAD
commit
|
commitdiff
|
tree
2009-01-02
cjfields
R
emo
v
e t/Graphi
c
s
commit
|
commitdiff
|
tree
2009-01-02
cj
f
ields
Remo
v
e Bio::G
r
aphics examples
a
nd
scripts
commit
|
commitdiff
|
tree
2008-12-26
cjf
i
elds
empty
direct
o
ry
commit
|
commitdiff
|
tree
2008-12-26
cjfields
Empty directory
commit
|
commitdiff
|
tree
2008-12-26
cjfields
empty dir
e
ctory
commit
|
commitdiff
|
tree
2008-12-26
cjfields
sync wit
h
t
run
k
commit
|
commitdiff
|
tree
2008-12-24
c
jfields
sm
a
ll cl
a
rification
commit
|
commitdiff
|
tree
2008-12-24
cjfields
A
dd l
i
st of bugs
s
lated for
the 1
.
6
.
x ser
i
es
commit
|
commitdiff
|
tree
2008-12-24
cjf
i
e
l
ds
Up
d
ate
s
for RC1
commit
|
commitdiff
|
tree
2008-12-24
c
j
fields
remove Microarray de
p
s
commit
|
commitdiff
|
tree
2008-12-24
cjfields
S
m
a
ll fix for
t
ests JIC there is a netw
o
rk error
commit
|
commitdiff
|
tree
2008-12-24
cj
f
iel
d
s
Sy
n
c
b
ranc
h
wi
t
h
t
r
u
nk
commit
|
commitdiff
|
tree
2008-12-24
cjfield
s
Remove Bio::Microarray from branch (still in dev
e
lopment
.
.
.
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Remove (merge didn't remove this for so
m
e reason)
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Remove (mer
g
e
d
i
dn't r
e
move this fo
r
som
e
rea
s
on)
commit
|
commitdiff
|
tree
2008-12-22
cjfields
syn
c
trunk w
i
th
b
ranch
commit
|
commitdiff
|
tree
2008-12-20
cjfi
e
lds
5
.
6
.
1 i
s
m
in perl version
requi
r
ed f
o
r all co
r
e mod
u
les n
o
w
commit
|
commitdiff
|
tree
2008-12-19
c
jfiel
d
s
up
d
ate NAMES
commit
|
commitdiff
|
tree
2008-12-19
c
jfi
e
lds
small t
y
po
commit
|
commitdiff
|
tree
2008-12-18
cjfields
typo
commit
|
commitdiff
|
tree
2008-12-18
c
jfi
e
ld
s
[
bug
2
7
14]
commit
|
commitdiff
|
tree
2008-12-17
cjfield
s
fix test
number
commit
|
commitdiff
|
tree
2008-12-17
cjfields
upd
a
te T
e
st::Warn
(
fixes Q
u
al
.
t test
p
roblems with
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfields
missed one
commit
|
commitdiff
|
tree
2008-12-16
cjfields
EU
t
ilit
i
e
s remote tests back onlin
e
(
s
i
mpl
e
t
e
sts only)
commit
|
commitdiff
|
tree
2008-12-16
c
j
fi
e
lds
EUtilities remot
e
tests ba
c
k on
l
ine (
s
imple tests only)
commit
|
commitdiff
|
tree
2008-12-16
cj
f
ields
You must a
c
tual
l
y
test data if you
w
ant this m
o
dule
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjf
i
el
d
s
Don't us
e
print! Changin
g
to $s
e
lf
-
>debug or commenting out
commit
|
commitdiff
|
tree
2008-12-16
cjfie
l
ds
B
io::Graph d
e
precat
e
d in 1
.
6
commit
|
commitdiff
|
tree
2008-12-16
c
j
fiel
d
s
stifle warnings when pas
s
ing
s
tr
i
n
g inst
e
ad o
f
integer
commit
|
commitdiff
|
tree
2008-12-16
c
j
fields
hash
r
ef, not array ref
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug
2637]
commit
|
commitdiff
|
tree
2008-12-16
cjfiel
d
s
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-16
cjfield
s
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-16
c
jfield
s
[
b
ug 2
6
37]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
[bug
2637]
commit
|
commitdiff
|
tree
2008-12-15
cj
f
ields
[b
u
g 271
2
]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
scores
commit
|
commitdiff
|
tree
2008-12-15
c
jfields
remaining tests
f
or
B
io::Tool::EUtil
i
ties
commit
|
commitdiff
|
tree
2008-12-15
cjfield
s
more test dat
a
commit
|
commitdiff
|
tree
2008-12-15
cjfields
Updates:
commit
|
commitdiff
|
tree
2008-12-13
cj
f
iel
d
s
ini
t
ial bat
c
h o
f
EUtilParamet
e
rs tes
t
s
commit
|
commitdiff
|
tree
2008-12-13
cjfield
s
einfo
te
s
ts
commit
|
commitdiff
|
tree
2008-12-12
c
j
fi
e
lds
some EUtilities
t
ests (parsing from files
)
commit
|
commitdiff
|
tree
2008-12-12
c
j
fields
some test data
f
or Bio::Tools::EUtilities
commit
|
commitdiff
|
tree
2008-12-12
cjfields
u
pdates to E
U
tilities (getting r
e
ady for
docs, t
e
st
s
.
.
.
commit
|
commitdiff
|
tree
2008-12-12
c
jfiel
d
s
Move EU
t
ilParameters
to Tool
s
(seems mor
e
appropria
t
e)
commit
|
commitdiff
|
tree
2008-12-11
c
j
fields
fix for
b
ug when
g
etting ca
c
hed respo
n
se wi
t
h filename
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfields
small
pointer to w
i
ki pag
e
(wi
l
l update along with
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfields
small up
d
ate
commit
|
commitdiff
|
tree
2008-12-11
c
j
fields
u
pd
a
tes
commit
|
commitdiff
|
tree
2008-12-11
cjfields
return, not 'return u
n
def'
commit
|
commitdiff
|
tree
2008-12-11
c
j
f
ields
return, not 'return unde
f
'
commit
|
commitdiff
|
tree
2008-12-11
cjf
i
elds
[b
u
g
2699]
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[bug 2699]
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[bug 2707]
commit
|
commitdiff
|
tree
2008-12-10
cjfields
Removing fro
m
HEAD (deprecated for 1
.
6)
commit
|
commitdiff
|
tree
2008-12-10
c
jfi
e
lds
m
i
ni pod fix
commit
|
commitdiff
|
tree
2008-12-10
cjfields
update depr
e
cation list
commit
|
commitdiff
|
tree
2008-12-10
cjfields
remove B
i
o::Graphics (s
e
parate package no
w
)
commit
|
commitdiff
|
tree
2008-12-10
c
jfiel
d
s
[bug 2637
]
commit
|
commitdiff
|
tree
2008-12-10
cjf
i
elds
Remove
d
e
pe
n
dencies
f
or Bio::Gra
p
hics
a
n
d deprecated
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Squash war
n
i
n
g
commit
|
commitdiff
|
tree
2008-12-09
c
j
f
ields
diag() only
on verbose
commit
|
commitdiff
|
tree
2008-12-09
c
j
fields
F
i
x last loop t
e
sts, move some
t
o can_ok
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Modi
f
y
t
o
test
new
t
e
m
p
cla
s
ses a
n
d ensure that
added
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfiel
d
s
update Maur
i
cio's em
a
il
commit
|
commitdiff
|
tree
2008-12-08
cjfi
e
lds
Up
d
ate Roy's e
m
ail
commit
|
commitdiff
|
tree
2008-12-08
cjfields
Roy's email (and bioperl
.
o
rg not bioperl
.
ed
u
)
commit
|
commitdiff
|
tree
2008-12-08
c
j
fields
Updated e
m
ails
commit
|
commitdiff
|
tree
2008-12-07
cj
f
ields
[bug 2699]
commit
|
commitdiff
|
tree
2008-12-05
c
j
f
i
e
lds
Need t
o
retrieve the tree f
o
r
output
commit
|
commitdiff
|
tree
2008-12-05
cjfields
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-04
cjfi
e
lds
Make Target a true DBLink
commit
|
commitdiff
|
tree
2008-12-04
c
jfie
l
ds
Director
y
is no longer n
e
e
d
e
d
(Heikki
s
plit this
up
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cjfields
add f
o
r
c
e_nse
t
ests
commit
|
commitdiff
|
tree
2008-12-03
cjfiel
d
s
leave ID u
n
defined if
i
t isn'
t
prese
n
t,
b
ut
allow the
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cj
f
ie
l
d
s
R
e
move fi
l
es accidently added from last commit
commit
|
commitdiff
|
tree
2008-12-03
cjfields
R
eorganize Tools te
s
t
s
(needs some more splitting)
commit
|
commitdiff
|
tree
2008-12-03
cjfiel
d
s
Remove (t
e
sts are r
e
dun
d
ant, i
n
Consed
.
t)
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Merge tests and remov
e
redundant file
commit
|
commitdiff
|
tree
2008-12-03
c
j
f
ield
s
Update
t
est count
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Merge tes
t
s
commit
|
commitdiff
|
tree
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