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sync last commit
2009-01-21
cjfie
l
ds
sync
l
ast
c
o
mmit
commit
|
commitdiff
|
tree
2009-01-21
cjfields
* sync
w
ith trunk
commit
|
commitdiff
|
tree
2009-01-21
cjfields
* sync with trunk
commit
|
commitdiff
|
tree
2009-01-21
cj
f
ields
* de
l
ete Bio::DB
:
:SeqFeature::St
o
re
:
:DBI::Pg pe
r
Scott
.
.
.
commit
|
commitdiff
|
tree
2009-01-20
cj
f
ields
sync with main trun
k
commit
|
commitdiff
|
tree
2009-01-16
cj
f
ields
Inc
.
RC version
commit
|
commitdiff
|
tree
2009-01-16
cjfields
carry over test
fixes
f
r
om
t
runk
commit
|
commitdiff
|
tree
2009-01-16
cj
f
ields
C
a
rr
y
over test chang
e
from main trunk
commit
|
commitdiff
|
tree
2009-01-16
c
j
fields
S
ync with mai
n
trunk
commit
|
commitdiff
|
tree
2009-01-13
c
j
fie
l
ds
Sync with main trunk
commit
|
commitdiff
|
tree
2009-01-13
c
j
fields
Sync with main tru
n
k
commit
|
commitdiff
|
tree
2009-01-06
cjfields
Sync with trunk
.
T
h
is w
i
ll appe
a
r
in final r
e
lease
.
commit
|
commitdiff
|
tree
2009-01-06
cjfield
s
Resolve conflict (can't directly merge
since tr
u
nk
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
cjfields
S
y
nc that
last
bit with trunk
.
I'll
h
a
ve to merge
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
cjfields
Sync with trunk
commit
|
commitdiff
|
tree
2009-01-05
cjfields
Bump RC
to 2; will tag, bag, and
s
hip tomorrow after
.
.
.
commit
|
commitdiff
|
tree
2009-01-05
cjfi
e
lds
Sync with trunk
commit
|
commitdiff
|
tree
2009-01-04
c
jfields
s
y
nc with trunk
commit
|
commitdiff
|
tree
2009-01-02
cjf
i
elds
s
y
nc fro
m
trunk
commit
|
commitdiff
|
tree
2009-01-02
cj
f
i
elds
sync last commi
t
commit
|
commitdiff
|
tree
2009-01-02
cjfields
sync w
i
t
h
HEAD
commit
|
commitdiff
|
tree
2009-01-02
cjfields
Remove
t/Graphi
c
s
commit
|
commitdiff
|
tree
2009-01-02
cjfie
l
ds
Remov
e
B
io::Graphi
c
s
exam
p
les
a
nd
s
c
r
ipts
commit
|
commitdiff
|
tree
2008-12-26
cjfields
empty direc
t
ory
commit
|
commitdiff
|
tree
2008-12-26
cjfields
Emp
t
y directory
commit
|
commitdiff
|
tree
2008-12-26
cjfiel
d
s
em
p
t
y
directory
commit
|
commitdiff
|
tree
2008-12-26
cjfiel
d
s
sync with
t
runk
commit
|
commitdiff
|
tree
2008-12-24
c
j
fields
small clarific
a
tion
commit
|
commitdiff
|
tree
2008-12-24
cjfie
l
ds
A
dd list o
f
bugs slated fo
r
th
e
1
.
6
.
x
seri
e
s
commit
|
commitdiff
|
tree
2008-12-24
cj
f
ields
Updates for RC1
commit
|
commitdiff
|
tree
2008-12-24
cjfi
e
l
d
s
remove Micr
o
array
d
eps
commit
|
commitdiff
|
tree
2008-12-24
c
jfiel
d
s
S
m
a
ll fix
for tes
t
s JI
C
there
i
s a network error
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Sync branch with tru
n
k
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Remove Bio::
M
icroarray from branch
(
stil
l
in
d
e
v
e
lopment
.
.
.
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Rem
o
ve (merge didn'
t
remove this for some reason
)
commit
|
commitdiff
|
tree
2008-12-24
cjf
i
el
d
s
Remove (me
r
ge didn't r
e
m
ove this
f
or some
r
eason)
commit
|
commitdiff
|
tree
2008-12-22
cj
f
iel
d
s
sync trunk with branch
commit
|
commitdiff
|
tree
2008-12-20
c
jfields
5
.
6
.
1 is min perl version requir
e
d
for
a
ll core
mo
d
ules now
commit
|
commitdiff
|
tree
2008-12-19
c
j
fields
update NAMES
commit
|
commitdiff
|
tree
2008-12-19
cjfields
small typo
commit
|
commitdiff
|
tree
2008-12-18
cj
f
ield
s
typo
commit
|
commitdiff
|
tree
2008-12-18
cjfields
[bug 2714]
commit
|
commitdiff
|
tree
2008-12-17
cj
f
ield
s
fix test number
commit
|
commitdiff
|
tree
2008-12-17
cjfi
e
l
d
s
up
d
ate Test::Warn (fixes Qual
.
t test p
r
oblems with
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfields
m
i
ssed one
commit
|
commitdiff
|
tree
2008-12-16
cjfields
EUtilities remote tests
bac
k
o
n
l
ine
(
si
m
ple tests
o
n
ly)
commit
|
commitdiff
|
tree
2008-12-16
cjf
i
elds
E
U
ti
l
ities remo
t
e tes
t
s back onli
n
e (simple
tests onl
y
)
commit
|
commitdiff
|
tree
2008-12-16
cjfields
You m
u
st actu
a
l
ly test data
if you
w
ant this module
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfields
Don't use print
!
Changing to
$
self->debug or commentin
g
ou
t
commit
|
commitdiff
|
tree
2008-12-16
c
jf
i
elds
Bio::Graph depreca
t
e
d
i
n 1
.
6
commit
|
commitdiff
|
tree
2008-12-16
cj
f
ields
st
i
fle
w
arni
n
g
s when passing
s
tring instead of int
e
ger
commit
|
commitdiff
|
tree
2008-12-16
cjfields
ha
s
h
r
ef, not array ref
commit
|
commitdiff
|
tree
2008-12-16
c
j
fie
l
ds
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-16
cjf
i
elds
[
b
u
g 2637]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug 26
3
7
]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug 2637
]
commit
|
commitdiff
|
tree
2008-12-15
cj
f
ields
[bug 2
6
37
]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
[bug 2712]
commit
|
commitdiff
|
tree
2008-12-15
c
j
f
i
e
lds
s
c
o
res
commit
|
commitdiff
|
tree
2008-12-15
cjfields
remaini
n
g te
s
ts for
B
io::Tool::EUtilit
i
es
commit
|
commitdiff
|
tree
2008-12-15
cjfields
more
test
d
ata
commit
|
commitdiff
|
tree
2008-12-15
cjfields
U
p
dates:
commit
|
commitdiff
|
tree
2008-12-13
cjf
i
elds
initial batch of EUtilParame
t
er
s
tests
commit
|
commitdiff
|
tree
2008-12-13
cjfields
einfo tests
commit
|
commitdiff
|
tree
2008-12-12
cj
f
ields
s
ome
E
U
tilitie
s
tests (par
s
i
n
g from fi
l
es
)
commit
|
commitdiff
|
tree
2008-12-12
c
j
fields
some test d
a
ta for Bio:
:
Tools::EUtilities
commit
|
commitdiff
|
tree
2008-12-12
cjfields
updat
e
s to EU
t
ilities (getting r
e
a
dy
for docs,
t
est
s
.
.
.
commit
|
commitdiff
|
tree
2008-12-12
cjfields
Mov
e
EUtilParameters to To
o
ls (s
e
ems
m
o
re ap
p
ropriate)
commit
|
commitdiff
|
tree
2008-12-11
cjfields
fix for bug wh
e
n g
e
tting ca
c
hed respon
s
e
with fi
l
ename
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfields
sm
a
ll pointer to wiki page (will upd
a
te along w
i
t
h
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfield
s
small
update
commit
|
commitdiff
|
tree
2008-12-11
cj
f
iel
d
s
upd
a
te
s
commit
|
commitdiff
|
tree
2008-12-11
cjfields
return, not
'
retu
r
n unde
f
'
commit
|
commitdiff
|
tree
2008-12-11
cjf
i
elds
r
e
t
u
rn,
n
ot
'
re
t
urn un
d
ef'
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[bug 2699]
commit
|
commitdiff
|
tree
2008-12-11
cj
f
ields
[bug 26
9
9]
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[bug 2
7
0
7
]
commit
|
commitdiff
|
tree
2008-12-10
cjfields
Re
m
o
v
ing from
HEAD (deprecated for 1
.
6)
commit
|
commitdiff
|
tree
2008-12-10
cjfields
mini
p
od fix
commit
|
commitdiff
|
tree
2008-12-10
cjfields
updat
e
deprecation
l
ist
commit
|
commitdiff
|
tree
2008-12-10
cjfields
r
e
move Bio
:
:Graphics (separate
p
ac
k
age no
w
)
commit
|
commitdiff
|
tree
2008-12-10
cjfields
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-10
c
j
fields
Re
m
ove dependencies for Bio::Graphi
c
s and deprecated
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfield
s
Squash
w
arning
commit
|
commitdiff
|
tree
2008-12-09
cjf
i
e
l
ds
di
a
g
(
) only
o
n verbose
commit
|
commitdiff
|
tree
2008-12-09
cjfie
l
d
s
Fix last loop tes
t
s, move
s
ome to can_ok
commit
|
commitdiff
|
tree
2008-12-09
cjf
i
elds
Modif
y
to test new temp c
l
a
s
ses and ensu
r
e that a
d
d
e
d
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfields
update Mauric
i
o's
email
commit
|
commitdiff
|
tree
2008-12-08
cjfields
Update Roy's email
commit
|
commitdiff
|
tree
2008-12-08
cjfields
R
o
y
's email (and bioperl
.
org not bioperl
.
ed
u
)
commit
|
commitdiff
|
tree
2008-12-08
c
j
field
s
Updat
e
d emails
commit
|
commitdiff
|
tree
2008-12-07
cjfields
[bug 2699]
commit
|
commitdiff
|
tree
2008-12-05
cjfields
Need to
retriev
e
t
he tree for
o
ut
p
ut
commit
|
commitdiff
|
tree
2008-12-05
cjfields
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-04
cjfie
l
d
s
Make Ta
r
get a
t
r
u
e DBLink
commit
|
commitdiff
|
tree
2008-12-04
cjf
i
el
d
s
Directory is no
l
o
n
ger needed (Heikki split
t
h
i
s up
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cjfields
add force_nse tests
commit
|
commitdiff
|
tree
2008-12-03
cjfields
leave
I
D undef
i
n
e
d
if
it isn
'
t present, but allow the
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
c
jfields
Remove files accidently adde
d
f
r
o
m last commit
commit
|
commitdiff
|
tree
2008-12-03
cjfiel
d
s
Reorganize Tools
t
ests
(needs some more splitting)
commit
|
commitdiff
|
tree
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