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sync last commit
2009-01-21
cjf
i
elds
s
y
nc la
s
t commit
commit
|
commitdiff
|
tree
2009-01-21
c
j
fields
* sync wi
t
h trunk
commit
|
commitdiff
|
tree
2009-01-21
cjfi
e
lds
*
sync with trunk
commit
|
commitdiff
|
tree
2009-01-21
cjfields
* del
e
te Bio::DB::SeqFeat
u
re::Store::DBI::Pg per
S
cott
.
.
.
commit
|
commitdiff
|
tree
2009-01-20
cj
f
i
e
ld
s
sync with mai
n
trunk
commit
|
commitdiff
|
tree
2009-01-16
cjfield
s
Inc
.
RC
v
ersion
commit
|
commitdiff
|
tree
2009-01-16
cjfields
carry over
t
est f
i
xes fro
m
trunk
commit
|
commitdiff
|
tree
2009-01-16
c
jfields
Carry
ove
r
test c
h
ange from main trunk
commit
|
commitdiff
|
tree
2009-01-16
cjfields
Sync
wi
t
h main trunk
commit
|
commitdiff
|
tree
2009-01-13
c
jfi
e
ld
s
S
y
n
c with main
trunk
commit
|
commitdiff
|
tree
2009-01-13
cjf
i
elds
Syn
c
with main
trun
k
commit
|
commitdiff
|
tree
2009-01-06
cjfields
S
ync with t
r
unk
.
T
h
i
s
w
i
ll appear
in
f
i
n
al release
.
commit
|
commitdiff
|
tree
2009-01-06
cjf
i
el
d
s
Resolve
confli
c
t (can't
directly merge since trunk
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
cj
f
ie
l
ds
Sync that la
s
t bit wit
h
tru
n
k
.
I
'
ll hav
e
to merge
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
cjfi
e
l
d
s
Sync with
t
r
u
nk
commit
|
commitdiff
|
tree
2009-01-05
cj
f
ields
Bump RC to 2; will
t
a
g,
b
ag, and ship tomorrow af
t
e
r
.
.
.
commit
|
commitdiff
|
tree
2009-01-05
cjfields
Sy
n
c
w
ith t
r
unk
commit
|
commitdiff
|
tree
2009-01-04
cjfields
sync with trunk
commit
|
commitdiff
|
tree
2009-01-02
cjfields
sync from trun
k
commit
|
commitdiff
|
tree
2009-01-02
cjfields
sync last com
m
it
commit
|
commitdiff
|
tree
2009-01-02
cjfields
sync with
H
E
AD
commit
|
commitdiff
|
tree
2009-01-02
cjfie
l
ds
Remove t
/
Graph
i
cs
commit
|
commitdiff
|
tree
2009-01-02
cjfields
Remove Bio::G
r
aphics examples and scripts
commit
|
commitdiff
|
tree
2008-12-26
cj
f
ields
empty directory
commit
|
commitdiff
|
tree
2008-12-26
cjfields
Empty direc
t
ory
commit
|
commitdiff
|
tree
2008-12-26
cjfields
empty directory
commit
|
commitdiff
|
tree
2008-12-26
cjfiel
d
s
sync wi
t
h t
r
unk
commit
|
commitdiff
|
tree
2008-12-24
cj
f
ields
sm
a
ll cla
r
ificati
o
n
commit
|
commitdiff
|
tree
2008-12-24
c
jfi
e
lds
Add lis
t
of bugs slate
d
for the 1
.
6
.
x
s
eries
commit
|
commitdiff
|
tree
2008-12-24
cjfields
U
p
dat
e
s for RC1
commit
|
commitdiff
|
tree
2008-12-24
cjfields
rem
o
ve Micr
o
array deps
commit
|
commitdiff
|
tree
2008-12-24
cjfields
S
m
all fix for tests JIC there is a
n
etwork error
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Syn
c
branch
w
ith t
r
unk
commit
|
commitdiff
|
tree
2008-12-24
cjfield
s
Remove Bio::Microa
r
ray fr
o
m branch (still in development
.
.
.
commit
|
commitdiff
|
tree
2008-12-24
cjfields
R
emov
e
(merge didn't r
e
m
ove this for some
reason)
commit
|
commitdiff
|
tree
2008-12-24
cjfield
s
Remove
(merge did
n
't r
e
move this f
o
r
s
om
e
rea
s
on)
commit
|
commitdiff
|
tree
2008-12-22
cjfields
sync tr
u
nk with bran
c
h
commit
|
commitdiff
|
tree
2008-12-20
cj
f
ie
l
ds
5
.
6
.
1 is m
i
n per
l
vers
i
o
n
requi
r
ed for all cor
e
modules now
commit
|
commitdiff
|
tree
2008-12-19
cjfields
update NAMES
commit
|
commitdiff
|
tree
2008-12-19
cjfiel
d
s
small typo
commit
|
commitdiff
|
tree
2008-12-18
cjfiel
d
s
typo
commit
|
commitdiff
|
tree
2008-12-18
cjfi
e
lds
[bu
g
2714]
commit
|
commitdiff
|
tree
2008-12-17
cjfields
f
i
x test numbe
r
commit
|
commitdiff
|
tree
2008-12-17
cjfiel
d
s
update Te
s
t
::Warn (f
i
x
e
s Qual
.
t tes
t
probl
e
ms with
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfiel
d
s
m
i
ss
e
d one
commit
|
commitdiff
|
tree
2008-12-16
cjf
i
elds
EUtilities remote tests bac
k
onlin
e
(simple tests only)
commit
|
commitdiff
|
tree
2008-12-16
cjfie
l
ds
EUtilities remo
t
e
tests back
o
nline (si
m
ple tests only)
commit
|
commitdiff
|
tree
2008-12-16
c
jfields
You must
a
ctual
l
y t
e
st data if you w
a
nt th
i
s m
o
dul
e
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfields
D
o
n
'
t u
s
e pr
i
nt! Changi
n
g to $self->
d
e
b
ug or commen
t
ing out
commit
|
commitdiff
|
tree
2008-12-16
cjfields
Bio::Gr
a
ph
d
e
p
recated in 1
.
6
commit
|
commitdiff
|
tree
2008-12-16
cj
f
ie
l
d
s
stifl
e
warn
i
ngs when passing string instead of
i
n
t
eger
commit
|
commitdiff
|
tree
2008-12-16
cjfields
hash ref, not array ref
commit
|
commitdiff
|
tree
2008-12-16
cj
f
ields
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-16
c
jfiel
d
s
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
[
b
ug
2
637]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
[bug
2712]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
s
c
o
r
es
commit
|
commitdiff
|
tree
2008-12-15
cjfield
s
remaini
n
g
t
e
s
ts for B
i
o::Tool::EUtilities
commit
|
commitdiff
|
tree
2008-12-15
cjfi
e
lds
more
test data
commit
|
commitdiff
|
tree
2008-12-15
cjfie
l
d
s
Updates:
commit
|
commitdiff
|
tree
2008-12-13
c
jfields
initi
a
l batch of E
U
ti
l
Paramete
r
s tests
commit
|
commitdiff
|
tree
2008-12-13
cjfields
einfo te
s
ts
commit
|
commitdiff
|
tree
2008-12-12
cjfields
s
ome EUtilities tests (pars
i
ng from file
s
)
commit
|
commitdiff
|
tree
2008-12-12
cjfie
l
ds
so
m
e test da
t
a for Bio::Too
l
s
:
:EUtilities
commit
|
commitdiff
|
tree
2008-12-12
c
j
fields
u
p
d
a
tes
t
o
E
U
t
ili
t
ies (
g
etting ready for docs, tes
t
s
.
.
.
commit
|
commitdiff
|
tree
2008-12-12
c
j
fie
l
ds
Move EUti
l
Paramete
r
s to
Tools (
s
eems more ap
p
ropriate)
commit
|
commitdiff
|
tree
2008-12-11
cjfields
fix for bug when getti
n
g cached re
s
p
o
nse
w
i
th filename
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfi
e
lds
small p
o
i
nter to
wiki page (will update along with
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfields
small
up
d
ate
commit
|
commitdiff
|
tree
2008-12-11
cjfields
u
p
da
t
es
commit
|
commitdiff
|
tree
2008-12-11
cjfields
r
eturn,
n
ot 'r
e
turn
un
d
ef'
commit
|
commitdiff
|
tree
2008-12-11
cj
f
ie
l
ds
return
,
not 'retur
n
u
n
def'
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[bug
2
699]
commit
|
commitdiff
|
tree
2008-12-11
cjf
i
elds
[bug
2699]
commit
|
commitdiff
|
tree
2008-12-11
cjfie
l
d
s
[bug 2707
]
commit
|
commitdiff
|
tree
2008-12-10
cjf
i
el
d
s
Removin
g
from HEAD (depreca
t
e
d for 1
.
6)
commit
|
commitdiff
|
tree
2008-12-10
cjfield
s
min
i
pod
f
ix
commit
|
commitdiff
|
tree
2008-12-10
cjfield
s
u
pdate deprecat
i
o
n
list
commit
|
commitdiff
|
tree
2008-12-10
cjfields
r
emove
Bi
o
::Graphics (
s
eparat
e
package now)
commit
|
commitdiff
|
tree
2008-12-10
cjf
i
elds
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-10
cjfields
R
e
move dependenc
i
es for
B
i
o::Graphic
s
and d
e
pre
c
ated
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
c
jfields
Squash
wa
r
ning
commit
|
commitdiff
|
tree
2008-12-09
cjfields
diag
(
) only on verbose
commit
|
commitdiff
|
tree
2008-12-09
cjfiel
d
s
F
i
x
l
a
s
t loop tes
t
s,
m
ove some to can_ok
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Modify to
t
est new t
e
mp
classes and
e
nsure that added
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfields
update Mauricio's
email
commit
|
commitdiff
|
tree
2008-12-08
cjfield
s
Update Roy's email
commit
|
commitdiff
|
tree
2008-12-08
cjfi
e
l
ds
Roy's email (a
n
d b
i
operl
.
org not b
i
operl
.
edu
)
commit
|
commitdiff
|
tree
2008-12-08
cjfields
Updated emails
commit
|
commitdiff
|
tree
2008-12-07
cjfield
s
[bug 2699]
commit
|
commitdiff
|
tree
2008-12-05
cjfie
l
ds
Ne
e
d to retrieve t
h
e t
r
ee for output
commit
|
commitdiff
|
tree
2008-12-05
c
j
fiel
d
s
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-04
cjfield
s
M
a
ke Target a true DBLink
commit
|
commitdiff
|
tree
2008-12-04
c
j
fields
Directory
i
s
no
l
onger needed (Heikki split this
u
p
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cjfields
add f
o
r
ce_
n
se tests
commit
|
commitdiff
|
tree
2008-12-03
cjfields
leave ID u
n
defined
i
f it isn't
p
resent, but
all
o
w the
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Remove fi
l
es accidently added fr
o
m last
c
ommit
commit
|
commitdiff
|
tree
2008-12-03
c
jfie
l
d
s
Re
o
rganize Tool
s
tests (n
e
eds some mo
r
e sp
l
itti
n
g)
commit
|
commitdiff
|
tree
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