Removal of Bio::Tools::Phylo::PAML.pm and related modules, tests, and docs
commit1e64ab3dd676ba40af91e7924a8d1737e9e3e87c
authorCarnë Draug <carandraug+dev@gmail.com>
Fri, 8 Sep 2017 20:23:06 +0000 (8 21:23 +0100)
committerCarnë Draug <carandraug+dev@gmail.com>
Fri, 8 Sep 2017 20:23:06 +0000 (8 21:23 +0100)
tree91ee04c720f52d4a4517d33dfe7c9ebc73fc4cb5
parentdae4a6aea865aa60bdb4e9f4bc67a60785ba31a4
Removal of Bio::Tools::Phylo::PAML.pm and related modules, tests, and docs
36 files changed:
Bio/Tools/Phylo/PAML.pm [deleted file]
Bio/Tools/Phylo/PAML/Codeml.pm [deleted file]
Bio/Tools/Phylo/PAML/ModelResult.pm [deleted file]
Bio/Tools/Phylo/PAML/Result.pm [deleted file]
scripts/utilities/bp_pairwise_kaks.pl [deleted file]
t/Tools/Phylo/PAML.t [deleted file]
t/data/M0.mlc [deleted file]
t/data/aaml.mlc [deleted file]
t/data/aaml_pairwise.mlc [deleted file]
t/data/baseml.pairwise [deleted file]
t/data/baseml.usertree [deleted file]
t/data/branchSite.mlc [deleted file]
t/data/bug3331.mlc [deleted file]
t/data/codeml.mlc [deleted file]
t/data/codeml315.mlc [deleted file]
t/data/codeml4.mlc [deleted file]
t/data/codeml43.mlc [deleted file]
t/data/codeml43_nssites.mlc [deleted file]
t/data/codeml45.mlc [deleted file]
t/data/codeml_lysozyme/2NG.dN [deleted file]
t/data/codeml_lysozyme/2NG.dS [deleted file]
t/data/codeml_lysozyme/2NG.tt [deleted file]
t/data/codeml_lysozyme/4fold.nuc [deleted file]
t/data/codeml_lysozyme/lnf [deleted file]
t/data/codeml_lysozyme/lysozymeSmall.ctl [deleted file]
t/data/codeml_lysozyme/lysozymeSmall.trees [deleted file]
t/data/codeml_lysozyme/lysozymeSmall.txt [deleted file]
t/data/codeml_lysozyme/mlc [deleted file]
t/data/codeml_lysozyme/rst [deleted file]
t/data/codeml_lysozyme/rst1 [deleted file]
t/data/codeml_lysozyme/rub [deleted file]
t/data/codeml_nan.mlc [deleted file]
t/data/codeml_nssites.mlc [deleted file]
t/data/singleNSsite.mlc [deleted file]
t/data/yn00.mlc [deleted file]
t/data/yn00_45.mlc [deleted file]