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extended verbosity of the tile matching
2010-08-05
Stephan Saalfeld
exte
n
ded
ve
r
bosity of the tile ma
t
ching
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saalf
e
ld
Merge
bran
c
h 'master
'
of s
s
h://repo
.
or
.
c
z
/srv/git/trakem2
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saalfeld
Recovere
d
the most impo
r
tatn
o
f
Ignacio's previ
o
us
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saalfeld
Me
r
ge
br
a
nch 'master' into len
s
-model
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saalfeld
Created PolynomialModel2D, a wrapper
for
V
erena Kaynig's
commit
|
commitdiff
|
tree
2010-03-18
Ste
p
ha
n
Saalf
e
l
d
Added the maximal accepted factor to mean PointMatch
.
.
.
commit
|
commitdiff
|
tree
2010-03-17
S
t
ep
h
an Saalfeld
Remove m
a
tches w
i
t
h large displace
m
ent from
t
he c
o
nfiguratio
n
commit
|
commitdiff
|
tree
2010-02-23
Stephan Sa
a
lfeld
fixed cal
i
bration
of scaled snapshots when expo
r
t
i
ng
.
.
.
commit
|
commitdiff
|
tree
2010-02-22
Stephan Saalfeld
fixed calibration of
s
cal
e
d
s
napshot
s
commit
|
commitdiff
|
tree
2010-02-19
Stephan Saalfeld
A
lignTask: when deformi
n
g,
t
iles ARE al
r
e
a
dy in place
commit
|
commitdiff
|
tree
2010-02-19
St
e
p
h
an Saalfeld
AlignTask: Fixed missuse of a static variable
.
commit
|
commitdiff
|
tree
2010-02-19
Stephan Saalfe
l
d
Remove
t
he never u
s
ed shake method from abs
t
ract Model
.
commit
|
commitdiff
|
tree
2010-02-10
Stephan Saalfeld
Fixed a b
u
g
t
hat made th
e
original image appear
behind
commit
|
commitdiff
|
tree
2010-02-09
S
t
ephan Saalfeld
S
ynchronized sc
r
een
P
atchRan
g
es
commit
|
commitdiff
|
tree
2010-02-09
Stephan Saalfel
d
mi
n
o
r
cleanup in lensco
r
re
c
tion
commit
|
commitdiff
|
tree
2010-02-09
Ste
p
han Saalfeld
A
d
ded Transfor
m
MeshMappingWithMasks for more efficient
.
.
.
commit
|
commitdiff
|
tree
2010-02-09
Stephan Saalfeld
NonLi
n
earTransformMode can propaga
t
e the
transfor
m
ation
.
.
.
commit
|
commitdiff
|
tree
2010-02-07
Ste
p
han Saalfeld
F
o
r
no
w
, don
'
t scale
maxEpsilon
.
commit
|
commitdiff
|
tree
2010-02-07
S
t
epha
n
Saalfel
d
Align Mult
i
-Layer-Mosai
c
: Use up
to 2x maxOc
t
aveSi
z
e
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
S
tephan Saal
f
eld
F
i
nished the deform
o
p
eration to consider all
g
r
aphs
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan
S
aalf
e
ld
Fi
x
ed Float
.
M
IN_VA
L
UE to Float
.
M
A
X
_VALUE whe
r
e it
remained
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan
S
aalfeld
alignMu
l
tiL
a
yerMosaic finally uses graph-based pre
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan Sa
a
lfeld
cha
n
ged default
value of SIFT
.
m
a
xOctav
e
Si
z
e = 60
0
commit
|
commitdiff
|
tree
2010-01-29
Stephan Saal
f
e
l
d
fixed pa
i
rOverlappin
g
Tiles
(
L
i
st, L
i
s
t, Lis
t
[] )
commit
|
commitdiff
|
tree
2010-01-28
S
tephan Saalfeld
a
d
ded cor
r
e
spondence weight as
a
parameter
to
Alig
n
.
.
.
commit
|
commitdiff
|
tree
2009-11-17
Ste
p
han Sa
a
lfeld
Merge branch
'master' int
o
bun
w
arpj
commit
|
commitdiff
|
tree
2009-11-05
Stephan Saalfeld
M
erge
b
r
a
n
c
h
'master' in
t
o bun
w
arpj
commit
|
commitdiff
|
tree
2009-11-04
Step
h
an Saal
f
e
l
d
Merge
branch 'mas
t
e
r' into
b
unwarpj
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
F
i
x
e
d Comp
o
sit
e
Modes to w
o
rk in the foll
o
wing
c
on
f
ig
u
rat
i
ons
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
Rever
t
"
Wo
r
k arou
n
d a
n
noyi
n
g bug in
G
raphics2D,
i
n
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
Step
h
an Saalfeld
Fixe
d
CompositeModes t
o
work in the following configurations
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
Separating A
l
ignLayersTask from
A
li
g
nTask
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
Revert "Work around annoying
b
ug in Graphics2D, in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
S
teph
a
n
S
aalfel
d
M
e
rge branch 'm
a
ster' into comp
o
site-mo
d
es
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
AddARGB
C
o
m
posite ca
n
handle image
with
n
o
a
lpha
.
commit
|
commitdiff
|
tree
2009-11-03
St
e
phan Saalfeld
A
dded a comm
e
nt in Alig
n
commit
|
commitdiff
|
tree
2009-10-14
St
e
phan Saalfeld
refactor
e
d a misnamed meth
o
d
and
s
tatified
s
ome
p
aram
e
ters in
commit
|
commitdiff
|
tree
2009-10-14
Stephan Saalfeld
synchronized pot
e
ntially concurre
n
cy un
s
af
e
m
a
tch
i
ns
e
rt
i
on
.
.
.
commit
|
commitdiff
|
tree
2009-10-13
Stephan Saalfeld
F
i
xed th
e
geometry issues an
d
ad
d
ed support for
a
ll
.
.
.
commit
|
commitdiff
|
tree
2009-10-09
Step
h
an Saalfeld
Catchin
g
and ha
n
dling OutOfMemoryErrors in Featur
e
E
x
t
raction
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Stephan Sa
a
lfeld
Cosmetics
in
A
lig
n
Ta
s
k and S
i
milarityModel2D
commit
|
commitdiff
|
tree
2009-10-08
Steph
a
n Saalfe
l
d
lensc
o
rrection
stops n
o
w
la
t
er but latest aft
e
r the
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Step
h
an Saalfeld
Merge
b
ranch 'master
'
of ssh
:
/
/
repo
.
or
.
cz/srv/
g
it
/
trakem2
commit
|
commitdiff
|
tree
2009-10-07
Step
h
an
Saalfeld
Merge branch 'master' of
s
sh://repo
.
or
.
cz/srv/git/trak
e
m2
commit
|
commitdiff
|
tree
2009-10-07
Step
h
an S
a
alfeld
Fix 0
.
5grey backg
r
ound
for By
t
ePr
o
cessors in
commit
|
commitdiff
|
tree
2009-09-24
S
teph
a
n Saalfeld
Merge branch
'm
a
s
t
er
'
of ssh://
r
epo
.
or
.
c
z
/sr
v
/git/trakem2
commit
|
commitdiff
|
tree
2009-09-23
Stephan
S
aalf
e
ld
Saving a lot of
R
AM in
visualizing the
lens d
i
stortio
n
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
S
tephan Saalfeld
Merge branch 'stack' into align
commit
|
commitdiff
|
tree
2009-09-17
Ste
p
h
an Saa
l
feld
H
o
pe
f
ully
f
ixed
t
he scaling in Stack
commit
|
commitdiff
|
tree
2009-09-17
St
e
ph
a
n Saalfeld
M
e
r
g
e branch 'stack' into a
l
ign
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalf
e
l
d
M
erg
e
branch 'sta
c
k' of ssh://repo
.
or
.
c
z/srv/git/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Step
h
an
Saalfeld
Me
r
ge br
a
n
ch 'stack' into align
commit
|
commitdiff
|
tree
2009-09-17
S
te
p
han Saalfeld
separa
t
ed the actual alignLaye
r
sLinearl
y
j
ob from the
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
S
t
ep
h
a
n Saa
l
f
e
ld
Loade
r
uses db_lock
commit
|
commitdiff
|
tree
2009-09-16
S
tephan
Saalfeld
Merge
b
ranch
'
align' of s
s
h://repo
.
o
r
.
c
z
/
srv/
g
it/t
r
akem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-16
Stephan Saalfeld
Fixed a bug that prevented the
m
ult
i
-la
y
er mos
a
ickin
g
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
Stephan Saa
l
feld
M
e
r
g
e b
r
anch 'stac
k
'
o
f ssh://repo
.
or
.
c
z/s
r
v
/
git/
t
rakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
Stephan Saalfeld
a very intermedia
t
e commit that in
t
errupts me at star
t
ing the
commit
|
commitdiff
|
tree
2009-09-11
S
tephan Saalfeld
decachi
n
g was
not successful---truin
g
another one
.
.
.
commit
|
commitdiff
|
tree
2009-09-11
Stephan Saa
l
fel
d
Decache proc
e
ssed pat
c
hes afte
r
application of the
C
T
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan S
a
a
l
feld
Merge branch
'
align'
of ssh://r
e
po
.
or
.
cz/srv/git/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
St
e
phan
Saalfeld
A
d
d
e
d a
deform option to the multi-layer-mosaic
method
.
commit
|
commitdiff
|
tree
2009-09-10
S
te
p
han Saalfeld
Added
a deform option to
t
he multi-
l
ayer
-
mosaic met
h
od
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan
Sa
a
l
f
eld
A
dded a conveni
e
nce
m
e
thod to export a
flat image fo
r
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan
Sa
a
lfeld
C
osmetics
(
remo
v
ed some
n
on-requir
e
d impo
r
ts and empty
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Steph
a
n Saalfeld
A a static met
h
od to get
the
b
ounding box of a
c
o
l
l
ection o
f
commit
|
commitdiff
|
tree
2009-09-02
Stephan
Saalfel
d
*
F
i
xed wrong blurring
commit
|
commitdiff
|
tree
2009-09-01
Stephan Saalfe
l
d
ictScale
was inverse---anyway---th
e
re a
r
e
r
e
mainin
g
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
Stephan Saalfe
l
d
Pseu
d
o-fix for locking issue
s
commit
|
commitdiff
|
tree
2009-09-01
S
teph
a
n Saalfeld
Created the fol
l
owing ARGB composite m
o
des for
t
wo
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
Stephan Saalfeld
R
e
moved the
broken AddRGBComposite and add
e
d
a
funct
i
onal
commit
|
commitdiff
|
tree
2009-08-31
Stephan Saalfeld
firs
t
attempt to create a
n
addin
g
Composit
e
Contex
t
commit
|
commitdiff
|
tree
2009-08-31
Ste
p
han Saa
l
feld
a
d
ded tab for
s
t
a
c
k
z-displayable
commit
|
commitdiff
|
tree
2009-08-31
Stephan Saalfeld
St
a
ck assu
r
es the correct smoothing for the s
c
ale i
n
troduced
.
.
.
commit
|
commitdiff
|
tree
2009-08-31
Stephan S
a
alfeld
AffineT
r
an
s
fo
r
mMode notifies all affected Displ
a
yables
.
.
.
commit
|
commitdiff
|
tree
2009-08-31
Stephan Saalfeld
* Fixe
d
b
ounding box estimation
commit
|
commitdiff
|
tree
2009-08-30
Stephan
Saalfeld
* removed non-required methods from patch
commit
|
commitdiff
|
tree
2009-08-30
Step
h
a
n
Saa
l
f
el
d
cons
i
stently implemented inv
e
rtible coordinatetr
a
n
sf
o
rms
.
.
.
commit
|
commitdiff
|
tree
2009-08-30
Stephan Saalfeld
A
d
ded Invertibl
e
Coo
r
dinateTransformLis
t
commit
|
commitdiff
|
tree
2009-08-30
Stephan Saalfeld
I
n
ve
r
tibleCo
o
rdinateTransfo
r
m imp
l
ements CoordinateT
r
an
s
form
.
.
.
commit
|
commitdiff
|
tree
2009-08-30
S
tep
h
an Saalfeld
proper type
Coo
r
dinate
T
ransformList
.
clone
(
)
commit
|
commitdiff
|
tree
2009-08-06
Stephan
S
aalfeld
Fix Bu
g
71
commit
|
commitdiff
|
tree
2009-07-06
Steph
a
n Saal
f
eld
M
erge bra
n
ch 'ma
s
t
er' of s
s
h
:
/
/saal
f
eld@repo
.
or
.
cz
.
.
.
commit
|
commitdiff
|
tree
2009-07-06
Stephan Saalfeld
M
er
g
e
b
ran
c
h
'
mast
e
r' into iterating-len
s
correction
commit
|
commitdiff
|
tree
2009-07-06
Ste
p
han Saalfeld
Fixed the ite
r
ation in
len
s
-
c
orrection such
t
hat the
.
.
.
commit
|
commitdiff
|
tree
2009-07-06
Ste
p
h
an Saalf
e
ld
Implemete
d
itera
t
ing lens-correction a
s
described
i
n
.
.
.
commit
|
commitdiff
|
tree
2009-07-06
S
t
ephan
S
aa
l
feld
TransformMeshMapping sets Interpolat
i
on
M
ethod
(t
r
acking
.
.
.
commit
|
commitdiff
|
tree
2009-06-29
Stephan
S
a
alfel
d
Me
r
g
e
b
ranch
'paintables'
commit
|
commitdiff
|
tree
2009-06-29
St
e
phan Saal
f
eld
D
is
t
ortionCorrectio
n
T
ask fin
a
lly does t
h
e all to all
commit
|
commitdiff
|
tree
2009-06-29
Ste
p
h
a
n
Saalfeld
AbstractA
f
fineTile2
D
can identif
y
t
h
e common
PointMatches
.
.
.
commit
|
commitdiff
|
tree
2009-06-29
Stephan Saalfeld
Fixed transformm
e
s
hmapp
i
ng
.
js test to confor
m
with
.
.
.
commit
|
commitdiff
|
tree
2009-06-26
Stephan Saalfeld
A
no
t
so impo
r
tant improveme
n
t
of how point
c
orrespond
e
n
ces
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
Stephan
S
aalfeld
Fixed accidentially inverted
a
ffine concatenation
.
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
Stepha
n
Saa
l
f
eld
Merge branch
'
p
ai
n
table
s
' of
ss
h
://saalfel
d
@repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
S
te
p
han Saalfeld
Apply in NonLinearTransfo
r
mMode works
.
It was tested
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
S
t
ephan Saalfeld
Fixed XML
p
a
r
sing
o
f
C
o
ordinateTransformLi
s
ts
.
They
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
Stephan
Saa
l
fe
l
d
Ad
d
ed TrakEM2 extension of Affine
M
odel2D
commit
|
commitdiff
|
tree
2009-06-25
Stephan Sa
a
lf
e
ld
Fixed s
e
v
er
a
l bugs in and e
x
tended MovingL
e
a
s
t
S
qua
r
es
T
r
ansform:
commit
|
commitdiff
|
tree
2009-06-25
Stephan Saalfeld
Patch
c
alculates the
m
emory to free for re
n
d
er
i
ng
a
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
Stephan S
a
a
lfeld
CoordinateTransf
o
rm
L
i
s
t
h
as a generic parame
t
e
r that
.
.
.
commit
|
commitdiff
|
tree
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