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ElasticAlign fixes:
2011-06-17
St
e
phan Saa
l
feld
E
lasticA
l
i
g
n fi
x
es:
commit
|
commitdiff
|
tree
2011-06-16
Stephan Saalfe
l
d
Me
r
ge branch 'master' into
e
lastic-align
commit
|
commitdiff
|
tree
2011-06-16
Stephan Saalfe
l
d
comment test rpint
commit
|
commitdiff
|
tree
2011-05-27
Stephan
S
a
a
lfe
l
d
started
w
ith Elastic
Align
m
en
t
, la
y
er alignm
e
nt
a
lrea
d
y
.
.
.
commit
|
commitdiff
|
tree
2010-11-29
S
t
ephan Saa
l
feld
Me
r
ge
br
a
nch
'
m
a
ster' into
m
picb
g
-
model-interface
commit
|
commitdiff
|
tree
2010-11-20
S
t
ephan S
a
a
l
feld
tr
a
cking
mpicbg model-interf
a
ce
commit
|
commitdiff
|
tree
2010-08-18
Stephan S
a
alfel
d
mpic
b
g
.
trakem2
.
transfor
m
.
Trans
f
ormMesh e
x
tr
a
po
l
ates
.
.
.
commit
|
commitdiff
|
tree
2010-08-16
S
t
ephan
S
aalfeld
Fixed bug 2
0
2
commit
|
commitdiff
|
tree
2010-08-16
Stepha
n
Saal
f
eld
*
add m
i
nimal absolute number of inliers as a
p
a
rame
t
er
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfeld
Merge branch
'
m
aster' into rej
e
ctconstantb
a
ckground
commit
|
commitdiff
|
tree
2010-08-16
Stephan
Saalfeld
Me
r
g
e
branc
h
'master' of ssh://r
e
po
.
or
.
cz/srv/git/trakem
2
commit
|
commitdiff
|
tree
2010-08-07
Ste
p
han
S
aalfe
l
d
Merge branc
h
'reject
c
onstant
b
a
c
kground'
o
f ssh://repo
.
.
.
commit
|
commitdiff
|
tree
2010-08-07
Stephan Saalfel
d
f
i
n
ding
c
onnected tiles m
o
ved into base class
commit
|
commitdiff
|
tree
2010-08-07
Stephan Saa
l
feld
use
outlier filter in optimizer
commit
|
commitdiff
|
tree
2010-08-07
S
t
ephan Saal
f
eld
fi
n
ding
c
onnected tiles moved
into base class
commit
|
commitdiff
|
tree
2010-08-06
S
tephan S
a
alfeld
M
e
r
ge
branch 'r
e
je
c
t
c
onstantbackground' of ssh://repo
.
.
.
commit
|
commitdiff
|
tree
2010-08-06
Stepha
n
Saalfel
d
Fix w
r
o
n
g parameter choice in AlignT
a
sk
commit
|
commitdiff
|
tree
2010-08-05
Stepha
n
Saalfeld
Merge
branch 'master'
int
o
r
ejectco
n
stantbackground
commit
|
commitdiff
|
tree
2010-08-05
S
t
e
phan Saal
f
eld
e
xtended verbosity of
t
he tile m
a
tching
commit
|
commitdiff
|
tree
2010-08-05
S
t
ep
h
a
n
S
aal
f
eld
Adde
d
a
f
i
lter to re
j
ect constant background patt
e
rn
s
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Stephan
S
aal
f
eld
Merge br
a
nch 'mas
t
er'
o
f ss
h
://r
e
po
.
or
.
cz/sr
v
/git/tr
a
kem2
commit
|
commitdiff
|
tree
2010-03-19
S
tephan Saalfeld
Recove
r
e
d
the most importatn of Ignaci
o
'
s previous
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saa
l
f
e
ld
Merg
e
b
ranch '
m
ast
e
r'
i
nto lens-mod
e
l
commit
|
commitdiff
|
tree
2010-03-19
S
t
ep
h
an Saalfeld
Cre
a
t
ed PolynomialModel2D, a wrapper
f
o
r Verena Kaynig's
commit
|
commitdiff
|
tree
2010-03-18
Stephan Saalfeld
Added th
e
max
i
m
a
l accep
t
ed factor to mean PointMat
c
h
.
.
.
commit
|
commitdiff
|
tree
2010-03-17
Stephan Saalfeld
Remove ma
t
c
hes wit
h
large
d
isplacement from the
c
onfig
u
ration
commit
|
commitdiff
|
tree
2010-02-23
S
te
p
han S
a
alfeld
fi
x
ed calibrati
o
n of sc
a
led snaps
h
ots when exp
o
rt
i
ng
.
.
.
commit
|
commitdiff
|
tree
2010-02-22
Stephan Saalf
e
ld
f
i
x
ed
c
alibr
a
tion
of scaled snapshots
commit
|
commitdiff
|
tree
2010-02-19
Stephan Saalfeld
AlignT
a
sk: when deforming,
t
iles
A
RE already
i
n
p
l
ace
commit
|
commitdiff
|
tree
2010-02-19
Stephan
S
aalfeld
Ali
g
nT
a
sk: Fixed miss
u
s
e
of
a
static variab
l
e
.
commit
|
commitdiff
|
tree
2010-02-19
Stephan Saalf
e
l
d
Remove
the nev
e
r us
e
d shake method f
r
om abstract Model
.
commit
|
commitdiff
|
tree
2010-02-10
Stephan Saalfeld
Fixed a
bug that made
t
he original
i
mage app
e
a
r
behind
commit
|
commitdiff
|
tree
2010-02-09
Ste
p
han S
a
alfeld
Synchroni
z
ed screenPatchRang
e
s
commit
|
commitdiff
|
tree
2010-02-09
S
t
e
phan S
a
alf
e
ld
m
i
nor cleanup in lenscor
r
ection
commit
|
commitdiff
|
tree
2010-02-09
Stephan Saalfeld
A
d
de
d
TransformMe
s
hMappingW
i
thMa
s
ks
f
o
r
m
or
e
e
fficient
.
.
.
commit
|
commitdiff
|
tree
2010-02-09
Stephan Sa
a
lfeld
NonLinearTransformMode c
a
n pro
p
aga
t
e the transformatio
n
.
.
.
commit
|
commitdiff
|
tree
2010-02-07
Stephan Saalfeld
For now, don't scale maxEpsilon
.
commit
|
commitdiff
|
tree
2010-02-07
Ste
p
han Sa
a
lfeld
A
l
i
gn
M
ulti-Laye
r
-Mosaic: Us
e
up to 2x ma
x
OctaveSize
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
S
t
ephan Saal
f
eld
Finish
e
d the deform operation t
o
c
o
nsider all graphs
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stepha
n
Saa
l
feld
F
i
x
e
d Float
.
MIN_VA
L
UE to F
l
oat
.
MAX_VALUE where it r
e
mained
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
S
t
ephan Saalfeld
alig
n
MultiLayerMosaic fin
a
lly
u
ses g
r
aph-
b
ased pr
e
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
S
tephan Saal
f
e
ld
chan
g
ed defau
l
t value of SIFT
.
ma
x
OctaveSize = 600
commit
|
commitdiff
|
tree
2010-01-29
Stephan
S
a
alfeld
fixed pairOver
l
ap
p
in
g
Tiles( List, List, List[] )
commit
|
commitdiff
|
tree
2010-01-28
Stephan
S
aal
f
eld
adde
d
correspondence weight as a
pa
r
ameter to
A
lign
.
.
.
commit
|
commitdiff
|
tree
2009-11-05
Stepha
n
Saalfeld
Mer
g
e
br
a
nch 'master' into bun
w
arpj
commit
|
commitdiff
|
tree
2009-11-04
Stepha
n
S
a
alfeld
Me
r
ge
b
r
a
nch
'ma
s
ter'
i
nto bunwarpj
commit
|
commitdiff
|
tree
2009-11-03
S
t
ephan Saal
f
eld
Fixed CompositeModes
t
o
work in the follo
w
ing
c
o
nfiguration
s
commit
|
commitdiff
|
tree
2009-11-03
Stephan Sa
a
lfe
l
d
Revert "Wor
k
around annoying
b
ug in Graphics
2
D, in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
Steph
a
n Saalfeld
Fixed CompositeMod
e
s to w
o
rk in
t
h
e fo
l
lowing
c
onfigurations
commit
|
commitdiff
|
tree
2009-11-03
St
e
phan Saa
l
feld
Separatin
g
A
l
ignLaye
r
s
Task from Alig
n
Task
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
Reve
r
t "Work around annoying bug in Graph
i
c
s2D, in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
Stepha
n
Sa
a
l
fe
l
d
Me
r
ge branch 'mas
t
er' into c
o
mposite-modes
commit
|
commitdiff
|
tree
2009-11-03
Stepha
n
Saalfeld
AddAR
G
BCo
m
posite can handle i
m
age with
no alpha
.
commit
|
commitdiff
|
tree
2009-11-03
St
e
phan Saalfel
d
A
d
ded a comment in Align
commit
|
commitdiff
|
tree
2009-10-14
S
t
ephan
S
aalfeld
refactored a misn
a
med method
a
nd stat
i
fied s
o
me
p
a
r
ameters in
commit
|
commitdiff
|
tree
2009-10-14
Ste
p
han Saa
l
feld
syn
c
hronize
d
potentially concurrency unsafe mat
c
h insertion
.
.
.
commit
|
commitdiff
|
tree
2009-10-13
St
e
phan Saal
f
eld
Fi
x
ed the geometry issues and add
e
d
support for a
l
l
.
.
.
commit
|
commitdiff
|
tree
2009-10-09
Step
h
an
S
aalf
e
ld
Cat
c
hing
a
nd ha
n
dling OutOfMemoryEr
r
ors in Feat
u
reExtrac
t
ion
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Stephan Saalfeld
Cos
m
etics in AlignTask and SimilarityModel2D
commit
|
commitdiff
|
tree
2009-10-08
Stephan
Saalfel
d
lensco
r
rection
stops now later but lat
e
st after th
e
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
St
e
phan Saal
f
eld
Mer
g
e
b
ranch 'maste
r
' of ssh://r
e
po
.
or
.
cz/srv/g
i
t/trak
e
m
2
commit
|
commitdiff
|
tree
2009-10-07
St
e
p
h
a
n Saalfe
l
d
Mer
g
e branch '
m
a
ster
'
o
f ssh:
/
/repo
.
or
.
cz
/
srv
/
git/trakem2
commit
|
commitdiff
|
tree
2009-10-07
Stephan Saalfeld
Fix
0
.
5
g
r
e
y background for
B
y
t
e
P
r
ocess
o
rs in
commit
|
commitdiff
|
tree
2009-09-24
Stephan Saal
f
e
ld
Merge branch
'
master'
o
f
ssh://repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2009-09-23
Stephan Saalfeld
Saving a lot of RAM
in
visualizing the l
e
ns dis
t
ortio
n
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Stephan S
a
alfeld
Mer
g
e b
r
a
n
ch 'stack' into a
l
ign
commit
|
commitdiff
|
tree
2009-09-17
Step
h
an S
a
alf
e
l
d
H
o
peful
l
y
fixed the scaling in S
t
a
ck
commit
|
commitdiff
|
tree
2009-09-17
Stephan
S
aalfeld
Merge branch 's
t
ack'
i
n
t
o align
commit
|
commitdiff
|
tree
2009-09-17
S
t
e
phan S
a
a
lfeld
Merge branch 'stack' of ssh:/
/
r
epo
.
or
.
c
z
/
srv/git/tr
a
k
e
m2
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
St
e
phan Sa
a
lfeld
Merge branch '
s
tack' int
o
align
commit
|
commitdiff
|
tree
2009-09-17
S
t
e
ph
a
n
S
aalfeld
separa
t
ed th
e
ac
t
ual alignLayersLin
e
arly job from the
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalfe
l
d
Lo
a
der uses
d
b_lock
commit
|
commitdiff
|
tree
2009-09-16
S
tep
h
an S
a
alfeld
Merg
e
branch 'align' of ssh://repo
.
o
r
.
cz/srv/
g
it/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-16
St
e
phan
S
a
a
lfeld
Fixed a bug that prev
e
nted the multi-la
y
er mosaicking
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
Stephan Saalfeld
M
e
r
g
e
branch 'stack' of ssh://repo
.
or
.
cz/srv
/
git/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
Stephan Saalfeld
a very
i
ntermedi
a
t
e commit that inte
r
r
u
pts me at s
t
arting the
commit
|
commitdiff
|
tree
2009-09-11
Stepha
n
S
a
alfeld
decaching was n
o
t successf
u
l---tru
i
ng another o
n
e
.
.
.
commit
|
commitdiff
|
tree
2009-09-11
Stephan Saalfeld
D
e
cache processed
p
atches a
f
ter appl
i
cation of the CT
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan S
a
alfeld
Merge branch 'al
i
gn' of ss
h
:
//repo
.
or
.
cz/srv/
g
i
t/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan
Saalfeld
Added a de
f
o
r
m op
t
ion to the multi-
l
ayer-
m
osaic method
.
commit
|
commitdiff
|
tree
2009-09-10
S
tephan Saalfeld
Added a deform option
to the
m
ult
i
-layer-
m
o
s
aic method
.
commit
|
commitdiff
|
tree
2009-09-10
S
tephan Saal
f
eld
A
dded a convenience
method to export a f
l
at image for
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Steph
a
n Saalfel
d
Cosmet
i
cs (removed
s
ome no
n
-
required
imports and empty
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan Saalfeld
A
a static m
e
thod to get
t
he boun
d
i
n
g box of a
c
ollection of
commit
|
commitdiff
|
tree
2009-09-02
Ste
p
han Saalfel
d
*
F
ixed wron
g
blurring
commit
|
commitdiff
|
tree
2009-09-01
Step
h
a
n Saalf
e
ld
i
c
t
S
cale was inverse--
-
anywa
y
-
--there are
re
m
a
i
ning
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
Stephan Sa
a
lfeld
P
s
eudo-fix f
o
r locking issues
commit
|
commitdiff
|
tree
2009-09-01
Stephan
Saalfeld
Created
the following ARGB
c
omposite mode
s
f
o
r
two
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
Stephan Sa
a
lfeld
Removed the broken A
d
d
RGBComposite and
a
d
d
ed a function
a
l
commit
|
commitdiff
|
tree
2009-08-31
Ste
p
han
Saalfeld
fir
s
t att
e
mpt to crea
t
e an adding Composi
t
eContext
commit
|
commitdiff
|
tree
2009-08-31
S
tep
h
an Saa
l
feld
a
dd
e
d
t
a
b for
s
tack z-di
s
play
a
ble
commit
|
commitdiff
|
tree
2009-08-31
Stephan Saal
f
eld
Stack assures the correct smoot
h
ing
f
or the sc
a
l
e intr
o
duc
e
d
.
.
.
commit
|
commitdiff
|
tree
2009-08-31
S
t
e
phan Saalf
e
l
d
AffineTransform
M
ode notifies
all affec
t
ed
Di
s
playab
l
es
.
.
.
commit
|
commitdiff
|
tree
2009-08-31
Stephan Sa
a
lfeld
*
F
ixed bounding box estimation
commit
|
commitdiff
|
tree
2009-08-30
Step
h
an Saa
l
feld
* re
m
oved non-required methods fro
m
p
atch
commit
|
commitdiff
|
tree
2009-08-30
Stephan Saalfeld
c
onsistent
l
y i
m
plement
e
d inv
e
rtible coo
r
dinatetransforms
.
.
.
commit
|
commitdiff
|
tree
2009-08-30
Step
h
an Saalf
e
ld
Added
I
nv
e
rtibleCoordinateTransformLi
s
t
commit
|
commitdiff
|
tree
2009-08-30
St
e
pha
n
Saalfeld
Inver
t
ibleCoord
i
nateTr
a
nsform impl
e
men
t
s
C
oordinateTransfo
r
m
.
.
.
commit
|
commitdiff
|
tree
2009-08-30
S
t
epha
n
Saalfe
l
d
proper typ
e
C
o
or
d
in
a
teTransformLi
s
t
.
clone()
commit
|
commitdiff
|
tree
2009-08-06
Step
h
an Saalfeld
Fix Bug 71
commit
|
commitdiff
|
tree
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