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ElasticAlign fixes:
2011-06-17
St
e
phan Saalf
e
l
d
Elast
i
cAlign fix
e
s:
commit
|
commitdiff
|
tree
2011-06-16
Ste
p
han Saalfeld
Merge bran
c
h
'master'
i
nto elastic-align
commit
|
commitdiff
|
tree
2011-06-16
Steph
a
n Saalfeld
comment test rpin
t
commit
|
commitdiff
|
tree
2011-05-27
Stephan Saalfeld
s
t
art
e
d with
El
a
stic
Alignment, layer a
l
ignment
alr
e
a
dy
.
.
.
commit
|
commitdiff
|
tree
2010-11-29
Stephan Saalfeld
Merge branch 'master' into mpicbg-model-interfac
e
commit
|
commitdiff
|
tree
2010-11-20
S
t
ephan Saa
l
fel
d
trackin
g
mpicbg
m
o
de
l
-in
t
erface
commit
|
commitdiff
|
tree
2010-08-18
S
tephan S
a
alfeld
mpicbg
.
trake
m
2
.
t
r
ansform
.
Tra
n
sformMesh extrapolates
.
.
.
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfeld
Fixed
b
ug 20
2
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfeld
*
add minima
l
absolute number of
inliers as
a
p
a
rameter
commit
|
commitdiff
|
tree
2010-08-16
Stephan
S
aal
f
eld
Merge branch 'master' into rej
e
ctco
n
stantbac
k
g
r
ound
commit
|
commitdiff
|
tree
2010-08-16
S
t
ephan Sa
a
lf
e
l
d
Me
r
ge branch 'ma
s
ter'
of ssh://r
e
p
o
.
or
.
cz/srv/gi
t
/trak
e
m2
commit
|
commitdiff
|
tree
2010-08-07
Stephan Sa
a
lfeld
Me
r
ge b
r
an
c
h
'
rejectco
n
st
a
n
t
bac
k
g
round' o
f
ss
h
://repo
.
.
.
commit
|
commitdiff
|
tree
2010-08-07
Ste
p
han Saal
f
eld
finding conne
c
t
e
d
t
iles moved
into base class
commit
|
commitdiff
|
tree
2010-08-07
Stepha
n
Saalfe
l
d
use
o
utlier
filter in
o
p
t
imizer
commit
|
commitdiff
|
tree
2010-08-07
Stephan Saalfe
l
d
fin
d
ing
c
o
n
nected tiles moved
i
nto base cla
s
s
commit
|
commitdiff
|
tree
2010-08-06
St
e
phan Saalfeld
M
e
rge
b
ranch 'rejectconstantbackground' of ssh://repo
.
.
.
commit
|
commitdiff
|
tree
2010-08-06
S
t
ephan Sa
a
lfeld
Fix w
r
ong parameter
c
hoice in Al
i
gnTask
commit
|
commitdiff
|
tree
2010-08-05
Stephan Saa
l
feld
M
e
rge
b
ranch
'
master' into rejectconstantbackg
r
ound
commit
|
commitdiff
|
tree
2010-08-05
Step
h
an Saalfeld
extended verbosity of the ti
l
e mat
c
h
i
ng
commit
|
commitdiff
|
tree
2010-08-05
Stephan
S
aal
f
eld
A
dded a fil
t
er
to
r
e
ject constant b
a
ckgr
o
u
n
d patterns
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saalfeld
Merge branch 'master' of ssh://repo
.
or
.
cz/srv/git
/
trakem2
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saalfeld
Recover
e
d the
m
ost importatn
o
f
I
gn
a
cio's previous
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Steph
a
n Saalfeld
Merge b
r
anch 'master'
i
nto
l
en
s
-mode
l
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saalfe
l
d
Cr
e
ated PolynomialMode
l
2D, a wrapper fo
r
Vere
n
a
Kaynig's
commit
|
commitdiff
|
tree
2010-03-18
Stephan S
a
alfeld
Added the maxi
m
al acce
p
ted factor to
mean P
o
intMatch
.
.
.
commit
|
commitdiff
|
tree
2010-03-17
S
tephan Saalfeld
Remove
matches with larg
e
displacement from t
h
e
configur
a
tion
commit
|
commitdiff
|
tree
2010-02-23
Step
h
an Saalfeld
f
i
xed calibration
of
scaled snapsho
t
s whe
n
export
i
ng
.
.
.
commit
|
commitdiff
|
tree
2010-02-22
Stephan Saalf
e
ld
f
i
xed calibration
of scaled snapshots
commit
|
commitdiff
|
tree
2010-02-19
Stephan
Saalfeld
A
l
ignT
a
sk: wh
e
n deforming, tiles ARE already in p
l
ace
commit
|
commitdiff
|
tree
2010-02-19
Stephan Saalfe
l
d
AlignTask
:
Fixed
mi
s
suse o
f
a stati
c
variable
.
commit
|
commitdiff
|
tree
2010-02-19
Steph
a
n
Saa
l
fe
l
d
R
emove th
e
never used sha
k
e method from abstract Model
.
commit
|
commitdiff
|
tree
2010-02-10
Ste
p
han Saalfeld
Fix
e
d a
b
ug that made the
o
r
iginal
image appear b
e
hi
n
d
commit
|
commitdiff
|
tree
2010-02-09
Stephan Saalfeld
Syn
c
hroniz
e
d scre
e
nPatchR
a
n
g
es
commit
|
commitdiff
|
tree
2010-02-09
Stephan Saal
f
eld
minor c
l
e
a
nup in lens
c
orr
e
ction
commit
|
commitdiff
|
tree
2010-02-09
S
tepha
n
Saal
f
eld
Added Tr
a
n
sformMeshMapp
i
ngWit
h
Masks for more efficient
.
.
.
commit
|
commitdiff
|
tree
2010-02-09
S
tephan
S
aalfeld
NonLinearT
r
a
nsfo
r
mMo
d
e can
p
r
o
pagate t
h
e transformation
.
.
.
commit
|
commitdiff
|
tree
2010-02-07
St
e
p
h
an Saalfeld
For
now, don't scale maxEpsilon
.
commit
|
commitdiff
|
tree
2010-02-07
S
t
ephan Saalfeld
Align Multi-La
y
er-Mosaic: Use up to 2
x
maxOctaveSize
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Step
h
an Saal
f
eld
Finished the deform operation to consider al
l
graphs
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Ste
p
han
S
aalfeld
Fixed Float
.
MIN_VALUE to F
l
o
a
t
.
MAX_VA
L
UE w
h
ere it rema
i
ne
d
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan Saalfeld
alig
n
MultiLayerMosai
c
final
l
y us
e
s graph-based pre
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Step
h
an Saalf
e
ld
cha
n
ged de
f
a
u
l
t
v
alue o
f
SI
F
T
.
max
O
ctaveSize
=
600
commit
|
commitdiff
|
tree
2010-01-29
Stephan Saalfeld
f
ixed pa
i
r
O
verlappi
n
gTiles
(
List,
L
ist
,
List[] )
commit
|
commitdiff
|
tree
2010-01-28
St
e
phan Saalfel
d
ad
d
ed c
o
rr
e
s
p
on
d
ence weight as
a
parameter to Al
i
gn
.
.
.
commit
|
commitdiff
|
tree
2009-11-17
S
tephan Saalfe
l
d
M
erge bran
c
h 'm
a
st
e
r' into bu
n
warpj
commit
|
commitdiff
|
tree
2009-11-05
Stephan S
a
a
l
f
eld
Merge branch '
m
aster' into bu
n
warpj
commit
|
commitdiff
|
tree
2009-11-04
Ste
p
han Saalfe
l
d
M
e
rge branch 'master' into bunwarpj
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfe
l
d
Fixed
CompositeModes to wor
k
i
n the follo
w
ing configura
t
ions
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
Revert "
W
ork around annoying bug in Graphics2D, in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan
Saalfeld
Fixed Composi
t
eModes
to work in the following configurations
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saa
l
feld
Separating Alig
n
LayersTask from AlignT
a
sk
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan
S
aa
l
feld
Revert "Work around a
n
noying bug
i
n Graphics2D, in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
Stepha
n
Saalfeld
Merge
b
r
a
nch
'
mast
e
r
'
into composite-
m
ode
s
commit
|
commitdiff
|
tree
2009-11-03
Step
h
an Saalfeld
AddARGBComposite can handle image with no alpha
.
commit
|
commitdiff
|
tree
2009-11-03
S
t
ephan Saalf
e
l
d
Added a comment in Ali
g
n
commit
|
commitdiff
|
tree
2009-10-14
St
e
phan
Sa
a
lfeld
r
efacto
r
ed a
m
i
sname
d
m
ethod and statifi
e
d so
m
e pa
r
ameters in
commit
|
commitdiff
|
tree
2009-10-14
Steph
a
n Sa
a
lfe
l
d
synchronized p
o
t
entially concurrency u
n
s
a
fe match insertion
.
.
.
commit
|
commitdiff
|
tree
2009-10-13
Steph
a
n Saalfeld
F
ixed
t
he geometry i
s
sues and
added suppor
t
for all
.
.
.
commit
|
commitdiff
|
tree
2009-10-09
Stephan Saalfeld
Catching
a
nd handling OutOfMemoryErrors in FeatureExtracti
o
n
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Stepha
n
Saalfeld
Cosme
t
ic
s
in
Align
T
ask and
S
i
milarityModel2D
commit
|
commitdiff
|
tree
2009-10-08
Stephan Saalfeld
lenscorrection stops
no
w
l
ater
but late
s
t afte
r
the
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Stephan
Saalfe
l
d
Merge branch 'mast
e
r' o
f
ssh
:
/
/
r
e
po
.
or
.
c
z
/srv/git/tr
a
kem2
commit
|
commitdiff
|
tree
2009-10-07
S
tep
h
an Saalfeld
Me
r
ge bra
n
ch 'master' of ssh://
r
e
p
o
.
or
.
c
z/srv
/
gi
t
/
t
rakem2
commit
|
commitdiff
|
tree
2009-10-07
Stephan Saalfeld
Fix 0
.
5g
r
ey
b
ack
g
round for ByteProcess
o
rs
i
n
commit
|
commitdiff
|
tree
2009-09-24
Stephan Saal
f
eld
Merge b
r
anc
h
'master' of ssh:
/
/repo
.
o
r
.
cz/srv/gi
t
/
trak
e
m2
commit
|
commitdiff
|
tree
2009-09-23
Step
h
an Saalfeld
Saving a lot o
f
RAM
i
n v
i
su
a
l
i
z
ing
the lens
d
i
sto
r
t
ion
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalfeld
Merge
branc
h
'stack' into align
commit
|
commitdiff
|
tree
2009-09-17
S
t
ephan Saalfeld
Hopefu
l
ly fixed the sca
l
ing in Stack
commit
|
commitdiff
|
tree
2009-09-17
S
t
ephan
Saal
f
eld
M
e
rge branch 'stack' into
align
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalfeld
Me
r
g
e
branch 'stack' of ssh://repo
.
or
.
cz/srv/gi
t
/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalfe
l
d
Merg
e
bra
n
ch 'stack' into align
commit
|
commitdiff
|
tree
2009-09-17
St
e
p
ha
n
Saalfeld
separated the actual alignLayersLinearly job from the
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
S
t
ephan Sa
a
l
feld
Loader uses d
b
_lock
commit
|
commitdiff
|
tree
2009-09-16
Stephan Saalfel
d
Merge
b
ra
n
ch '
a
lign'
of ssh://repo
.
or
.
cz/srv
/
g
it/trake
m
2
.
.
.
commit
|
commitdiff
|
tree
2009-09-16
St
e
p
han Sa
a
l
feld
Fixed a bu
g
that
p
revented the multi-
l
ayer mosaicking
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
Step
h
a
n
S
aal
f
eld
M
erge branch 'stac
k
' of ssh://repo
.
or
.
cz/s
r
v/g
i
t/t
r
ake
m
2
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
Stephan
Saalfeld
a very inte
r
me
d
iate commit that inter
r
upts me at st
a
rting the
commit
|
commitdiff
|
tree
2009-09-11
S
tephan Saa
l
feld
decachin
g
was not successful---
t
ruing another one
.
.
.
commit
|
commitdiff
|
tree
2009-09-11
Ste
p
han Saalf
e
ld
D
ecach
e
p
r
ocessed
patc
h
es a
f
ter ap
p
lication of the CT
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan Sa
a
lfeld
Merge branch 'align'
o
f ssh:
/
/
repo
.
or
.
cz
/
s
rv/gi
t
/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Steph
a
n Saalfeld
A
d
ded a deform
o
p
tion
t
o
the multi-layer-mos
a
ic method
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan Saa
l
feld
Added a deform opti
o
n to th
e
m
u
lti-layer-mosaic method
.
commit
|
commitdiff
|
tree
2009-09-10
S
t
ephan Saalfeld
Added a convenience meth
o
d t
o
expor
t
a flat image
for
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan Saalfe
l
d
Cosmetics
(removed some non-requ
i
red im
p
o
rts and emp
t
y
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
S
t
ephan Saalfeld
A a
s
tatic m
e
th
o
d
to get th
e
bounding
box of a collecti
o
n
of
commit
|
commitdiff
|
tree
2009-09-02
Stephan Saalfeld
* Fi
x
ed wro
n
g
blurring
commit
|
commitdiff
|
tree
2009-09-01
Ste
p
han Saalfeld
ictScale was inver
s
e--
-
a
nyway---there a
r
e remaining
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
Stephan Saalfel
d
Pseudo-
f
ix
f
or locking issues
commit
|
commitdiff
|
tree
2009-09-01
S
t
e
phan
S
aalf
e
ld
Cr
e
ated
t
h
e
following ARGB composite
m
odes for two
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
Stephan Sa
a
lfeld
Remo
v
ed the b
r
oken AddRGBComposite
a
nd added a functiona
l
commit
|
commitdiff
|
tree
2009-08-31
Stephan S
a
alfeld
f
irst attempt to create
a
n add
i
ng CompositeContext
commit
|
commitdiff
|
tree
2009-08-31
Stephan Saalfe
l
d
a
dded t
a
b
f
or stack z-displayable
commit
|
commitdiff
|
tree
2009-08-31
Stephan
Saalfeld
Stack assure
s
the correct smoothing for
t
he scale
i
ntroduced
.
.
.
commit
|
commitdiff
|
tree
2009-08-31
Stephan Saalfe
l
d
AffineT
r
ansformMode notifies all affec
t
ed
D
isplayables
.
.
.
commit
|
commitdiff
|
tree
2009-08-31
Ste
p
h
a
n Saa
l
f
eld
* Fixed bou
n
ding
b
ox estimation
commit
|
commitdiff
|
tree
2009-08-30
Stephan S
a
alfeld
* removed non-required methods from patch
commit
|
commitdiff
|
tree
2009-08-30
Steph
a
n S
a
alfeld
consisten
t
ly impl
e
mented
i
nvertible coordinatetransfo
r
m
s
.
.
.
commit
|
commitdiff
|
tree
2009-08-30
Stephan Saalfeld
Added
I
nvertibleCo
o
rdin
a
teTransform
L
i
s
t
commit
|
commitdiff
|
tree
2009-08-30
Stephan
S
a
alf
e
ld
InvertibleCoordinateTran
s
form implements Coordinat
e
Transf
o
r
m
.
.
.
commit
|
commitdiff
|
tree
2009-08-30
Ste
p
han Saalfeld
pro
p
er t
y
pe CoordinateTransformList
.
c
lone()
commit
|
commitdiff
|
tree
next