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finding connected tiles moved into base class
2010-08-07
Stephan Saalfeld
finding connec
t
ed
t
iles
m
oved
i
nto
b
ase cla
s
s
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saalf
e
ld
Merge branch
'm
a
ster' of ssh://r
e
po
.
or
.
cz/
s
rv/
g
it/trakem2
commit
|
commitdiff
|
tree
2010-03-19
S
t
ephan Saalf
e
ld
Recov
e
red
t
he most impor
t
a
t
n
o
f
I
gnacio's previous
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Stephan Sa
a
lfeld
Me
r
ge
b
ranch
'master' into lens-model
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saalfeld
C
r
eate
d
Polynomia
l
M
o
del2D, a wra
p
p
er f
o
r
V
e
rena Kayni
g
's
commit
|
commitdiff
|
tree
2010-03-18
S
te
p
han
S
a
alfeld
A
dded the maxim
a
l accepted fac
t
or to mean PointMatch
.
.
.
commit
|
commitdiff
|
tree
2010-03-17
St
e
phan Saalfeld
Remo
v
e matches with large dis
p
lacement
from
t
h
e
config
u
ration
commit
|
commitdiff
|
tree
2010-02-23
St
e
phan Saalf
e
ld
fixed calibration
of
scaled snapshots when exporting
.
.
.
commit
|
commitdiff
|
tree
2010-02-22
Stephan Saal
f
eld
fixed cali
b
ration of scal
e
d
snapsho
t
s
commit
|
commitdiff
|
tree
2010-02-19
Stepha
n
Saalfeld
Al
i
g
n
Task:
w
h
e
n de
f
orming, tiles ARE alre
a
d
y
in
p
lace
commit
|
commitdiff
|
tree
2010-02-19
Stephan Saalfeld
Al
i
gnTask: Fixed
m
issuse
of
a static variable
.
commit
|
commitdiff
|
tree
2010-02-19
Stephan Saa
l
feld
Remove t
h
e never used sh
a
ke method
f
rom abst
r
act
M
odel
.
commit
|
commitdiff
|
tree
2010-02-10
Stephan Saalfeld
Fixed a bug
that made the original image
a
ppear behind
commit
|
commitdiff
|
tree
2010-02-09
Stephan
Saalfeld
S
ync
h
r
oni
z
ed screenPat
c
hRanges
commit
|
commitdiff
|
tree
2010-02-09
St
e
p
h
a
n
Saalfeld
min
o
r clean
u
p
i
n
l
enscorrecti
o
n
commit
|
commitdiff
|
tree
2010-02-09
Stephan
S
aalfeld
Added Tra
n
sfo
r
mMeshMappingWithMasks for
m
or
e
efficient
.
.
.
commit
|
commitdiff
|
tree
2010-02-09
Stepha
n
Sa
a
lfel
d
N
onLinearTr
a
n
sformMode can
propag
a
te
the transformation
.
.
.
commit
|
commitdiff
|
tree
2010-02-07
Stephan
Saalfeld
F
or
now, d
o
n
'
t s
c
a
le maxEpsilon
.
commit
|
commitdiff
|
tree
2010-02-07
Stephan Saalfeld
Align Multi-Layer-Mosaic: Use up to
2
x ma
x
O
c
taveSize
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
St
e
phan Saalfel
d
F
i
nished
the defor
m
o
p
eration
to consider all
graphs
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
S
tephan
Saalfel
d
Fixe
d
Flo
a
t
.
MIN_VALUE
t
o Float
.
MAX_VALUE where it remained
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
St
e
phan Saalfeld
alignMulti
L
ay
e
rMosaic finally uses graph-based pre
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan Saalfeld
changed def
a
ult value of
SIFT
.
maxO
c
ta
v
eS
i
ze
=
600
commit
|
commitdiff
|
tree
2010-01-29
S
t
eph
a
n Saal
f
el
d
f
ixe
d
p
a
irOverlappi
n
gTiles( List, List, Lis
t
[] )
commit
|
commitdiff
|
tree
2010-01-28
St
e
p
h
an Saalfeld
added co
r
respondenc
e
weight as
a
parameter to Al
i
g
n
.
.
.
commit
|
commitdiff
|
tree
2009-11-05
Stephan Saalfeld
Merg
e
branch
'
m
aste
r
' i
n
to bunwarpj
commit
|
commitdiff
|
tree
2009-11-04
Steph
a
n
Saalf
e
ld
Merge branch 'master'
into bunwarpj
commit
|
commitdiff
|
tree
2009-11-03
S
te
p
ha
n
Saalfeld
Fixed
Co
m
positeModes
to
work in
the following
c
onfigura
t
ions
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
Revert
"Work
a
round
annoying bug in Graphics2D
,
i
n
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
Fixed Compo
s
iteModes
t
o work in the followin
g
configurations
commit
|
commitdiff
|
tree
2009-11-03
S
tephan Saalfeld
Separ
a
t
i
ng AlignLa
y
ers
T
ask f
r
om
A
lignTask
.
commit
|
commitdiff
|
tree
2009-11-03
S
tephan Saalfel
d
Re
v
ert "Work aro
u
nd a
n
noying
b
u
g
i
n Gra
p
h
i
cs2D, in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfe
l
d
Merge
branch 'master' i
n
to composite
-
modes
commit
|
commitdiff
|
tree
2009-11-03
St
e
phan Saalf
e
l
d
AddARGBCo
m
posite
c
an handle image with
n
o alpha
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
Added a comment in A
l
ign
commit
|
commitdiff
|
tree
2009-10-14
Stephan Sa
a
lf
e
l
d
r
e
factored a misnamed method and statified so
m
e pa
r
ameter
s
in
commit
|
commitdiff
|
tree
2009-10-14
Ste
p
han S
a
alfeld
s
yn
c
h
ronized potentially concurrenc
y
u
n
safe
match insertion
.
.
.
commit
|
commitdiff
|
tree
2009-10-13
St
e
phan Saalfe
l
d
F
ixe
d
the
geometry
i
ssues and added support
f
or all
.
.
.
commit
|
commitdiff
|
tree
2009-10-09
Stepha
n
Saa
l
feld
Cat
c
hing and ha
n
dling OutOfMemoryErrors in
FeatureExtrac
t
ion
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Stephan
Saal
f
eld
Co
s
metics in
AlignTask and Sim
i
larityMode
l
2D
commit
|
commitdiff
|
tree
2009-10-08
Step
h
a
n
Saal
f
eld
lenscorrection st
o
ps no
w
l
ater but latest after th
e
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
S
t
ephan Sa
a
lfeld
Merge
b
ranch 'mast
e
r' of ssh://repo
.
or
.
cz
/
srv/git
/
trakem2
commit
|
commitdiff
|
tree
2009-10-07
Steph
a
n Saalfeld
M
erge bra
n
ch 'master' of ssh://repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2009-10-07
S
t
ephan Saalfeld
F
i
x 0
.
5grey background f
o
r Byte
P
r
o
cessors
i
n
commit
|
commitdiff
|
tree
2009-09-24
Stephan Sa
a
lfeld
M
e
rge branch 'master
'
of ssh://repo
.
o
r
.
cz/srv/gi
t
/trakem2
commit
|
commitdiff
|
tree
2009-09-23
S
t
epha
n
Saalfeld
Saving a l
o
t of RAM in visualizing the lens di
s
tortion
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Stephan
S
a
a
lfeld
Merge bra
n
ch
'stack' into align
commit
|
commitdiff
|
tree
2009-09-17
Ste
p
han Saalfeld
Hopefull
y
fix
e
d the scaling
in Stac
k
commit
|
commitdiff
|
tree
2009-09-17
Stephan
S
a
alfeld
Merge branch
'st
a
ck'
into align
commit
|
commitdiff
|
tree
2009-09-17
Step
h
a
n
Saalfeld
Merge bran
c
h 'stack' of ssh://repo
.
or
.
cz/srv/git/trak
e
m2
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
S
t
ephan Saalfeld
Merge
branch 'stack' into alig
n
commit
|
commitdiff
|
tree
2009-09-17
S
t
ephan Saalfeld
separated the actual alignLayersLin
e
arly j
o
b
from the
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalfeld
Loader uses db_
l
o
c
k
commit
|
commitdiff
|
tree
2009-09-16
Stephan
S
aalfeld
M
er
g
e branch
'
align' of ssh://rep
o
.
or
.
cz
/
srv/git/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-16
Ste
p
han Saa
l
feld
Fixed a bug
tha
t
pr
e
v
e
nted the
m
ulti-laye
r
mosaickin
g
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
Stephan Saal
f
eld
Merge branch 'stack'
of ssh://repo
.
o
r
.
cz/srv/git/t
r
akem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
Step
h
an Saalfeld
a very i
n
ter
m
ediate commit that interrupts me at starting th
e
commit
|
commitdiff
|
tree
2009-09-11
St
e
p
han S
a
a
l
feld
decaching was not successful
-
--tr
u
i
n
g anot
h
e
r one
.
.
.
commit
|
commitdiff
|
tree
2009-09-11
Stephan Saalfeld
Decache p
r
oc
e
ssed patches
a
fter ap
p
li
c
ation of the CT
.
commit
|
commitdiff
|
tree
2009-09-10
Steph
a
n Saalfeld
Merge branch 'align'
of ssh://repo
.
or
.
cz/srv/git/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan Saalfeld
Added a deform op
t
i
on
t
o
t
he
m
ulti-layer-mo
s
a
i
c
met
h
od
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan Saalfeld
A
d
ded a d
e
fo
r
m option to the multi-la
y
er
-
mosai
c
me
t
hod
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan S
a
alfel
d
Ad
d
ed a
c
onvenience method
t
o
export a
f
lat image for
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
St
e
phan Saalfel
d
Cosmetic
s
(removed som
e
no
n
-requir
e
d impor
t
s and empty
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
S
tephan Saalfeld
A a stati
c
method to
g
e
t
th
e
boundin
g
box of a col
l
ection
o
f
commit
|
commitdiff
|
tree
2009-09-02
S
t
e
ph
a
n Sa
a
lf
e
ld
* Fixed wrong blurring
commit
|
commitdiff
|
tree
2009-09-01
Stephan Saal
f
eld
ictS
c
ale wa
s
inv
e
rse--
-
an
y
wa
y
---the
r
e are
remaining
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
Stephan
Saalfeld
P
s
e
u
d
o-fix for locking issues
commit
|
commitdiff
|
tree
2009-09-01
S
t
ephan S
a
a
lfeld
Created the fo
l
lowing
ARGB composite mod
e
s for two
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
Stephan Saal
f
eld
Removed the
br
o
k
e
n
AddRG
B
Com
p
osite and ad
d
ed a
functiona
l
commit
|
commitdiff
|
tree
2009-08-31
St
e
phan Saalfeld
fir
s
t att
e
mpt to
c
reate an
adding
C
ompositeContext
commit
|
commitdiff
|
tree
2009-08-31
Stephan Saalfeld
ad
d
e
d
tab for
s
tack
z
-d
i
spl
a
yable
commit
|
commitdiff
|
tree
2009-08-31
St
e
p
h
an
Saal
f
e
l
d
Stack assur
e
s the correct smoo
t
hin
g
for the scale introduced
.
.
.
commit
|
commitdiff
|
tree
2009-08-31
Stepha
n
Saalfeld
AffineTr
a
n
s
form
M
o
de noti
f
ies all
a
f
f
ected Di
s
playables
.
.
.
commit
|
commitdiff
|
tree
2009-08-31
Stephan
S
aalfe
l
d
* Fixed bounding box estimation
commit
|
commitdiff
|
tree
2009-08-30
Stephan Saalfeld
*
r
emoved non-required metho
d
s from
p
atc
h
commit
|
commitdiff
|
tree
2009-08-30
Ste
p
ha
n
S
aalfeld
con
s
isten
t
l
y impleme
n
t
ed invertible coordinatetransfo
r
m
s
.
.
.
commit
|
commitdiff
|
tree
2009-08-30
Stephan Saalfeld
Adde
d
Inv
e
r
t
ibleCoordinateTrans
f
o
r
m
L
ist
commit
|
commitdiff
|
tree
2009-08-30
Stephan Saalfeld
InvertibleCo
o
rdinateTransform implements CoordinateT
r
ansform
.
.
.
commit
|
commitdiff
|
tree
2009-08-30
Stephan Saalfe
l
d
proper type CoordinateTransf
o
rmList
.
clon
e
()
commit
|
commitdiff
|
tree
2009-08-06
Steph
a
n Saalfeld
Fix Bug 71
commit
|
commitdiff
|
tree
2009-07-06
Stephan Saalfeld
Merge
branch 'mas
t
er' of ssh://saal
f
el
d
@rep
o
.
or
.
cz
.
.
.
commit
|
commitdiff
|
tree
2009-07-06
Stephan Saalfe
l
d
Merge branch 'master' into it
e
rating-lensc
o
rrection
commit
|
commitdiff
|
tree
2009-07-06
S
t
ephan Saalfe
l
d
Fixed
t
he itera
t
ion in lens-cor
r
e
ction such
t
hat the
.
.
.
commit
|
commitdiff
|
tree
2009-07-06
Steph
a
n Saalfeld
I
mplemete
d
iterating len
s
-correct
i
o
n
as described in
.
.
.
commit
|
commitdiff
|
tree
2009-07-06
Stephan
Saalfeld
TransformMeshMapping sets Inter
p
olationMet
h
od (tracking
.
.
.
commit
|
commitdiff
|
tree
2009-06-29
S
t
e
p
h
a
n
Saalfeld
Me
r
ge branch 'paint
a
bles'
commit
|
commitdiff
|
tree
2009-06-29
Stephan Saalfeld
DistortionCorrectionTask fin
a
lly
does
the all to al
l
commit
|
commitdiff
|
tree
2009-06-29
Ste
p
ha
n
Saalfeld
A
b
str
a
ctAffineTile2D can identify the common
Poi
n
tMatches
.
.
.
commit
|
commitdiff
|
tree
2009-06-29
St
e
p
han Saa
l
feld
Fixed transform
m
e
s
hma
p
ping
.
j
s
tes
t
to conform with
.
.
.
commit
|
commitdiff
|
tree
2009-06-26
S
t
ephan Saalfeld
A not
s
o
important impr
o
ve
m
ent of ho
w
point correspo
n
d
e
nces
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
Stepha
n
S
a
alfeld
F
ixed accidentially in
v
erted af
f
ine concatenation
.
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
Stephan
Saalfeld
Merge
branch 'paintables' of ssh://
s
aalfeld@repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
Ste
p
ha
n
Saalfeld
Apply in No
n
LinearTran
s
formMode
w
ork
s
.
It was tested
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
Stephan Saalfeld
Fixed XML p
a
r
s
i
n
g
o
f Coordinat
e
TransformLists
.
The
y
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
St
e
pha
n
Saalfel
d
Add
e
d TrakE
M
2 e
x
t
e
nsion of AffineModel2D
commit
|
commitdiff
|
tree
2009-06-25
Step
h
an Saalf
e
ld
Fi
x
e
d se
v
e
ral bugs in and extended MovingL
e
astS
q
uaresTra
n
sform:
commit
|
commitdiff
|
tree
2009-06-25
Stephan Saalfeld
Patch calc
u
l
a
tes
t
he memory to free for r
e
ndering a
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
S
te
p
h
an
S
aalf
e
ld
Coordinat
e
T
r
ans
f
ormList ha
s
a generic parameter t
h
at
.
.
.
commit
|
commitdiff
|
tree
2009-06-22
Stephan Saalf
e
ld
Merge branch
'pa
i
ntables' of
s
sh://saalfeld
@
r
ep
o
.
or
.
.
.
commit
|
commitdiff
|
tree
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