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flush image cache memory before doing a montage
2011-08-02
S
tephan Saalfeld
flush image
c
ache
m
e
m
ory
before
doin
g
a
m
ont
a
g
e
commit
|
commitdiff
|
tree
2011-06-29
Stepha
n
Saalfeld
ElasticMonta
g
e
:
commit
|
commitdiff
|
tree
2011-06-29
Stephan Saalfeld
Merg
e
b
r
anch 'ma
s
ter' into
e
l
a
s
t
ic-align
commit
|
commitdiff
|
tree
2011-06-28
S
tephan Saalfeld
M
erge br
a
nch 'm
a
ster' into elastic-align
commit
|
commitdiff
|
tree
2011-06-28
Steph
a
n Saalfeld
Added `seems
-
t
o-wo
r
k' elastic montaging
.
Miss
i
ng parts
a
re
commit
|
commitdiff
|
tree
2011-06-28
Stephan
S
aalfeld
* made Pat
c
h
.
PatchI
m
ag
e
a stati
c
c
l
as
s
(it has
no ref
e
rences
.
.
.
commit
|
commitdiff
|
tree
2011-06-24
Stephan Saalfeld
added Pair to
Abstract
commit
|
commitdiff
|
tree
2011-06-23
St
e
phan Saalfel
d
Alig
n
.
java: moved twice im
p
lemented Model f
i
tting and
.
.
.
commit
|
commitdiff
|
tree
2011-06-23
Steph
a
n Saalfeld
Elasti
c
Ali
g
n uses the local siftParam for ide
n
tifying
commit
|
commitdiff
|
tree
2011-06-23
Stephan
S
aalfeld
Transf
o
r
mM
e
sh
M
appingWithMas
k
rounds tr
i
a
n
ge
l
b
o
unding
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
S
t
ephan Saalfeld
attempt to
g
et shared
function fo
r
lay
e
r al
i
gnm
e
nt
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Stephan Saalfeld
t
i
tled m
o
ntage dialog `Montag
e
' consistently with the
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
S
t
e
ph
a
n Sa
a
l
f
eld
Fixe
d
Threa
d
interruption in Align
.
co
n
nectTile
P
airs
.
.
.
commit
|
commitdiff
|
tree
2011-06-20
St
e
ph
a
n Saa
l
feld
`Mont
a
ge al
l
i
m
a
ges in this
l
a
yer
'
:
commit
|
commitdiff
|
tree
2011-06-17
Stephan Saalfeld
ElasticAlign fixes:
commit
|
commitdiff
|
tree
2011-06-16
Stephan
S
aalfeld
Merge br
a
nch
'
mas
t
er' into elastic-align
commit
|
commitdiff
|
tree
2011-06-16
Stephan Saalf
e
ld
comment test rp
i
nt
commit
|
commitdiff
|
tree
2011-05-27
Stephan Saalfeld
started w
i
th
Elastic A
l
ig
n
men
t
, layer a
l
ignme
n
t al
r
eady
.
.
.
commit
|
commitdiff
|
tree
2010-11-29
Stepha
n
S
aalfeld
Mer
g
e br
a
nch 'master' into m
p
icbg-mode
l
-
interface
commit
|
commitdiff
|
tree
2010-11-20
Stephan Saalfeld
tracking mpi
c
bg model-interface
commit
|
commitdiff
|
tree
2010-08-18
S
tephan
Saalfeld
m
picbg
.
tr
a
kem2
.
tr
a
nsform
.
Transfo
r
m
M
es
h
e
xtrapolat
e
s
.
.
.
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfeld
Fi
x
e
d
b
u
g 202
commit
|
commitdiff
|
tree
2010-08-16
S
t
e
phan Saalfeld
* add m
i
nimal absolu
t
e
n
u
m
ber of i
n
l
iers as a para
m
eter
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfeld
M
e
rge branch
'
master
'
i
n
to rej
e
ctconst
a
ntback
g
r
o
und
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfeld
Merge branc
h
'master'
o
f ssh://rep
o
.
or
.
c
z
/sr
v
/git/trakem2
commit
|
commitdiff
|
tree
2010-08-07
Steph
a
n
Saalfeld
Merge branc
h
'rejectconstan
t
bac
k
g
r
ound' of ssh://r
e
po
.
.
.
commit
|
commitdiff
|
tree
2010-08-07
Stephan Saalf
e
l
d
find
i
ng connecte
d
til
e
s mo
v
ed in
t
o base clas
s
commit
|
commitdiff
|
tree
2010-08-07
S
teph
a
n Saalf
e
ld
u
s
e outli
e
r fil
t
er in
opt
i
mizer
commit
|
commitdiff
|
tree
2010-08-07
Stephan Saalfeld
f
inding con
n
ect
e
d tiles moved
i
n
t
o
b
a
se
class
commit
|
commitdiff
|
tree
2010-08-06
S
tephan Saalfeld
Merge
b
ranch 'rejec
t
const
a
ntbac
k
ground
'
of
s
s
h
://
r
epo
.
.
.
commit
|
commitdiff
|
tree
2010-08-06
Stephan Saalfe
l
d
Fix wro
n
g
p
a
rameter choice in AlignTask
commit
|
commitdiff
|
tree
2010-08-05
Stephan
S
aalfeld
Merge branch 'master' in
t
o re
j
ectconstantbackg
r
o
u
n
d
commit
|
commitdiff
|
tree
2010-08-05
Stephan Saalf
e
ld
extended verbosity of the tile matching
commit
|
commitdiff
|
tree
2010-08-05
S
t
ep
h
an Saalfeld
Added
a filter to reject constant back
g
round pat
t
e
r
ns
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Stephan
Saalfeld
Me
r
ge branch 'master' of ssh://
r
epo
.
o
r
.
cz/s
r
v/git/trakem2
commit
|
commitdiff
|
tree
2010-03-19
S
t
e
p
h
an Saalfeld
Recovered the most im
p
ortatn of Ignacio's prev
i
ous
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
S
t
e
phan Saalfeld
Merge branch
'master' into lens-m
o
del
commit
|
commitdiff
|
tree
2010-03-19
Stephan
S
aalfeld
C
reated Polynomi
a
lModel2D, a wra
p
per for Verena Ka
y
nig'
s
commit
|
commitdiff
|
tree
2010-03-18
Step
h
an Saalfeld
Ad
d
ed the maximal accepted fa
c
tor to mea
n
PointMa
t
ch
.
.
.
commit
|
commitdiff
|
tree
2010-03-17
Stephan Saal
f
eld
Re
m
ove matches wi
t
h large
disp
l
aceme
n
t
fr
o
m the co
n
figuration
commit
|
commitdiff
|
tree
2010-02-23
Stephan Saalfeld
fix
e
d calib
r
ation of scale
d
snapshots when exporting
.
.
.
commit
|
commitdiff
|
tree
2010-02-22
S
te
p
han S
a
alfeld
fixed calibr
a
tion of scaled sna
p
s
hots
commit
|
commitdiff
|
tree
2010-02-19
Stephan Saa
l
feld
A
li
g
nTask: when deformin
g
, tiles ARE already
i
n p
l
ace
commit
|
commitdiff
|
tree
2010-02-19
Stephan
S
aalfeld
Ali
g
n
T
ask: Fixed
mi
s
suse of a
s
tat
i
c va
r
iable
.
commit
|
commitdiff
|
tree
2010-02-19
Stephan Saalfe
l
d
Remove the never used shake
m
ethod from a
b
stract
Model
.
commit
|
commitdiff
|
tree
2010-02-10
Ste
p
h
a
n Saalf
e
l
d
Fixed
a bug that made the or
i
ginal
image app
e
ar behi
n
d
commit
|
commitdiff
|
tree
2010-02-09
S
tepha
n
Saalf
e
ld
Synchronized screen
P
atchRanges
commit
|
commitdiff
|
tree
2010-02-09
S
t
ephan Saalf
e
l
d
mi
n
or c
l
eanup in lenscorre
c
tion
commit
|
commitdiff
|
tree
2010-02-09
Steph
a
n Saalfeld
Ad
d
ed TransformM
e
shM
a
ppingWit
h
Masks for more ef
f
icient
.
.
.
commit
|
commitdiff
|
tree
2010-02-09
Stephan
Saalfeld
NonLinearTr
a
nsf
o
rmMode can propagate th
e
tr
a
n
sf
o
rmation
.
.
.
commit
|
commitdiff
|
tree
2010-02-07
S
t
eph
a
n Saa
l
feld
For now, don't scale max
E
psilon
.
commit
|
commitdiff
|
tree
2010-02-07
Ste
p
h
an Saa
l
f
e
ld
Align Mu
l
ti-Lay
e
r-Mosa
i
c: Use up to 2x maxOctav
e
Size
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Steph
a
n Saalf
e
ld
Finishe
d
t
h
e
deform operation to cons
i
der all graphs
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan Sa
a
l
f
eld
Fi
x
ed Floa
t
.
M
I
N_VA
L
UE to Float
.
MAX_VALUE where it remained
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Step
h
an
S
aalfeld
alignMultiLay
e
rM
o
s
aic finall
y
us
e
s gr
a
ph-based pre
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Steph
a
n Saal
f
eld
ch
a
nged default
value of SIFT
.
maxOctaveSi
z
e = 600
commit
|
commitdiff
|
tree
2010-01-29
Stephan Sa
a
lfe
l
d
f
ix
e
d pairOverlap
p
ingTiles(
List, L
i
st,
L
i
s
t[] )
commit
|
commitdiff
|
tree
2010-01-28
Stephan Saalfeld
added correspondence
weight as a para
m
eter to
Align
.
.
.
commit
|
commitdiff
|
tree
2009-11-17
Stephan
S
aal
f
eld
Merge branch 'master'
i
nto bun
w
arpj
commit
|
commitdiff
|
tree
2009-11-05
S
teph
a
n Sa
a
lfeld
Mer
g
e branch 'master' int
o
bunwarpj
commit
|
commitdiff
|
tree
2009-11-04
St
e
phan
S
aa
l
feld
M
e
rge bran
c
h 'master' into bunwa
r
p
j
commit
|
commitdiff
|
tree
2009-11-03
S
t
e
phan Sa
a
lfeld
Fixe
d
Com
p
osit
e
Mod
e
s
to wo
r
k
i
n th
e
followin
g
configurations
commit
|
commitdiff
|
tree
2009-11-03
Stephan S
a
a
l
feld
R
evert "Work around
a
n
noying bug in Graphics2D, in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
S
t
epha
n
Saa
l
feld
Fixed Co
m
p
o
siteModes
t
o work in th
e
f
ollowing co
n
figuration
s
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfe
l
d
Separati
n
g
AlignLayersTask
f
ro
m
AlignTask
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
Revert "W
o
rk
a
round a
n
n
o
yi
n
g
bu
g
in
Graphics2D, in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan S
a
alfeld
M
erge
b
ranc
h
'mast
e
r
'
into composite-mod
e
s
commit
|
commitdiff
|
tree
2009-11-03
Stephan S
a
al
f
eld
AddARGBC
o
mposi
t
e can handle image with no alpha
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saa
l
feld
Added a comment in Align
commit
|
commitdiff
|
tree
2009-10-14
Stephan Saalfel
d
r
efactor
e
d a
mi
s
named me
t
hod and
sta
t
ified some parameters i
n
commit
|
commitdiff
|
tree
2009-10-14
Stephan S
a
alfeld
synchron
i
zed potentia
l
l
y
c
o
n
currency
unsafe match insertion
.
.
.
commit
|
commitdiff
|
tree
2009-10-13
Stephan
S
aalfeld
F
i
xed the g
e
ometry issues
and adde
d
sup
p
o
rt fo
r
al
l
.
.
.
commit
|
commitdiff
|
tree
2009-10-09
Stephan Saalfeld
Catch
i
ng and h
a
ndling OutOfMemoryErrors i
n
F
eat
u
reExt
r
a
ction
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
S
tepha
n
Saalfeld
Cosme
t
ics in AlignTask
a
nd Si
m
ilarityMode
l
2D
commit
|
commitdiff
|
tree
2009-10-08
Steph
a
n
S
aalfeld
lenscorrection
s
tops no
w
later but l
a
t
e
st afte
r
the
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
S
t
e
p
h
an Saalfeld
Merge branch 'm
a
st
e
r' of ssh://repo
.
or
.
cz/
s
rv/gi
t
/tra
k
e
m2
commit
|
commitdiff
|
tree
2009-10-07
S
tephan Saalfeld
M
e
rge branch 'master' of ssh:
/
/repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2009-10-07
Stephan Saal
f
eld
Fix 0
.
5grey background for ByteProcessors in
commit
|
commitdiff
|
tree
2009-09-24
Stephan Sa
a
lfeld
Merge br
a
nch 'master' of ss
h
://repo
.
or
.
cz/srv/gi
t
/trakem2
commit
|
commitdiff
|
tree
2009-09-23
Stephan Saalfeld
Saving a lot
o
f
RAM in
visualizing the
l
ens dis
t
ortion
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Ste
p
han Saalf
e
ld
Me
r
ge b
r
anch 'stack' into align
commit
|
commitdiff
|
tree
2009-09-17
Ste
p
han S
a
alfeld
Hopefully
fi
x
ed the scalin
g
in
Stack
commit
|
commitdiff
|
tree
2009-09-17
Step
h
a
n
Saalfeld
Merge branc
h
'stack' into align
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalfeld
Merge bran
c
h 'stack' of ssh:
/
/rep
o
.
o
r
.
cz/
s
rv/git/
t
rake
m
2
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalfel
d
Merge br
a
nch 'stack
'
i
nto align
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalfeld
sepa
r
ated t
h
e
a
ctual align
L
ayersLinearly job fro
m
t
h
e
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
S
t
e
p
han Saa
l
fe
l
d
Lo
a
der u
s
es db_
l
o
ck
commit
|
commitdiff
|
tree
2009-09-16
S
t
e
p
han Sa
a
lfel
d
M
e
rge br
a
nch 'al
i
gn' of ssh://repo
.
or
.
cz/srv/git/t
r
akem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-16
Stephan Saa
l
fel
d
Fixe
d
a bu
g
that
p
revented the m
u
lti
-
lay
e
r mosaicki
n
g
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
St
e
phan Saalfeld
Merge branch 's
t
ack' of ssh://repo
.
or
.
cz
/
srv/git/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
St
e
phan
Saalfeld
a very intermediate commi
t
that interrupts me
a
t star
t
ing the
commit
|
commitdiff
|
tree
2009-09-11
Stephan
S
aalfeld
de
c
aching was
not successful---truing anot
h
er one
.
.
.
commit
|
commitdiff
|
tree
2009-09-11
S
t
e
phan Saalf
e
l
d
De
c
ache proce
s
sed patche
s
afte
r
application
o
f the CT
.
commit
|
commitdiff
|
tree
2009-09-10
Steph
a
n
Sa
a
lfeld
Mer
g
e branch 'ali
g
n' of ssh://repo
.
or
.
cz/srv/git
/
trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
S
tephan
Saalf
e
ld
Added a
d
efor
m
option to t
h
e multi-layer-m
o
sai
c
method
.
commit
|
commitdiff
|
tree
2009-09-10
Step
h
an Saalfeld
Ad
d
e
d a def
o
rm option to the mu
l
ti-
l
ayer-mosaic method
.
commit
|
commitdiff
|
tree
2009-09-10
S
t
ephan S
a
alfeld
A
d
ded a conveni
e
nce method to export a flat
i
mag
e
f
o
r
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan Saa
l
feld
Cosmetics
(
removed some non-required impo
r
ts and
e
mpty
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan Saalfeld
A a stati
c
method
to get the boun
d
i
n
g
b
o
x
o
f
a col
l
ection of
commit
|
commitdiff
|
tree
2009-09-02
Stephan Saalfeld
* Fixed wrong bl
u
rring
commit
|
commitdiff
|
tree
next