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ElasticMontage:
2011-06-29
S
t
e
phan
S
aa
l
f
eld
Elast
i
c
M
ontage
:
commit
|
commitdiff
|
tree
2011-06-29
Stephan S
a
alfel
d
Merge
b
r
anch 'master' into elasti
c
-align
commit
|
commitdiff
|
tree
2011-06-28
Ste
p
han Saalfeld
Merge branch 'master' in
t
o
elastic-alig
n
commit
|
commitdiff
|
tree
2011-06-28
Stephan Saal
f
eld
Added `seems-to-work
'
elastic montag
i
ng
.
Missing pa
r
ts are
commit
|
commitdiff
|
tree
2011-06-28
Stephan Saal
f
eld
*
made Patch
.
Patch
I
mage a stati
c
c
lass (it has no refer
e
nces
.
.
.
commit
|
commitdiff
|
tree
2011-06-24
S
tephan S
a
alfel
d
ad
d
ed Pair to Abstra
c
t
commit
|
commitdiff
|
tree
2011-06-23
Stephan Saalfeld
Align
.
java
:
moved twice
i
mplemen
t
e
d Model fitting and
.
.
.
commit
|
commitdiff
|
tree
2011-06-23
S
t
e
p
han
S
aalfeld
E
lasticAlign u
s
e
s the local sif
t
Param for
i
den
t
i
f
ying
commit
|
commitdiff
|
tree
2011-06-23
St
e
p
h
a
n Saalfe
l
d
Tr
a
nsformMe
s
h
M
appingWithMa
s
k rounds triangel bounding
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Stephan Saalfel
d
a
t
tempt
t
o get shared fun
c
tion for layer alignment
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Stephan
S
aalfeld
tit
l
e
d m
o
ntage
d
i
alog `Montage' con
s
istentl
y
w
ith the
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Steph
a
n Saalfeld
F
ixe
d
Thread int
e
rruption in Align
.
con
n
ectTilePairs
.
.
.
commit
|
commitdiff
|
tree
2011-06-20
Steph
a
n Saalfeld
`Montage
all images in this laye
r
':
commit
|
commitdiff
|
tree
2011-06-17
Stephan Saalfel
d
Ela
s
ticAlign fi
x
es:
commit
|
commitdiff
|
tree
2011-06-16
St
e
p
han S
a
alf
e
ld
Merge
branch 'mast
e
r' into elastic
-
a
l
ign
commit
|
commitdiff
|
tree
2011-06-16
Stephan Saal
f
e
ld
comment test rpint
commit
|
commitdiff
|
tree
2011-05-27
Step
h
a
n
Saalfeld
started wit
h
E
lastic
A
lignment, la
y
er alignment
a
lready
.
.
.
commit
|
commitdiff
|
tree
2010-11-29
Stephan Saalfeld
M
erge
b
ranc
h
'mast
e
r' i
n
t
o
mpicbg-model-i
n
terface
commit
|
commitdiff
|
tree
2010-11-20
Stephan Saalfeld
tracking
m
picbg mode
l
-inter
f
ace
commit
|
commitdiff
|
tree
2010-08-18
Stepha
n
Saalfel
d
mpicbg
.
trakem2
.
t
r
a
ns
f
orm
.
TransformMesh extrap
o
l
ates
.
.
.
commit
|
commitdiff
|
tree
2010-08-16
Steph
a
n Saalfeld
F
i
xed bug 202
commit
|
commitdiff
|
tree
2010-08-16
S
tephan Sa
a
lfeld
* add
minimal
absolute number of inlier
s
as a paramete
r
commit
|
commitdiff
|
tree
2010-08-16
Step
h
a
n Saalfeld
Merge bra
n
ch '
m
ast
e
r' into rejectconstantb
a
ckground
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saa
l
fel
d
Merge bra
n
ch 'm
a
s
ter' of ssh://repo
.
or
.
cz
/
srv/git/trakem
2
commit
|
commitdiff
|
tree
2010-08-07
Stephan Saalfeld
M
e
r
g
e
branch '
r
e
jectconstantbackgrou
n
d' of ssh://r
e
po
.
.
.
commit
|
commitdiff
|
tree
2010-08-07
S
tephan
S
aal
f
eld
fin
d
ing
c
onnec
t
ed tiles
m
ove
d
into base
c
lass
commit
|
commitdiff
|
tree
2010-08-07
Stephan Saalfeld
use outlier filter in optimizer
commit
|
commitdiff
|
tree
2010-08-07
Steph
a
n S
a
alfeld
fi
n
ding conne
c
ted tiles
m
oved int
o
ba
s
e
c
lass
commit
|
commitdiff
|
tree
2010-08-06
S
t
ephan S
a
alfeld
Me
r
ge br
a
nch 'rejectconstantbackgrou
n
d' of ssh://repo
.
.
.
commit
|
commitdiff
|
tree
2010-08-06
S
tephan Saal
f
eld
Fix wrong
p
arameter choic
e
in AlignTask
commit
|
commitdiff
|
tree
2010-08-05
Stepha
n
Saalfeld
Merge branch 'master' into rej
e
ctcons
t
a
n
tb
a
ckground
commit
|
commitdiff
|
tree
2010-08-05
Stephan Saalfeld
extended verbosity
of the tile matc
h
i
n
g
commit
|
commitdiff
|
tree
2010-08-05
Stephan Saa
l
feld
Added a
f
ilter to reject cons
t
ant
background patterns
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saalfel
d
Merge branch 'master'
o
f
ssh:
/
/
r
e
po
.
or
.
c
z/s
r
v/g
i
t
/
trake
m
2
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saalfeld
Recove
r
ed the most importatn of
Ignacio'
s
previous
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Stephan Sa
a
l
feld
Merge
bra
n
ch 'ma
s
ter' into lens-m
o
del
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saalfeld
Cr
e
a
t
ed Polyno
m
ialModel2D, a wrapp
e
r for Veren
a
Kaynig's
commit
|
commitdiff
|
tree
2010-03-18
Stephan
Saa
l
f
e
l
d
A
dded the maxim
a
l accepte
d
f
actor to mean PointMat
c
h
.
.
.
commit
|
commitdiff
|
tree
2010-03-17
Stephan Saalfeld
Remove matches wi
t
h large
d
isplacement f
r
om
th
e
configuration
commit
|
commitdiff
|
tree
2010-02-23
Ste
p
ha
n
Saa
l
feld
fix
e
d c
a
lib
r
ation of scaled snapshots whe
n
exporting
.
.
.
commit
|
commitdiff
|
tree
2010-02-22
S
t
ephan Saa
l
feld
f
i
xe
d
calibration of
s
c
a
l
ed s
n
apshots
commit
|
commitdiff
|
tree
2010-02-19
Stephan Saalfeld
AlignTask: when def
o
rming,
t
il
e
s ARE
alr
e
ady
in place
commit
|
commitdiff
|
tree
2010-02-19
S
tephan Sa
a
lfeld
AlignTask: Fixed
m
issuse of a sta
t
ic va
r
iable
.
commit
|
commitdiff
|
tree
2010-02-19
Ste
p
han Saalfel
d
Remove the never
u
sed
s
hake meth
o
d from abstrac
t
M
odel
.
commit
|
commitdiff
|
tree
2010-02-10
Stephan Saa
l
f
e
l
d
Fi
x
ed a bug that made th
e
original
i
mage
a
ppe
a
r behind
commit
|
commitdiff
|
tree
2010-02-09
Stephan
Sa
a
lfeld
Synchr
o
nize
d
screenP
a
tchRanges
commit
|
commitdiff
|
tree
2010-02-09
Stephan Saa
l
f
e
ld
minor cle
a
nup in lenscor
r
ection
commit
|
commitdiff
|
tree
2010-02-09
Stephan
S
a
alfeld
Added Tran
s
formMeshMapping
W
ithMasks
for more
e
fficient
.
.
.
commit
|
commitdiff
|
tree
2010-02-09
Stephan Saa
l
feld
NonLinear
T
ransformMode
can p
r
opagate the transformation
.
.
.
commit
|
commitdiff
|
tree
2010-02-07
Stephan Saa
l
f
eld
F
o
r now, don't scale maxEpsilon
.
commit
|
commitdiff
|
tree
2010-02-07
Stephan Saalfeld
Align Mult
i
-Layer-Mosa
i
c: Use up to 2x
m
axO
c
taveSize
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Ste
p
han Saal
f
eld
Finished the deform op
e
ration to consider all graphs
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan Saalfe
l
d
Fixed Float
.
M
IN_VA
L
U
E
to Float
.
MAX_
V
ALU
E
where it rema
i
ned
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
S
tep
h
an Saal
f
e
ld
a
lignMultiLayerMosaic finally u
s
es graph-ba
s
ed pre
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan Saalfeld
cha
n
g
e
d d
e
f
a
u
lt v
a
lue of SIFT
.
maxOct
a
veSize =
60
0
commit
|
commitdiff
|
tree
2010-01-29
S
tephan Saalf
e
ld
fixed p
a
irOverlappingTiles( List, List, List[]
)
commit
|
commitdiff
|
tree
2010-01-28
S
t
e
p
han Saalfeld
adde
d
correspondence
w
e
i
g
ht a
s
a p
a
ramete
r
to Align
.
.
.
commit
|
commitdiff
|
tree
2009-11-05
Stephan Saa
l
feld
Mer
g
e branch
'ma
s
t
er' i
n
to bunwarpj
commit
|
commitdiff
|
tree
2009-11-04
Stephan Saalfeld
Merge bra
n
c
h
'maste
r
' into bunwarpj
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saal
f
eld
Fixed
Comp
o
s
i
t
e
M
odes to work in the foll
o
wing configu
r
ations
commit
|
commitdiff
|
tree
2009-11-03
S
t
ephan Saalfeld
Revert "Work around annoying bu
g
in Graphics2D, in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan S
a
alfeld
F
ixed CompositeModes to
wo
r
k
in t
h
e following configurations
commit
|
commitdiff
|
tree
2009-11-03
Steph
a
n
Saalfeld
Separating Ali
g
nLayersTas
k
f
r
om AlignTask
.
commit
|
commitdiff
|
tree
2009-11-03
S
t
ephan Saalf
e
ld
Rever
t
"Work around annoying bug in Graphics2D,
in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
St
e
p
h
an S
a
alfel
d
Merg
e
branch 'master' into compos
i
t
e
-modes
commit
|
commitdiff
|
tree
2009-11-03
Stephan
Saalfeld
AddARGBComposite can handle
i
m
a
ge w
i
t
h
no
a
l
p
ha
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan Sa
a
l
feld
Added a com
m
ent in Align
commit
|
commitdiff
|
tree
2009-10-14
Stephan Sa
a
lfeld
refactored a misnamed method and statified some para
m
eters in
commit
|
commitdiff
|
tree
2009-10-14
S
t
ephan Saalf
e
ld
s
ynchro
n
ized potent
i
ally conc
u
rr
e
ncy unsafe m
a
tch inserti
o
n
.
.
.
commit
|
commitdiff
|
tree
2009-10-13
S
tephan S
a
a
l
feld
Fixed the geometry issues and added
s
upport for all
.
.
.
commit
|
commitdiff
|
tree
2009-10-09
Stephan Saal
f
el
d
C
a
tching and
ha
n
dling
O
utOfMe
m
oryE
r
rors in Featu
r
e
Extraction
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Stephan Saal
f
eld
Cosmetics in
A
lig
n
Task and SimilarityMo
d
el2D
commit
|
commitdiff
|
tree
2009-10-08
St
e
phan S
a
alfeld
l
e
nscorrection sto
p
s now l
a
ter
b
ut
l
a
t
est
after t
h
e
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Stephan Saalfeld
Me
r
ge
b
ranch 'master' of ssh://repo
.
o
r
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2009-10-07
St
e
phan Saalfeld
Me
r
ge branch
'm
a
s
ter' o
f
s
s
h://re
p
o
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2009-10-07
Stephan Saalfeld
F
i
x 0
.
5
g
rey
background for ByteProcessor
s
in
commit
|
commitdiff
|
tree
2009-09-24
Step
h
an
Saalf
e
ld
Me
r
ge
bra
n
ch 'mas
t
e
r'
o
f ssh:/
/
repo
.
or
.
c
z
/srv/gi
t
/t
r
akem2
commit
|
commitdiff
|
tree
2009-09-23
Stephan Saalf
e
ld
Saving a lot
of RAM in visualizin
g
th
e
lens
d
istortion
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Steph
a
n Saalfeld
Me
r
ge branch 'stack' into align
commit
|
commitdiff
|
tree
2009-09-17
S
tephan Saalfeld
Hopeful
l
y fixed the scaling
i
n
Stack
commit
|
commitdiff
|
tree
2009-09-17
S
t
e
p
h
a
n
S
aalfeld
Me
r
g
e branch 'st
a
c
k' into align
commit
|
commitdiff
|
tree
2009-09-17
Stephan Sa
a
lfeld
Merge branch 'stack' of ss
h
:
/
/repo
.
or
.
cz/sr
v
/git/trak
e
m2
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalfeld
Merge
b
ranch 'stack' in
t
o align
commit
|
commitdiff
|
tree
2009-09-17
Steph
a
n S
a
alfeld
separated the ac
t
u
al al
i
gnLaye
r
sLine
a
rly job
f
ro
m
the
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Ste
p
ha
n
Saal
f
eld
Loade
r
uses db_
l
ock
commit
|
commitdiff
|
tree
2009-09-16
Stephan Saalfeld
M
e
rge branch 'align' of ssh://rep
o
.
or
.
cz/srv/g
i
t
/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-16
S
tephan Saalfeld
Fixed a
b
u
g
that prevent
e
d the multi-layer mosaicking
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
Stephan
Saalfeld
Merge
branch
'
stack
'
of
ssh
:
//repo
.
or
.
cz/s
r
v/
g
it/t
r
akem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
Stephan Saalfel
d
a very intermediat
e
commit th
a
t interrupts me at st
a
rting the
commit
|
commitdiff
|
tree
2009-09-11
S
tephan
S
aal
f
eld
de
c
aching wa
s
not
s
ucc
e
ssful---truing another one
.
.
.
commit
|
commitdiff
|
tree
2009-09-11
Step
h
an Saalfeld
Decache p
r
o
c
essed pa
t
ches after appl
i
cation of the CT
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan Saalfeld
M
erge branc
h
'
align' of ssh:/
/
re
p
o
.
or
.
cz/srv/
g
it/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Stepha
n
Saalfe
l
d
A
d
d
e
d a deform option
to
t
h
e mu
l
ti-layer-mosaic method
.
commit
|
commitdiff
|
tree
2009-09-10
S
t
e
p
han S
a
alfeld
Added a deform option to the
m
ult
i
-la
y
er-
m
osaic
me
t
ho
d
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan Saalfeld
Ad
d
ed a conv
e
n
ien
c
e method to export a flat image fo
r
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan Saalfeld
Cos
m
etics (removed some non-required imp
o
rts and empty
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Ste
p
ha
n
Saalfeld
A a sta
t
ic metho
d
to ge
t
the
b
o
unding box
of a collect
i
on
of
commit
|
commitdiff
|
tree
2009-09-02
St
e
p
h
an
S
a
alfeld
* Fixed wrong blurring
commit
|
commitdiff
|
tree
2009-09-01
St
e
p
h
an Saalfeld
i
c
t
S
c
ale was inverse---
a
nyway---th
e
re are remai
n
i
ng
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
S
t
e
p
han Sa
a
lfeld
Pseudo-
f
ix for lo
c
k
ing issu
e
s
commit
|
commitdiff
|
tree
next