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next development cycle
2015-09-04
Ste
p
han Saalfeld
n
e
xt development c
y
c
l
e
commit
|
commitdiff
|
tree
2015-09-03
Stephan Saalf
e
ld
pom-tr
a
kem2-1
.
4
.
0
commit
|
commitdiff
|
tree
2015-09-03
Step
h
an Saalf
e
ld
ad
d
ed multi-threading
f
o
r
coeffici
e
n
t
s ma
t
chi
n
g
commit
|
commitdiff
|
tree
2015-09-03
S
tep
h
an Sa
a
lfeld
put match intensities comma
n
d
s
in
t
o workers to block
.
.
.
commit
|
commitdiff
|
tree
2015-09-02
Step
h
an Saalfel
d
Wo
r
k
i
ng ve
r
sion
with
o
ut multi-threading an
d
bureau
c
rats
commit
|
commitdiff
|
tree
2015-09-02
Stephan S
a
al
f
eld
incl
u
d
e
d matc
h
intensities plugin
,
build with SNAPSHOTS
.
.
.
commit
|
commitdiff
|
tree
2015-08-31
St
e
pha
n
Saalfeld
Merg
e
pull request #11
f
rom hanslovsky/master
commit
|
commitdiff
|
tree
2015-04-07
Stephan
Saalfel
d
n
e
xt development cy
c
le
commit
|
commitdiff
|
tree
2015-04-07
Stephan S
a
a
l
feld
release pom-trakem2
-
1
.
3
.
3
commit
|
commitdiff
|
tree
2015-03-26
Stephan Saalfeld
re-release
p
om-trakem2-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-24
S
tephan Saalfeld
next development c
y
c
l
e
commit
|
commitdiff
|
tree
2015-03-24
Step
h
an
S
aal
f
eld
re-re
l
ea
s
e pom-trakem2-
1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-19
S
te
p
h
a
n
S
a
alfeld
next
dev
e
l
opment cyc
l
e (problem with Eclipse Kepler
.
.
.
commit
|
commitdiff
|
tree
2015-03-19
Stepha
n
Saalfeld
r
e
lease pom-trakem2-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-07
Stephan
Saalfeld
next development c
y
cle
commit
|
commitdiff
|
tree
2015-03-07
Stephan Saalfeld
r
e
lease
commit
|
commitdiff
|
tree
2015-02-14
Stephan
S
a
a
lfeld
ne
x
t developmen
t
cycle
commit
|
commitdiff
|
tree
2015-02-14
Stephan Saalfe
l
d
r
elease
commit
|
commitdiff
|
tree
2015-02-14
St
e
phan S
a
alfe
l
d
release
commit
|
commitdiff
|
tree
2015-01-14
Stephan Saa
l
feld
a
dd
e
d
getters for mls2 p, q, and w
commit
|
commitdiff
|
tree
2015-01-12
Stephan Saalfeld
A
d
ded Er
i
c Trautman's check fo
r
n
u
mber of threads to
.
.
.
commit
|
commitdiff
|
tree
2015-01-12
S
t
ephan Saalfeld
F
ixed
Value2NoiseFilter max expo
r
t
commit
|
commitdiff
|
tree
2014-12-19
Stephan
S
aalfeld
bump
to
next developmen
t
c
y
cle
commit
|
commitdiff
|
tree
2014-12-19
Stephan Saalfeld
Merge
r
emote-tracking branch 'origin
'
commit
|
commitdiff
|
tree
2014-12-19
S
t
ephan Saalfeld
r
e
p
r
o
ducible bu
i
l
d po
m
-tra
k
em2-1
.
1
.
2
commit
|
commitdiff
|
tree
2014-12-19
Stephan S
a
alfe
l
d
separated CoordinateTransform par
t
s
o
f
lenscor
r
ection
.
.
.
commit
|
commitdiff
|
tree
2014-12-18
Stepha
n
S
a
alfeld
added
m
ultiple level downsampl
i
ng
f
or ColorPr
o
cessor
commit
|
commitdiff
|
tree
2014-12-17
Stephan Saalfe
l
d
b
ump to next development
c
y
c
le
commit
|
commitdiff
|
tree
2014-12-17
S
t
ephan Saal
f
eld
second t
r
y to
make reproducible bu
i
ld po
m
-tr
a
kem2-1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-17
Stepha
n
Saa
l
f
e
l
d
M
erge branch 'inten
s
i
ty
-
transfo
r
m
'
commit
|
commitdiff
|
tree
2014-12-13
Stephan
Saalfeld
b
u
mp to next d
e
v
elopment cycle
commit
|
commitdiff
|
tree
2014-12-13
Ste
p
h
a
n Saalfe
l
d
reproduci
b
le build
p
o
m
-
trakem2-1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-12
Stephan Sa
a
lfe
l
d
Merge remote
-
t
r
acking bra
n
ch 'origin/master'
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalfeld
bump t
o
new de
v
elopme
n
t cycle
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalfeld
reproducible
build po
m
-trakem2-1
.
1
.
0
commit
|
commitdiff
|
tree
2014-12-12
Stephan
S
aalfeld
Merge branch 'master' of github
.
com:trakem2/TrakEM
2
commit
|
commitdiff
|
tree
2014-12-12
Stepha
n
Saalfeld
a
d
ded ValueToNoise f
i
lt
e
r which
fi
l
ls
a g
i
ven intensity
.
.
.
commit
|
commitdiff
|
tree
2014-11-12
S
tephan Saalfeld
Update REA
D
M
E
commit
|
commitdiff
|
tree
2014-11-12
Stephan
S
aa
l
f
eld
Upda
t
e REA
D
ME
commit
|
commitdiff
|
tree
2014-11-07
St
e
phan
Saalfeld
Merge branch '
m
aste
r
' into
c
oor
d
XfmFi
x
commit
|
commitdiff
|
tree
2014-11-07
Step
h
an Sa
a
lfe
l
d
M
erge remote-tracki
n
g branch 'origin/intensity-tra
n
sform'
commit
|
commitdiff
|
tree
2014-10-04
St
e
phan Saal
f
eld
added RobustNormali
z
edLoc
a
lContrast
F
ilte
r
, fast and
.
.
.
commit
|
commitdiff
|
tree
2014-10-04
Stephan Saalfeld
Chan
g
ed defau
l
t block radius in
N
o
r
m
aliz
e
LocalContrast
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
St
e
phan Saalfe
l
d
auto-re
m
oved s
o
m
e tr
a
ining whitesp
a
ces
commit
|
commitdiff
|
tree
2014-10-02
Ste
p
han Sa
a
l
f
e
ld
ad
d
ed r
u
n
method that does no
t
ne
e
d a worke
r
for easier
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Ste
p
han Saalfeld
auto-remov
e
d some t
r
ailing whitespac
e
s
commit
|
commitdiff
|
tree
2014-10-02
S
tephan Sa
a
l
feld
pa
r
alleliz
e
d
int
e
r
s
ectio
n
tests for pairOverl
a
ppingTiles
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saalfeld
aut
o
-finalize con
s
t
a
nt
p
roperties and
p
a
ra
m
ete
r
s in
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saalfeld
t
h
r
ea
d
safe Utils
.
ensure(
F
il
e
)
commit
|
commitdiff
|
tree
2014-06-06
Stephan Sa
a
lfeld
fixe
d
bug in generation
o
f
a
lphamas
k
s
commit
|
commitdiff
|
tree
2014-06-05
Stephan
Saalfeld
externalized Distorti
o
n
C
o
r
rect
i
on
.
run to enable c
a
lling
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
S
tephan
S
a
alfeld
E
cli
p
se
a
utu-cosmetics in Distor
t
i
o
nCorrec
t
ion
commit
|
commitdiff
|
tree
2014-05-19
Steph
a
n S
a
alfel
d
Merge branch 'ma
s
ter' into intensity-tra
n
sfor
m
commit
|
commitdiff
|
tree
2014-05-19
S
t
ephan Sa
a
lfeld
use s
t
a
ndard writer for c
o
ordinatetransforms
commit
|
commitdiff
|
tree
2014-05-19
S
t
e
p
han
S
aalfeld
d
epend on javax
.
media for jai
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saalfeld
added methods for dow
n
s
a
mpli
n
g
m
ore than one le
v
el
commit
|
commitdiff
|
tree
2013-10-10
Stephan Saalfeld
repla
c
e
d
plu
g
ins
.
config wit
h
t
h
e
F
i
ji version
commit
|
commitdiff
|
tree
2013-09-20
S
tephan Saalfeld
M
e
r
g
e
b
ranch
'master' of
s
sh://r
e
po
.
o
r
.
cz/s
r
v/git/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Stephan Saalf
e
ld
Merge
b
ranch 'mast
e
r' of
s
s
h://repo
.
or
.
cz
/
srv/git/tra
k
e
m2
commit
|
commitdiff
|
tree
2013-09-19
S
t
e
phan Saalfeld
P
a
r
allel pai
r
Ov
e
rlappingTil
e
s
d
id not work and
rep
o
rted
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan
Saalfeld
Merge bra
n
ch '
m
a
ster' of ssh://repo
.
or
.
cz/srv/git/t
r
akem2
commit
|
commitdiff
|
tree
2013-09-16
St
e
p
h
a
n Saalf
e
ld
re
-
a
d
ded le
g
a
cy opt
i
mizer f
o
r spring mes
h
es, th
i
s would
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Steph
a
n
Saalfeld
T
2
-
NIT/pom
.
xml
c
an inher
i
t
vers
i
on number
f
rom pare
n
t
commit
|
commitdiff
|
tree
2013-08-14
St
e
phan Saalfel
d
added mi
s
sing dependenc
i
es to
java3d core-uti
l
s and
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
Stephan Saalfeld
s
e
t
p
are
n
t pom of pom-trakem
2
to
pom
-
fiji
.
2
.
0
.
0-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
S
tephan Saalfe
l
d
Merge
b
ranch 'spring-mesh2' of ssh://repo
.
o
r
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
S
t
ephan Saalf
e
ld
Merge
branc
h
'master'
i
nto spring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Sa
a
lfeld
raised mpicbg depe
n
dency
v
ersion to
0
.
6
.
1-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfe
l
d
raised dependency to
Si
m
ple_Neuri
t
e_Tracer to 2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
S
t
ephan Saalfe
l
d
Merge
b
ranch 'ma
s
ter
'
into sp
r
ing-m
e
sh2
commit
|
commitdiff
|
tree
2013-08-12
Ste
p
han
S
aalf
e
ld
a
d
ded c
o
mmen
t
s an
d
aut
o
-
f
i
n
a
lize in
D
istortionCor
r
ect
i
on/NLT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
added mp
i
cbg
.
vers
i
on as maven prop
e
rt
y
,
commit
|
commitdiff
|
tree
2013-05-06
Stephan Saa
l
f
eld
track move of t
h
e
imglib1
d
e
pe
n
dency
commit
|
commitdiff
|
tree
2013-04-22
St
e
pha
n
Saa
l
feld
Merge branch
'ma
s
t
e
r
' into s
p
ring-mesh2
commit
|
commitdiff
|
tree
2013-03-05
St
e
phan Saalfeld
Merge branch 'master' into sp
r
i
n
g-m
e
sh2
commit
|
commitdiff
|
tree
2013-01-18
St
e
phan
Saalfe
l
d
use arraylist where arraylists are re
t
urned
commit
|
commitdiff
|
tree
2013-01-16
S
teph
a
n Saa
l
feld
adj
u
st mpicbg spr
i
ng-mes
h
2 which needs less damp
i
ng
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saalfeld
Fixed bug in Patch
.
ge
t
Full
C
oordinateTr
a
nsfo
r
m th
a
t
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saalfeld
Changed fixedPatches/Tiles inp
u
t coll
e
ction to Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
S
tephan Saalfel
d
Pair constr
u
c
tor has to be public
commit
|
commitdiff
|
tree
2013-01-10
Stephan S
a
alfeld
forgot to set
i
s
A
ligned flag in elasti
c
layer alignment
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Stephan Saalfeld
e
l
a
s
tic mont
a
ge param mus
t
b
e
public
commit
|
commitdiff
|
tree
2013-01-07
S
tephan Sa
a
lf
e
ld
a
dded
Patch
.
getFul
l
CordinateTra
n
sform
(
)
w
hich genera
t
es a
commit
|
commitdiff
|
tree
2013-01-07
Stephan Saalfeld
* remov
e
d isAligned
from A
b
stract Param c
l
ass
commit
|
commitdiff
|
tree
2013-01-05
S
t
ephan
S
a
alfel
d
877: it
i
s
legal
for lay
e
rTh
i
ng to
b
e
null
commit
|
commitdiff
|
tree
2012-12-21
Ste
p
han Saalfeld
Correct
e
d
s
everal long-standing issues wi
t
h
SIFT-linear and
commit
|
commitdiff
|
tree
2012-12-19
Steph
a
n Saalfeld
Regulariz
e
dLaye
r
Ali
g
n
m
ent got mo
r
e flexibl
e
API met
h
ods and
commit
|
commitdiff
|
tree
2012-12-19
St
e
p
han
Sa
a
lf
e
ld
clearin
g
cache in layer alignment must be default tr
u
e
commit
|
commitdiff
|
tree
2012-12-19
St
e
phan S
a
alfe
l
d
print optimizer
r
es
u
lts
a
nd
do not prin
t
"match
i
ng
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
do not
rem
o
v
e
empt
y
layers in la
y
e
r alignment
commit
|
commitdiff
|
tree
2012-11-07
Steph
a
n
Sa
a
lfeld
fixed
v
ers
i
o
n numb
e
r of mpicbg depende
n
c
y
commit
|
commitdiff
|
tree
2012-11-07
Ste
p
h
a
n
S
aalfeld
f
ixed mer
g
e error: mo
v
ed RobustNo
r
m
a
lizeLocalContrast
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
Steph
a
n Saalfeld
multi-threaded Ro
b
ustNormalizeLocalContrast mai
n
body
commit
|
commitdiff
|
tree
2012-09-01
St
e
phan Sa
a
lfeld
Removed DisplayCan
v
as
.
setDrawing
C
olor(
i
n
t
,i
n
t,bool
e
an
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Steph
a
n Saalfeld
Mer
g
e branch 'master' of ss
h
://repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-08-31
St
e
ph
a
n Saalfeld
a
d
ded e
x
peri
m
en
t
a
l loca
l
contr
a
s
t
enhancer R
o
b
us
t
N
o
rmal
i
zeLo
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
Ste
p
han Sa
a
lfeld
removed obsolete choice fro
m
al
i
gn layers dialog
commit
|
commitdiff
|
tree
2012-06-26
Steph
a
n
S
aalfe
l
d
spli
t
ela
s
tic montage dialog
f
or
block matching
a
nd use
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfeld
M
erge
b
ranch 'mast
e
r' of ssh://repo
.
or
.
cz
/
s
r
v
/git/trakem2
commit
|
commitdiff
|
tree
2012-06-26
Step
h
an Saalfeld
use an
d
do not ignore alpha
i
n helper method
commit
|
commitdiff
|
tree
next