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Merge branch 'master' into spring-mesh2
2011-06-20
S
tephan
Saalfeld
`Montage all im
a
ges in th
i
s laye
r
':
commit
|
commitdiff
|
tree
2011-06-17
Stephan Saalfeld
E
l
ast
i
c
A
lign fixes:
commit
|
commitdiff
|
tree
2011-06-16
St
e
phan Sa
a
lfeld
Merge bra
n
c
h 'm
a
ster
'
i
nto e
l
astic
-
ali
g
n
commit
|
commitdiff
|
tree
2011-06-16
S
t
eph
a
n Saalfeld
comment test rp
i
nt
commit
|
commitdiff
|
tree
2011-05-27
Stephan Saalfeld
starte
d
with Elastic Al
i
g
n
ment, layer al
i
gnme
n
t
alrea
d
y
.
.
.
commit
|
commitdiff
|
tree
2010-11-29
Stephan
S
aalfeld
Mer
g
e br
a
nch 'mast
e
r' into mpicbg-model-
i
nte
r
face
commit
|
commitdiff
|
tree
2010-11-20
Stephan S
a
alfeld
t
racking mpicb
g
model
-
int
e
rface
commit
|
commitdiff
|
tree
2010-08-18
Stephan S
a
alfeld
mpicbg
.
trak
e
m2
.
transform
.
Transfor
m
Me
s
h extrapo
l
at
e
s
.
.
.
commit
|
commitdiff
|
tree
2010-08-16
Stephan Sa
a
l
feld
Fi
x
ed bug 202
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfeld
* add minimal
absolute number
o
f inlie
r
s
as a param
e
ter
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saal
f
eld
M
e
rge branch 'mas
t
e
r' into rej
e
ctconst
a
ntbac
k
ground
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saal
f
eld
Merge branch 'master'
o
f s
s
h://re
p
o
.
or
.
cz
/
srv
/
git/trak
e
m
2
commit
|
commitdiff
|
tree
2010-08-07
Stephan Sa
a
lfel
d
Merge branch 'rejectconstan
t
backgr
o
und
'
of
s
sh://repo
.
.
.
commit
|
commitdiff
|
tree
2010-08-07
Stephan
S
aalfeld
findi
n
g co
n
nected tile
s
moved into base
c
lass
commit
|
commitdiff
|
tree
2010-08-07
S
t
ephan Saal
f
eld
u
s
e outlie
r
f
i
lter
i
n optim
i
zer
commit
|
commitdiff
|
tree
2010-08-07
S
t
ephan
S
a
a
l
f
e
ld
findi
n
g connected
tiles mov
e
d into base class
commit
|
commitdiff
|
tree
2010-08-06
Stephan Saa
l
fel
d
Merg
e
bran
c
h 'rej
e
ctconstantbackgr
o
und' of ssh:
/
/repo
.
.
.
commit
|
commitdiff
|
tree
2010-08-06
Ste
p
han S
a
alfeld
Fix wron
g
parameter choice i
n
AlignTa
s
k
commit
|
commitdiff
|
tree
2010-08-05
St
e
phan Saalfeld
Merge bran
c
h 'm
a
st
e
r' into rejectcon
s
tantbackg
r
ound
commit
|
commitdiff
|
tree
2010-08-05
Steph
a
n
Saalfeld
e
x
tended verbosity of the
til
e
matching
commit
|
commitdiff
|
tree
2010-08-05
Stephan Saal
f
eld
A
d
d
ed a filter to reject constant background patterns
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
S
te
p
han Saalfeld
Me
r
ge branch
'master' of ssh://repo
.
or
.
c
z
/
s
rv/g
i
t
/
trakem2
commit
|
commitdiff
|
tree
2010-03-19
St
e
phan Saalfeld
Recovered the mo
s
t
importatn of Igna
c
io's
prev
i
ous
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
St
e
phan S
a
alfeld
Merge
branch 'master
'
in
t
o le
n
s-model
commit
|
commitdiff
|
tree
2010-03-19
Step
h
an Saa
l
f
e
ld
C
r
ea
t
ed Polynomia
l
Model2D, a
w
r
a
pper f
o
r Verena Ka
y
nig's
commit
|
commitdiff
|
tree
2010-03-18
Stephan Saalfeld
Added the max
i
mal accepted factor to mean PointMatch
.
.
.
commit
|
commitdiff
|
tree
2010-03-17
Stephan Saalfeld
R
e
move matches wi
t
h large d
i
splace
m
ent
from the configurat
i
on
commit
|
commitdiff
|
tree
2010-02-23
Stephan Saalfeld
fi
x
ed calibra
t
ion of scaled snapshots when
exporting
.
.
.
commit
|
commitdiff
|
tree
2010-02-22
Stephan
S
aal
f
e
l
d
fixed ca
l
ibration of sca
l
ed snap
s
hots
commit
|
commitdiff
|
tree
2010-02-19
Ste
p
han Saalfeld
AlignTas
k
: w
h
e
n
deforming,
tiles ARE already i
n
plac
e
commit
|
commitdiff
|
tree
2010-02-19
Ste
p
han
S
a
alfeld
Alig
n
T
a
sk: Fixed
missuse of a stat
i
c variable
.
commit
|
commitdiff
|
tree
2010-02-19
S
tephan Saal
f
eld
Remove th
e
n
ever u
s
e
d
s
hake method from abstract Model
.
commit
|
commitdiff
|
tree
2010-02-10
Stephan
S
aalf
e
l
d
Fixed a
b
ug that made the original
imag
e
appear behind
commit
|
commitdiff
|
tree
2010-02-09
Ste
p
h
an Saalfeld
Synchr
o
nized
s
c
reenPat
c
h
R
anges
commit
|
commitdiff
|
tree
2010-02-09
S
t
ephan Saal
f
e
ld
minor clea
n
up in lenscorr
e
c
tion
commit
|
commitdiff
|
tree
2010-02-09
S
tephan Saalfe
l
d
Add
e
d TransformMeshMapping
W
ithMask
s
for
more efficient
.
.
.
commit
|
commitdiff
|
tree
2010-02-09
Stepha
n
Saal
f
eld
Non
L
in
e
arT
r
ansf
o
r
m
M
ode can propagate
the transf
o
r
mation
.
.
.
commit
|
commitdiff
|
tree
2010-02-07
Stephan Saalfeld
For no
w
,
don't scale maxEpsilon
.
commit
|
commitdiff
|
tree
2010-02-07
Stepha
n
S
aalfeld
Align Multi-Layer-Mosaic:
Use up
t
o 2x maxO
c
tav
e
Size
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
S
t
ephan Saalfeld
F
i
n
i
shed t
h
e d
e
form
operation t
o
consider al
l
g
r
aphs
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
S
t
ephan S
a
a
lfeld
F
ixed Float
.
MIN_VA
L
UE to
F
loat
.
MAX_VAL
U
E
where it remain
e
d
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan Saalfeld
alignM
u
ltiLayerMo
s
aic finally uses graph-base
d
pre
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Steph
a
n Saalfeld
c
h
anged defau
l
t
v
a
l
u
e of SIF
T
.
m
axOcta
v
eSize = 600
commit
|
commitdiff
|
tree
2010-01-29
Ste
p
han
S
aalf
e
l
d
fixed pairOverlapp
i
ngT
i
les( List
,
L
ist, List[]
)
commit
|
commitdiff
|
tree
2010-01-28
Ste
p
han
Saal
f
el
d
added c
o
rrespondence weight as a pa
r
am
e
ter
t
o Al
i
gn
.
.
.
commit
|
commitdiff
|
tree
2009-11-05
S
t
e
phan Saalf
e
ld
M
erge
bran
c
h 'master' into bunwa
r
pj
commit
|
commitdiff
|
tree
2009-11-04
Stepha
n
Saalfeld
Mer
g
e branch 'master' into bunw
a
r
pj
commit
|
commitdiff
|
tree
2009-11-03
S
tep
h
an
Saalfeld
Fixed Co
m
posi
t
eModes to wor
k
in th
e
fo
l
lowing co
n
figurations
commit
|
commitdiff
|
tree
2009-11-03
S
t
e
p
h
a
n Saalfe
l
d
Revert "Work around annoying b
u
g
in Graphics2D,
in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan Sa
a
lfe
l
d
Fixe
d
Composi
t
eMo
d
es to work in t
h
e following configuratio
n
s
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
Sepa
r
ating Alig
n
LayersTas
k
from AlignTask
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saa
l
feld
R
e
vert "Wor
k
a
r
o
und anno
y
ing bug in Graphics
2
D, in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
S
t
e
phan Saalfeld
Me
r
ge branch 'master'
into composite-m
o
des
commit
|
commitdiff
|
tree
2009-11-03
Stepha
n
S
aalf
e
ld
A
d
d
ARGBComp
o
site c
a
n handle i
m
age
w
i
t
h no alpha
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saa
l
f
e
l
d
Added
a
comm
e
nt i
n
Ali
g
n
commit
|
commitdiff
|
tree
2009-10-14
Ste
p
ha
n
Saalfeld
re
f
a
c
tored
a
misna
m
ed method
an
d
s
t
atified some par
a
mete
r
s in
commit
|
commitdiff
|
tree
2009-10-14
St
e
phan
S
aalfeld
synchron
i
zed
pote
n
tially conc
u
r
r
e
n
cy
u
nsafe match insertion
.
.
.
commit
|
commitdiff
|
tree
2009-10-13
Stephan Saalfeld
Fixed
the g
e
om
e
try issues and a
d
d
e
d supp
o
rt for
all
.
.
.
commit
|
commitdiff
|
tree
2009-10-09
S
t
e
phan Saalfe
l
d
Catch
i
ng
and handling Out
O
fMemo
r
yErro
r
s in Featu
r
e
E
xtraction
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
St
e
pha
n
Saalfeld
C
o
sm
e
t
i
cs in AlignTask
a
n
d
S
imilarityModel2D
commit
|
commitdiff
|
tree
2009-10-08
Steph
a
n Saalfeld
lens
c
orrection stops now later but latest after th
e
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Ste
p
han S
a
alfeld
M
er
g
e br
a
nch 'm
a
ster' of ssh://repo
.
or
.
c
z/sr
v
/g
i
t/
t
rakem2
commit
|
commitdiff
|
tree
2009-10-07
Stephan Saal
f
eld
Me
r
g
e branc
h
'master' of ssh:/
/
repo
.
or
.
cz/srv/git/tra
k
em2
commit
|
commitdiff
|
tree
2009-10-07
S
t
eph
a
n Saalfel
d
Fix
0
.
5
g
rey b
a
ckground f
o
r B
y
teProces
s
ors in
commit
|
commitdiff
|
tree
2009-09-24
S
t
epha
n
Saa
l
feld
Merge branc
h
'ma
s
ter' of ssh://r
e
po
.
or
.
c
z/sr
v
/g
i
t/tr
a
kem2
commit
|
commitdiff
|
tree
2009-09-23
Stephan Saalfeld
Saving
a
l
o
t of RAM in vi
s
u
a
li
z
ing the le
n
s
dis
t
ortion
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Stephan
S
aalfeld
Merge br
a
nch 'stack'
i
nto align
commit
|
commitdiff
|
tree
2009-09-17
Step
h
a
n Saalfeld
Hopefully fixed the scaling in Stack
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalfeld
Merg
e
branch 'stac
k
' in
t
o
align
commit
|
commitdiff
|
tree
2009-09-17
Ste
p
han Saa
l
feld
Me
r
ge branch '
s
tack' of s
s
h://repo
.
or
.
cz/srv
/
git/tr
a
kem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Step
h
an Saalfeld
Merge branch '
s
tack'
into
a
l
ign
commit
|
commitdiff
|
tree
2009-09-17
S
tephan
Saalfeld
s
e
p
a
r
a
ted the ac
t
ual
alignLayer
s
Linearly j
o
b from
the
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saa
l
feld
L
o
ade
r
uses d
b
_
l
ock
commit
|
commitdiff
|
tree
2009-09-16
Stephan
Saalfel
d
Me
r
ge branch 'align' of ssh://repo
.
or
.
cz/srv/git/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-16
Step
h
an Saalfeld
Fixe
d
a bug that prevented the
m
ulti-lay
e
r
m
o
s
ai
c
kin
g
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
Stephan Saalf
e
ld
M
e
rge b
r
an
c
h 'stack
'
o
f
ssh
:
//
r
e
p
o
.
or
.
cz/srv/g
i
t/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
Stephan
S
aalfe
l
d
a
very interme
d
iate commit th
a
t int
e
r
ru
p
ts m
e
at starting th
e
commit
|
commitdiff
|
tree
2009-09-11
S
t
ephan Saalfe
l
d
decaching was not
s
uccessful---truing another one
.
.
.
commit
|
commitdiff
|
tree
2009-09-11
Steph
a
n Saalfeld
Decache
processed
patches a
f
ter
a
pplication of the
CT
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan Saal
f
eld
Merge bran
c
h 'align' of s
s
h://repo
.
or
.
cz/srv/git/tra
k
em
2
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Step
h
an S
a
alfeld
Add
e
d a
d
e
form opt
i
on to th
e
multi-la
y
er-mo
s
aic
metho
d
.
commit
|
commitdiff
|
tree
2009-09-10
Stepha
n
Saalfeld
Added a deform option to the multi-la
y
e
r-mo
s
aic
m
ethod
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan Saalfeld
Added a conve
n
ience method to export a flat imag
e
for
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan Sa
a
lfeld
C
osm
e
ti
c
s (removed some n
o
n-req
u
ire
d
i
m
ports and empty
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
S
t
ephan Saal
f
eld
A a static method to get the bounding box of a coll
e
ction of
commit
|
commitdiff
|
tree
2009-09-02
St
e
phan
Saalfeld
*
Fixed wrong
blurring
commit
|
commitdiff
|
tree
2009-09-01
S
tepha
n
Saalfeld
ictSc
a
le wa
s
inverse
-
--anyway--
-
there are remaining
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
Stephan Sa
a
lf
e
l
d
Pseudo-fix
for locking iss
u
es
commit
|
commitdiff
|
tree
2009-09-01
S
t
e
p
han
S
a
alf
e
ld
C
r
eated the follow
i
ng ARGB
c
o
mposite mod
e
s for two
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
S
tephan Saal
f
eld
Removed
t
he broken
Ad
d
RGBCompos
i
te and a
d
ded a function
a
l
commit
|
commitdiff
|
tree
2009-08-31
Stephan Saalfeld
first
attempt to c
r
eate an ad
d
ing
C
ompositeContex
t
commit
|
commitdiff
|
tree
2009-08-31
S
teph
a
n Saalfeld
added tab for stack z-displayable
commit
|
commitdiff
|
tree
2009-08-31
Stephan Saa
l
feld
Stack assure
s
t
he correct smoothing
f
or t
h
e
scale introduced
.
.
.
commit
|
commitdiff
|
tree
2009-08-31
Step
h
a
n
Saal
f
e
l
d
AffineTransformMode no
t
i
f
ies all
affec
t
ed Displayabl
e
s
.
.
.
commit
|
commitdiff
|
tree
2009-08-31
Stephan Saalfeld
* Fixed
bounding
b
ox estimati
o
n
commit
|
commitdiff
|
tree
2009-08-30
Stephan Saalfe
l
d
* rem
o
ved non-required metho
d
s from patch
commit
|
commitdiff
|
tree
2009-08-30
St
e
phan Saalf
e
ld
consis
t
e
ntly
i
mplemented in
v
ertible
c
oordinatetra
n
sf
o
rms
.
.
.
commit
|
commitdiff
|
tree
2009-08-30
Stephan S
a
a
l
f
e
ld
Adde
d
Invertib
l
eCoordin
a
teTransformList
commit
|
commitdiff
|
tree
2009-08-30
St
e
phan Saalfeld
Invert
i
b
l
eCoordina
t
eTransform implements
Coordinate
T
ra
n
sform
.
.
.
commit
|
commitdiff
|
tree
2009-08-30
Stephan Saalf
e
ld
proper t
y
pe Coor
d
inateT
r
a
n
s
form
L
ist
.
clone()
commit
|
commitdiff
|
tree
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