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Move types/atoms.h to topology/
2014-05-24
T
eemu Murto
l
a
Move types/atoms
.
h
to topology/
commit
|
commitdiff
|
tree
2014-05-24
Teemu M
u
r
tola
Mov
e
typ
e
s/ish
i
ft
.
h to pbcutil/
commit
|
commitdiff
|
tree
2014-05-24
Teemu Murtol
a
Move invblock
.
*
to
t
opology/
commit
|
commitdiff
|
tree
2014-05-24
Teemu Murtola
Move types/blo
c
k
.
h to topology/
commit
|
commitdiff
|
tree
2014-05-24
Teemu Murt
o
la
Move s
y
m
tab
.
* to to
p
ology/
commit
|
commitdiff
|
tree
2014-05-24
T
eemu
M
u
r
t
ola
Merge t_sym
t
ab into s
y
mtab
.
h
commit
|
commitdiff
|
tree
2014-05-24
Teemu Murtola
Move pbc
.
* to p
b
cut
i
l
/
commit
|
commitdiff
|
tree
2014-05-22
Teemu Mu
r
tola
M
ove cinvsqrtdata
.
c to math/ and r
e
m
o
ve Fortran remn
a
nts
commit
|
commitdiff
|
tree
2014-05-22
Teemu Murt
o
la
Mer
g
e t
_
pb
c
d
efinit
i
on into pbc
.
h
commit
|
commitdiff
|
tree
2014-05-21
Teemu Murtol
a
M
ove mshif
t
.
* to pbcu
t
il/
commit
|
commitdiff
|
tree
2014-05-21
Teemu
M
urtola
Merge
t_graph de
f
inition into mshift
.
h
commit
|
commitdiff
|
tree
2014-05-20
Teemu Murtola
Mo
v
e
rmpbc
.
* to pbcutil/
commit
|
commitdiff
|
tree
2014-05-18
Teemu M
u
r
tola
C
l
ean
up
mat
i
o
.
*
commit
|
commitdiff
|
tree
2014-05-18
T
eemu Murtola
Move 3d
v
iew
.
*
t
o progra
m
s/vie
w
/
commit
|
commitdiff
|
tree
2014-05-18
Teemu Murtola
C
l
ean up math/
commit
|
commitdiff
|
tree
2014-05-17
T
e
e
mu Murtola
More el
a
bora
t
e default handling for F
i
le
N
ameOpti
o
n
commit
|
commitdiff
|
tree
2014-05-17
Te
e
mu
Murtola
Unit tests for pa
r
se_common_args() file opti
o
ns
commit
|
commitdiff
|
tree
2014-05-14
Teemu
M
u
rto
l
a
Move
p
hysics
.
* to
math/units
.
*
commit
|
commitdiff
|
tree
2014-05-01
T
e
em
u
Mur
t
o
l
a
F
ix in
c
orrect limits in
FloatOptionStorage
commit
|
commitdiff
|
tree
2014-04-28
Teemu
M
urtola
Move mtx
i
o
.
* to fileio/
commit
|
commitdiff
|
tree
2014-04-27
Teemu Murtola
Mov
e
rve
c
and friends
to math
/
vectypes
.
h
commit
|
commitdiff
|
tree
2014-04-27
Teemu Murtola
Move 'r
e
al'
d
efinition to ut
i
lity/real
.
h
commit
|
commitdiff
|
tree
2014-04-17
Teemu
M
urtola
Move vec
.
h t
o
math/
commit
|
commitdiff
|
tree
2014-04-16
T
e
emu Murtola
Remove unu
s
ed minvert
.
h
commit
|
commitdiff
|
tree
2014-04-16
Tee
m
u Murtola
Fix typo in fatalerror
.
h
commit
|
commitdiff
|
tree
2014-04-16
Teemu Mu
r
tola
M
ov
e
xvgr
.
* to file
i
o/
commit
|
commitdiff
|
tree
2014-04-16
T
eemu Murtola
Clea
n
up
x
vgr
.
h and viewit
.
h usag
e
commit
|
commitdiff
|
tree
2014-04-16
T
eemu
M
urtola
Remove
s
y
s
stuff
.
h
commit
|
commitdiff
|
tree
2014-04-16
Teemu Murtola
R
e
move sysstu
f
f
.
h
includes from
h
eaders
commit
|
commitdiff
|
tree
2014-04-16
Teemu Murtola
Refactor gmx_fatal
(
)
commit
|
commitdiff
|
tree
2014-04-13
Teemu Murtola
Remove unused shift
.
h
commit
|
commitdiff
|
tree
2014-04-13
Teemu Murtola
R
e
move
utility ->
fileio
depen
d
enc
i
es
commit
|
commitdiff
|
tree
2014-04-13
Tee
m
u Murtola
Clean up futil
.
*
commit
|
commitdiff
|
tree
2014-04-10
Te
e
mu Murtol
a
Clean
u
p and fix issues in
d
oc-check scripts
commit
|
commitdiff
|
tree
2014-04-10
Te
e
mu Murtola
Move par
t
of types/simple
.
h to
uti
l
i
ty
/
commit
|
commitdiff
|
tree
2014-04-10
Teemu
M
urtol
a
Remov
e
utility/
dependencies on net
w
ork
.
h
and main
.
h
commit
|
commitdiff
|
tree
2014-04-08
Teemu
M
urtola
Remove some utility -> legacyhea
d
ers dep
e
ndencies
commit
|
commitdiff
|
tree
2014-04-08
Teemu Murtola
Version bump
for post-5
.
0 development
commit
|
commitdiff
|
tree
2014-04-08
Teemu M
u
rtola
Move
gmx_fata
l
.
* t
o
utility/fatal
e
r
r
or
.
*
commit
|
commitdiff
|
tree
2014-04-07
T
e
em
u
Murtola
Doxygen documentati
o
n
for ver
s
ion
.
h
commit
|
commitdiff
|
tree
2014-04-04
Teemu Murtola
Rem
o
v
e ancie
n
t SGI-specific code
commit
|
commitdiff
|
tree
2014-04-04
Tee
m
u Murt
o
la
Clean
u
p gmx_fatal
.
*
commit
|
commitdiff
|
tree
2014-04-02
Teemu Murtola
Move string2
.
* to utility/cstringuti
l
.
*
commit
|
commitdiff
|
tree
2014-04-01
Teemu Murtola
Move smalloc
.
h
to
utilit
y
/
commit
|
commitdiff
|
tree
2014-03-31
Teemu Murtola
Remove #include <
.
.
.
>
f
or local files
i
n gm
x
-v
i
e
w
commit
|
commitdiff
|
tree
2014-03-31
Teemu Mu
r
tola
Cl
e
an up sma
l
l
o
c
.
h
commit
|
commitdiff
|
tree
2014-03-31
Teem
u
Murto
l
a
M
o
ve some mat
h
he
a
d
e
r
s a
w
ay
f
rom l
e
gacy
h
eaders/
commit
|
commitdiff
|
tree
2014-03-31
T
eemu Murtol
a
R
emove depen
d
en
c
y on commandl
i
ne/ from oenv
.
cpp
commit
|
commitdiff
|
tree
2014-03-30
Teem
u
Murtola
Clean up string2
.
h-relat
e
d in
c
ludes
commit
|
commitdiff
|
tree
2014-03-29
Tee
m
u Murtola
O
pt
i
mize i
n
termod
u
l
e
depe
n
d
encies
commit
|
commitdiff
|
tree
2014-03-29
Teemu
Murtola
Impro
v
e versio
n
informati
o
n
h
an
d
ling
commit
|
commitdiff
|
tree
2014-03-29
Teemu Mur
t
ola
Better include dependency graph generator
commit
|
commitdiff
|
tree
2014-03-27
T
e
emu Mu
r
tola
Move inc
l
u
d
e
depe
n
d
e
ncy checks
t
o
doc-check
commit
|
commitdiff
|
tree
2014-03-27
Te
e
mu Mur
t
o
l
a
Better automated Doxyg
e
n docume
n
t
ation checke
r
commit
|
commitdiff
|
tree
2014-03-27
Teemu Mu
r
tola
Misc
.
Doxygen fixes
commit
|
commitdiff
|
tree
2014-03-27
T
e
e
mu Murtola
Move
thread_
m
pi to src/e
x
ternal/
commit
|
commitdiff
|
tree
2014-03-24
Teemu Murtola
Remove gmxpreproce
s
s from includ
e
path
commit
|
commitdiff
|
tree
2014-03-18
T
ee
m
u Murtola
Remove interactiv
e
help f
r
om core selectio
n
pa
r
ser
commit
|
commitdiff
|
tree
2014-03-18
Teemu
M
ur
t
ola
Im
p
rove int
e
ract
i
ve
se
l
e
c
tio
n
input
commit
|
commitdiff
|
tree
2014-03-17
Teemu
Murto
l
a
U
pdate manual
a
nalysis secti
o
n
commit
|
commitdiff
|
tree
2014-03-11
Teemu Murtol
a
Fix
m
isc
.
D
o
x
y
gen issues
commit
|
commitdiff
|
tree
2014-03-08
Teemu Murtola
Re
m
ove som
e
unnece
s
sary decl
a
ratio
n
s
commit
|
commitdiff
|
tree
2014-03-02
Teemu Mu
r
t
o
la
Fix incorrec
t
grid cel
l
size in
g_sas -nopbc
commit
|
commitdiff
|
tree
2014-03-01
Teemu Mur
t
ola
Move
d
efault library path
s
earch to p
r
ogram
c
ontext
commit
|
commitdiff
|
tree
2014-02-28
Tee
m
u Murt
o
la
Residual SIM
D
Doxyg
e
n imp
r
ov
e
m
ents
commit
|
commitdiff
|
tree
2014-02-28
Teemu
M
u
rtola
Misc
.
D
o
xy
g
en configuration chan
g
e
s
commit
|
commitdiff
|
tree
2014-02-28
Teemu Murtola
Convert
g
mx-sas to
t
he C++
f
ramework
commit
|
commitdiff
|
tree
2014-02-28
Teemu Murt
o
la
Add support f
o
r
non-unifor
m
X
axis in array data
commit
|
commitdiff
|
tree
2014-02-27
Teemu Mur
t
ol
a
Improve
s
upp
o
rt for da
t
a sets i
n
C++ tools
commit
|
commitdiff
|
tree
2014-02-27
Teemu
M
u
r
t
ola
Improve
floating po
i
n
t
c
omparisons in unit
t
es
t
s
commit
|
commitdiff
|
tree
2014-02-26
Teemu Mu
r
tola
Misc
.
Doxygen
bui
l
d
s
ystem improvements
commit
|
commitdiff
|
tree
2014-02-26
Teemu
Mu
r
tola
F
i
x GMX_PRIu32 and G
M
X
_PRIu64 for MSVC
commit
|
commitdiff
|
tree
2014-02-20
T
ee
m
u Murtola
Add do
c
u
mentation
f
or u
s
ing Doxyge
n
commit
|
commitdiff
|
tree
2014-02-16
Teemu Murtola
Improve man page format
t
ing slightl
y
commit
|
commitdiff
|
tree
2014-02-16
Teemu Murtola
Fix de
f
ault enum va
l
ues in help output
commit
|
commitdiff
|
tree
2014-02-15
T
e
e
mu Murt
o
l
a
Fix some
broken link
s
i
n
HTML page
s
commit
|
commitdiff
|
tree
2014-02-09
Teemu
Mu
r
tola
Shell
c
ompleti
o
ns
throug
h
O
p
tions
commit
|
commitdiff
|
tree
2014-02-09
T
eemu Murtola
M
ake 'gmx -h' invariant
wrt
.
prov
i
ded
options
commit
|
commitdiff
|
tree
2014-02-09
Teemu Murtola
Remove
old
h
e
l
p
f
o
rm
a
tt
i
ng
code
commit
|
commitdiff
|
tree
2014-02-09
Teemu Murto
l
a
Make Fil
e
N
ameOption behave more li
k
e o
l
d
f
i
l
enm parser
commit
|
commitdiff
|
tree
2014-02-09
T
eemu Murtola
I
mplement synopsis
for he
l
p outp
u
t
commit
|
commitdiff
|
tree
2014-02-09
Teemu Murt
o
la
Refactor new help forma
t
ting implementation
commit
|
commitdiff
|
tree
2014-02-08
Tee
m
u M
u
rtola
Fix &
upd
a
te docs for GM
X
_TEST_OPTIONS
commit
|
commitdiff
|
tree
2014-02-06
Teem
u
Murtola
Fix build of sh
a
r
e/templat
e
when insta
l
l
ed
commit
|
commitdiff
|
tree
2014-02-03
Tee
m
u
M
urtola
M
e
rge
"Mer
g
e
release-4-6 into mast
e
r
"
commit
|
commitdiff
|
tree
2014-02-03
T
eemu
M
urtola
Opti
m
ize Doxygen build
commit
|
commitdiff
|
tree
2014-02-02
Teemu Mur
t
ol
a
Fix segfaul
t
i
n
'gmx -h'
commit
|
commitdiff
|
tree
2014-02-02
T
e
emu Murtola
Get rid
o
f src/programs/gmx/
commit
|
commitdiff
|
tree
2014-02-02
Teemu Mur
t
ola
Simplify
O
p
tions::setD
e
s
c
ription() usage
commit
|
commitdiff
|
tree
2014-02-02
Teemu Mu
r
tola
Extend val
g
rind s
u
ppr
e
ssions for O
p
enMPI
commit
|
commitdiff
|
tree
2014-02-01
T
e
emu Murtola
Fix some
i
s
s
ues reported by
'make depcheck doc
c
heck'
commit
|
commitdiff
|
tree
2014-01-31
Teemu M
u
rtola
Overview docs for unit
t
esting
commit
|
commitdiff
|
tree
2014-01-30
Teemu Mu
r
tola
Fix shell completions of ffMULT opti
o
n
s
commit
|
commitdiff
|
tree
2014-01-30
Te
e
mu Murto
l
a
Overview docs
for wra
p
per binary implementation
commit
|
commitdiff
|
tree
2014-01-30
Teemu Murtol
a
Overview docs fo
r
us
i
ng Gromacs
as a lib
r
ary
commit
|
commitdiff
|
tree
2014-01-30
T
eem
u
Mu
r
t
o
la
Rename ProgramInfo to
C
o
m
mandLineProgramContex
t
commit
|
commitdiff
|
tree
2014-01-30
T
eemu Murtola
R
e
factor Pro
g
ra
m
Inf
o
use
commit
|
commitdiff
|
tree
2014-01-30
T
e
emu Murtol
a
M
ove command listing to 'gmx help
c
o
m
mands'
commit
|
commitdiff
|
tree
2014-01-29
Teemu Murtola
F
i
xes to fi
l
ename shell
com
p
letions
commit
|
commitdiff
|
tree
2014-01-29
Teemu
M
ur
t
ola
Print common options
to 'gmx -h'
commit
|
commitdiff
|
tree
next