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2016-03-12	Mark Abraham	Update use of isnan in linearalgebra	commit \| commitdiff \| tree
2016-03-12	Mark Abraham	Find hwloc quietly if it's already been found	commit \| commitdiff \| tree
2016-03-12	Berk Hess	Split off Fermi kernel from CUDA kernel	commit \| commitdiff \| tree
2016-03-11	Roland Schulz	Fix MPI_IN_PLACE test	commit \| commitdiff \| tree
2016-03-11	Mark Abraham	Add infrastructure for tests to compare mdruns	commit \| commitdiff \| tree
2016-03-09	Erik Lindahl	Random engines & distributions as proper C++11 classes	commit \| commitdiff \| tree
2016-03-09	Erik Lindahl	Support for portable hardware locality (hwloc)	commit \| commitdiff \| tree
2016-03-04	Berk Hess	Converted csettle() to use real/SimdReal template	commit \| commitdiff \| tree
2016-03-04	Erik Lindahl	Fix length of SIMD4 boolean vector in reference build	commit \| commitdiff \| tree
2016-03-04	John Eblen	Minor corrections to license file COPYING	commit \| commitdiff \| tree
2016-03-03	Berk Hess	Use rvec4 for listed force buffer	commit \| commitdiff \| tree
2016-02-27	Berk Hess	Minor code reordering in GPU kernels	commit \| commitdiff \| tree
2016-02-26	Szilárd Páll	Fix leftover load() calls in the simd util headers	commit \| commitdiff \| tree
2016-02-26	Berk Hess	Fix compilation with Simd4Float, without Simd4Double	commit \| commitdiff \| tree
2016-02-26	Mark Abraham	Separated test of CDATA end tag handling from others	commit \| commitdiff \| tree
2016-02-22	Mark Abraham	Move init of specialized dynamical algorithms to do_md	commit \| commitdiff \| tree
2016-02-21	Mark Abraham	Separate table construction	commit \| commitdiff \| tree
2016-02-19	Gerrit Code Review	Merge "Merge branch release-5-1"	commit \| commitdiff \| tree
2016-02-19	Szilárd Páll	Fix OpenCL table interpolations of Ewald correction	commit \| commitdiff \| tree
2016-02-19	Mark Abraham	Make both ftp and http links for source download	commit \| commitdiff \| tree
2016-02-19	Berk Hess	Fix excessive list splitting	commit \| commitdiff \| tree
2016-02-19	John Eblen	Fix compiler warnings with ICC	commit \| commitdiff \| tree
2016-02-18	Carsten Kutzner	Small update to reference manual	commit \| commitdiff \| tree
2016-02-18	Mark Abraham	Updated reference manual text about PME tuning	commit \| commitdiff \| tree
2016-02-16	Viveca Lindahl	Replaced pull-print-com1,2 mdp option with pull-print...	commit \| commitdiff \| tree
2016-02-16	Alexey Shvetsov	Make GROMACS compile again on XeonPhi	commit \| commitdiff \| tree
2016-02-12	Erik Lindahl	Extended SIMD, implementation for AVX-512F/ER	commit \| commitdiff \| tree
2016-02-11	Berk Hess	Add SIMD version of pbc_dx_aiuc	commit \| commitdiff \| tree
2016-02-10	Mark Abraham	Improved update_coords handling of xprime	commit \| commitdiff \| tree
2016-02-10	Mark Abraham	Fix issues to update cppcheck support to 1.72	commit \| commitdiff \| tree
2016-02-09	Berk Hess	Replaced nbnxn search+grid simd macros	commit \| commitdiff \| tree
2016-02-09	Gerrit Code Review	Merge "Merge branch release-5-1"	commit \| commitdiff \| tree
2016-02-08	Szilárd Páll	Handle uniformly GMX_OCL_NOGENCACHE	commit \| commitdiff \| tree
2016-02-07	Berk Hess	Fix incorrect cmap parsing	commit \| commitdiff \| tree
2016-02-03	Berk Hess	Replaced literals in nbnxn lists by ints	commit \| commitdiff \| tree
2016-02-03	Berk Hess	Fix mdrun removing Verlet buffer with EM	commit \| commitdiff \| tree
2016-02-03	Mark Abraham	Fix grompp not warning when .mdp values have wrong...	commit \| commitdiff \| tree
2016-02-03	Berk Hess	Fix SETTLE error handling	commit \| commitdiff \| tree
2016-02-03	Mark Abraham	Fix dEkin/dl handling with multiple ranks	commit \| commitdiff \| tree
2016-02-02	Viveca Lindahl	Added pull potential flat-bottom-high	commit \| commitdiff \| tree
2016-02-01	Gerrit Code Review	Merge "Merge branch release-5-1"	commit \| commitdiff \| tree
2016-02-01	Teemu Murtola	Handle pdbinfo in AtomsBuilder	commit \| commitdiff \| tree
2016-01-29	Berk Hess	Add check for double perturbation	commit \| commitdiff \| tree
2016-01-29	Berk Hess	Fix LINCS triangle constraint thread issue	commit \| commitdiff \| tree
2016-01-28	Mark Abraham	Fix use of __APPLE__ in OpenCL code	commit \| commitdiff \| tree
2016-01-28	Teemu Murtola	Update build scripts to releng changes	commit \| commitdiff \| tree
2016-01-28	Gerrit Code Review	Merge "Merge branch release-5-1"	commit \| commitdiff \| tree
2016-01-28	Mark Abraham	Add OpenCL source file types to copyright checker	commit \| commitdiff \| tree
2016-01-28	Berk Hess	Update pair-list buffer manual	commit \| commitdiff \| tree
2016-01-28	Vedran Miletić	OpenCL: use new defines (_POW2_EXPONENT -> _LOG2)	commit \| commitdiff \| tree
2016-01-27	Mark Abraham	Add suggestions for updating binutils	commit \| commitdiff \| tree
2016-01-26	Szilárd Páll	GPU code reorganization and tweaks	commit \| commitdiff \| tree
2016-01-24	Mark Abraham	Fix duplicate LaTeX equation label	commit \| commitdiff \| tree
2016-01-24	Berk Hess	Fix exact continuation from non-energy steps	commit \| commitdiff \| tree
2016-01-24	Berk Hess	Fix energy file continuation with md-vv	commit \| commitdiff \| tree
2016-01-24	Mark Abraham	Update references to HTML and online documentation	commit \| commitdiff \| tree
2016-01-24	Teemu Murtola	Document limitations on 32-bit Linux	commit \| commitdiff \| tree
2016-01-24	Berk Hess	Fix energy average with continuation	commit \| commitdiff \| tree
2016-01-14	Mark Abraham	Permit customized testing of grompp and mdrun	commit \| commitdiff \| tree
2016-01-13	Mark Abraham	Allowed NVML support to be toggled	commit \| commitdiff \| tree
2016-01-12	Teemu Murtola	Make GMX_MPI always defined to 0/1	commit \| commitdiff \| tree
2016-01-12	Teemu Murtola	Support passing tarball MD5 for webpage build	commit \| commitdiff \| tree
2016-01-12	Teemu Murtola	Remove vmdplugin from t_trxframe	commit \| commitdiff \| tree
2016-01-11	Teemu Murtola	Convert more config.h defines to 0/1	commit \| commitdiff \| tree
2016-01-11	Mark Abraham	Improved update_coords	commit \| commitdiff \| tree
2016-01-10	Teemu Murtola	Support arbitrary subset trajectories in poscalc.*	commit \| commitdiff \| tree
2016-01-10	Teemu Murtola	Make file names in fatal error messages more robust	commit \| commitdiff \| tree
2016-01-10	Teemu Murtola	Convert some config.h macros to use 0/1	commit \| commitdiff \| tree
2016-01-09	Szilárd Páll	split NBNXN CUDA kernels into four compilation units	commit \| commitdiff \| tree
2016-01-08	Berk Hess	Fix PME load balancing skipping a setup	commit \| commitdiff \| tree
2016-01-08	Mark Abraham	Improve tpr header version handling	commit \| commitdiff \| tree
2016-01-07	Mark Abraham	Document how potential-switch works	commit \| commitdiff \| tree
2016-01-07	Mark Abraham	Remove SD2 integrator	commit \| commitdiff \| tree
2016-01-07	David van der Spoel	Made normal modes work with shells and vsites	commit \| commitdiff \| tree
2016-01-07	Michael Shirts	Fixes two problems related to restarts for vv.	commit \| commitdiff \| tree
2016-01-05	Teemu Murtola	Update packaging build	commit \| commitdiff \| tree
2016-01-05	Mark Abraham	Fix logic for DD missing-interactions check	commit \| commitdiff \| tree
2016-01-05	Mark Abraham	Use EXPECT_TRUE and EXPECT_FALSE in new SIMD tests	commit \| commitdiff \| tree
2016-01-04	Erik Lindahl	Fix unnecessary SIMD warning	commit \| commitdiff \| tree
2016-01-04	Mark Abraham	Change GMX_DOUBLE to be always defined	commit \| commitdiff \| tree
2016-01-01	Szilard Pall	Fix xlc+CUDA workaround in gmxManageNvccConfig	commit \| commitdiff \| tree
2015-12-29	Teemu Murtola	Reduce inputrec.h dependencies	commit \| commitdiff \| tree
2015-12-28	Mark Abraham	Create invertmatrix.h	commit \| commitdiff \| tree
2015-12-27	Erik Lindahl	Extended SIMD, implementation for Intel MIC	commit \| commitdiff \| tree
2015-12-27	Teemu Murtola	Improve text writing in help output	commit \| commitdiff \| tree
2015-12-27	Roland Schulz	Fix G++ 4.7.0	commit \| commitdiff \| tree
2015-12-27	Teemu Murtola	Source packaging with new releng	commit \| commitdiff \| tree
2015-12-27	Teemu Murtola	Further vec.h cleanup	commit \| commitdiff \| tree
2015-12-27	Erik Lindahl	Avoid using aligned member variables in SIMD tests	commit \| commitdiff \| tree
2015-12-26	Szilard Pall	Improve documentation on OpenCL issue with NVIDIA	commit \| commitdiff \| tree
2015-12-26	Teemu Murtola	Clean up vec.h	commit \| commitdiff \| tree
2015-12-24	Mark Abraham	Moved responsibility for f_global	commit \| commitdiff \| tree
2015-12-24	Erik Lindahl	Extended SIMD, impl for Arm Neon and 64-bit Neon Asimd	commit \| commitdiff \| tree
2015-12-24	Teemu Murtola	Add functionality to TextWriter	commit \| commitdiff \| tree
2015-12-20	Erik Lindahl	Next-generation SIMD, for SSE2, SSE4.1 and 128-bit AVX	commit \| commitdiff \| tree
2015-12-20	Teemu Murtola	Fix most warnings with Doxygen 1.8.10	commit \| commitdiff \| tree
2015-12-19	Erik Lindahl	Fix compiler warning in cpuinfo for non-x86 architectures	commit \| commitdiff \| tree
2015-12-19	Teemu Murtola	Update versioning for new scheme	commit \| commitdiff \| tree
2015-12-16	Teemu Murtola	Move calcgrid.* to fft/	commit \| commitdiff \| tree
2015-12-15	Teemu Murtola	Move gpu_utils etc. out of gmxlib	commit \| commitdiff \| tree
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