Fix most warnings with Doxygen 1.8.10
commit42dc4398d39871313107a8d369a548c4a4edbeef
authorTeemu Murtola <teemu.murtola@gmail.com>
Fri, 18 Dec 2015 19:56:34 +0000 (18 21:56 +0200)
committerGerrit Code Review <gerrit@gerrit.gromacs.org>
Sun, 20 Dec 2015 12:15:50 +0000 (20 13:15 +0100)
tree5caad12b0514a2ad32a15b5d0a370e20a7376be3
parent615fd567c858a2a9f9d3dd39d8752ad0c553dc66
Fix most warnings with Doxygen 1.8.10

- Fix several \copydoc uses.
- Work around problems where inherited virtual functions within
  templates did not get documentation from their parent (this used to
  work with Doxygen 1.8.5).
- Doxygen now writes relative paths to xml output, so adjust the Python
  scripts used to parse them to accept both.

Change-Id: I56ca8d6af44e042f96bf2cb0efc923ca9ebac8df
docs/doxygen/doxygenxml.py
docs/doxygen/gmxtree.py
src/gromacs/mdlib/integrator.h
src/gromacs/mdlib/minimize.cpp
src/gromacs/onlinehelp/helptopic.h
src/gromacs/options/optionstoragetemplate.h
src/gromacs/selection/tests/selectioncollection.cpp
src/gromacs/simd/simd.h
src/gromacs/trajectoryanalysis/analysissettings.h
src/gromacs/utility/filestream.h