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2019-09-05	Mark Abraham	Update mdrun test comparison infrastructure	commit \| commitdiff \| tree
2019-09-05	Pascal Merz	Rename MicroState to StatePropagatorData for modular...	commit \| commitdiff \| tree
2019-09-05	Christian Blau	Add reference density file option to densityfitting	commit \| commitdiff \| tree
2019-09-05	Berk Hess	Split off getting of the DD setup	commit \| commitdiff \| tree
2019-09-04	Szilárd Páll	Bump ARM HPC toolchain in post-submit to v19.3	commit \| commitdiff \| tree
2019-09-04	Szilárd Páll	Add back a clang-tidy exception	commit \| commitdiff \| tree
2019-09-04	Christian Blau	Read mrc file using file name	commit \| commitdiff \| tree
2019-09-04	Berk Hess	Move update grouping to DDSystemInfo	commit \| commitdiff \| tree
2019-09-04	Magnus Lundborg	Inline functions of calculations of FE interaction...	commit \| commitdiff \| tree
2019-09-04	Berk Hess	Change DD pme force buffer to std::vector	commit \| commitdiff \| tree
2019-09-04	Berk Hess	Initialize all members of gmx_domdec_t	commit \| commitdiff \| tree
2019-09-03	M. Eric Irrgang	Python wrapping code for gmxapi mdrun bindings.	commit \| commitdiff \| tree
2019-09-03	Pascal Merz	Introduce energy element for modular simulator	commit \| commitdiff \| tree
2019-09-03	Mark Abraham	Simplify energy-file comparisons in tests	commit \| commitdiff \| tree
2019-09-03	Artem Zhmurov	Add Parrinello-Rahman pressure coupling to CUDA Leap...	commit \| commitdiff \| tree
2019-09-02	Berk Hess	Only use fshift when needed	commit \| commitdiff \| tree
2019-09-01	Christian Blau	Add checkpointing for MdModules	commit \| commitdiff \| tree
2019-08-30	Christian Blau	LocalAtomSet construction with vectors of gmx::index	commit \| commitdiff \| tree
2019-08-30	M. Eric Irrgang	Import base code for Python-driven simulation from...	commit \| commitdiff \| tree
2019-08-30	Magnus Lundborg	Changed some variables from SCReal to real in FE kernel.	commit \| commitdiff \| tree
2019-08-30	Christian Blau	Implementing the density fitting force provider	commit \| commitdiff \| tree
2019-08-29	Mark Abraham	More quotes	commit \| commitdiff \| tree
2019-08-28	Pascal Merz	Introduce signallers for modular integrator	commit \| commitdiff \| tree
2019-08-28	Paul Bauer	Fix return value	commit \| commitdiff \| tree
2019-08-28	Mark Abraham	Fix integration issues	commit \| commitdiff \| tree
2019-08-28	Pascal Merz	Introduce the main modular simulator interfaces and...	commit \| commitdiff \| tree
2019-08-28	Paul Bauer	Change tolerance for normal mode tests	commit \| commitdiff \| tree
2019-08-28	Szilárd Páll	Add clang-tidy nightly test with SIMD + OpenCL	commit \| commitdiff \| tree
2019-08-28	Szilárd Páll	Move nonbonded GPU wait timing into the GPU module	commit \| commitdiff \| tree
2019-08-27	Mark Abraham	Add integration tests for exact restarts	commit \| commitdiff \| tree
2019-08-27	Christian Blau	Add density fitting parameters	commit \| commitdiff \| tree
2019-08-27	Christian Blau	Access to GaussTransform3D data	commit \| commitdiff \| tree
2019-08-27	Christian Blau	Add index group option to density fitting	commit \| commitdiff \| tree
2019-08-26	Paul Bauer	Remove section checking api level	commit \| commitdiff \| tree
2019-08-26	Paul Bauer	Remove installed headers from CMake	commit \| commitdiff \| tree
2019-08-26	Artem Zhmurov	Add temperature coupling to CUDA Leap-Frog integrator	commit \| commitdiff \| tree
2019-08-26	M. Eric Irrgang	Move gmxapicompat TPR tools to libgmxapi.	commit \| commitdiff \| tree
2019-08-26	M. Eric Irrgang	Reduce artificial header dependencies in restraint...	commit \| commitdiff \| tree
2019-08-26	Christian Blau	Activation of density fitting and move of module notifications	commit \| commitdiff \| tree
2019-08-25	Szilárd Páll	clang-tidy 8 fixes for the GPU host code-path	commit \| commitdiff \| tree
2019-08-25	Szilárd Páll	Further fixes for clang-tidy clang version 8	commit \| commitdiff \| tree
2019-08-23	Paul Bauer	Removes checker for installed files	commit \| commitdiff \| tree
2019-08-23	Szilárd Páll	Fix clang-tidy warnings in the OpenCL build	commit \| commitdiff \| tree
2019-08-23	Mark Abraham	Update clang-tidy to clang version 8	commit \| commitdiff \| tree
2019-08-22	Mark Abraham	Merge branch release-2019	commit \| commitdiff \| tree
2019-08-22	Mark Abraham	Improve clang-analyzer build time	commit \| commitdiff \| tree
2019-08-22	M. Eric Irrgang	C++ code and Python bindings for TPR parameter read...	commit \| commitdiff \| tree
2019-08-22	Berk Hess	Fix perturbed bonded bug	commit \| commitdiff \| tree
2019-08-21	M. Eric Irrgang	Enable GMXAPI by default.	commit \| commitdiff \| tree
2019-08-20	Berk Hess	Merge two dihedral functions	commit \| commitdiff \| tree
2019-08-20	Berk Hess	Use shiftForces in ForceOuputs	commit \| commitdiff \| tree
2019-08-20	Erik Lindahl	Avoid using GMX_SIMD macros to detect _mm_pause()	commit \| commitdiff \| tree
2019-08-20	Mark Abraham	Fix issues for clang-analyzer-8	commit \| commitdiff \| tree
2019-08-20	Berk Hess	Make bonded virial computation conditional	commit \| commitdiff \| tree
2019-08-19	Szilárd Páll	Switch to ARM HPC toolchain v19.2 in post-submit	commit \| commitdiff \| tree
2019-08-19	Mark Abraham	Modernize t_matrix, t_mapping, t_rgb	commit \| commitdiff \| tree
2019-08-19	Mark Abraham	Modernize t_psdata	commit \| commitdiff \| tree
2019-08-19	Szilárd Páll	Work around clang CUDA device code codegen bug	commit \| commitdiff \| tree
2019-08-16	Szilárd Páll	Fix sim_util.cpp copyright header	commit \| commitdiff \| tree
2019-08-16	Mark Abraham	Update testing matrices and fix warnings	commit \| commitdiff \| tree
2019-08-16	Mark Abraham	Stop nbnxm/grid.h depending on SIMD module	commit \| commitdiff \| tree
2019-08-15	Szilárd Páll	Fix OpenCL gather reduction	commit \| commitdiff \| tree
2019-08-14	Christian Blau	Info class to name and generate the densityfitting...	commit \| commitdiff \| tree
2019-08-14	Mark Abraham	Fix vv integrators	commit \| commitdiff \| tree
2019-08-14	M. Eric Irrgang	Add initial .clang-format file.	commit \| commitdiff \| tree
2019-08-13	Mark Abraham	Fix icc 19 codegen issue	commit \| commitdiff \| tree
2019-08-12	M. Eric Irrgang	Introduce Context requirement.	commit \| commitdiff \| tree
2019-08-12	Mark Abraham	Quiet warning	commit \| commitdiff \| tree
2019-08-12	Mark Abraham	Fix ocl_kernel target	commit \| commitdiff \| tree
2019-08-12	Pascal Merz	Use new setenv function for energyoutput test	commit \| commitdiff \| tree
2019-08-12	M. Eric Irrgang	Separate out some abstract base classes.	commit \| commitdiff \| tree
2019-08-09	Artem Zhmurov	Prepare Update and Constraints for Domain Decomposition	commit \| commitdiff \| tree
2019-08-09	Artem Zhmurov	Refactoring of the SETTLE tests	commit \| commitdiff \| tree
2019-08-09	Berk Hess	SIMD acceleration for F_FOURDIHS and F_PIDIHS	commit \| commitdiff \| tree
2019-08-08	Mark Abraham	Fix estimate of the size of a j list	commit \| commitdiff \| tree
2019-08-08	M. Eric Irrgang	Add gmxapi_pytest custom target to CMake `check` target.	commit \| commitdiff \| tree
2019-08-08	M. Eric Irrgang	Allow gmxapi Python package tests to be run from GROMACS...	commit \| commitdiff \| tree
2019-08-08	Christian Blau	Harmonize mrc density format extents with rest of code.	commit \| commitdiff \| tree
2019-08-08	M. Eric Irrgang	Reenable gtest_main target.	commit \| commitdiff \| tree
2019-08-08	Mark Abraham	Stop testing ICC on Windows	commit \| commitdiff \| tree
2019-08-08	Artem Zhmurov	Refactor Leap-Frog tests and connect them to CPU version	commit \| commitdiff \| tree
2019-08-07	M. Eric Irrgang	Use gmock and gtest targets from googletest-release...	commit \| commitdiff \| tree
2019-08-05	Pascal Merz	Move ownership of kinetic energy object to ISimulator	commit \| commitdiff \| tree
2019-08-05	Pascal Merz	Added Simulator comparison test	commit \| commitdiff \| tree
2019-08-05	Mark Abraham	Remove libgromacs_generated contributions from FindCUDA...	commit \| commitdiff \| tree
2019-08-02	yongwangCPH	Solve issue with demux.pl	commit \| commitdiff \| tree
2019-08-01	Berk Hess	Remove a pointer in t_forcerec	commit \| commitdiff \| tree
2019-08-01	Berk Hess	Fix nbnxm GPU memory reservation issue	commit \| commitdiff \| tree
2019-08-01	Mark Abraham	Manage compiler flags and some include options per...	commit \| commitdiff \| tree
2019-08-01	Mark Abraham	Improve use of object libraries in libgromacs	commit \| commitdiff \| tree
2019-08-01	Mark Abraham	Merge "Merge release-2019 into master"	commit \| commitdiff \| tree
2019-07-31	Berk Hess	Add grompp warning with use of GROMOS FF	commit \| commitdiff \| tree
2019-07-31	Artem Zhmurov	Introduce function that checks if the computations...	commit \| commitdiff \| tree
2019-07-31	Szilárd Páll	Fixes for F buffer ops change	commit \| commitdiff \| tree
2019-07-31	Berk Hess	Remove need for GROMOS FF in test	commit \| commitdiff \| tree
2019-07-31	Pascal Merz	Rename Simulator to LegacySimulator	commit \| commitdiff \| tree
2019-07-31	Szilárd Páll	Move cycle counting into the GPU bonded module	commit \| commitdiff \| tree
2019-07-31	Szilárd Páll	Report when development feature flags are used	commit \| commitdiff \| tree
2019-07-31	Szilárd Páll	Move end of step GPU task launches to a function	commit \| commitdiff \| tree
2019-07-30	Paul Bauer	Add wrapper for outputadapter methods	commit \| commitdiff \| tree
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