| 2011-07-06 |
Chris Fields | speelink fixes, patch courtesy Charles Plessy, fixes...
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commit | commitdiff | tree |
| 2011-07-06 |
Chris Fields | add --install_scripts option for Build.PL, patch courtesy...
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commit | commitdiff | tree |
| 2011-06-29 |
Chris Fields | Merge pull request #2 from chadadavis/skip-na-tests
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commit | commitdiff | tree |
| 2011-05-19 |
Chris Fields | this module requires Config::Any; skip these tests...
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commit | commitdiff | tree |
| 2011-05-19 |
Chris Fields | this module requires Config::Any; skip these tests...
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commit | commitdiff | tree |
| 2011-05-19 |
Chris Fields | don't call executable()
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commit | commitdiff | tree |
| 2011-04-21 |
Chris Fields | skip # off
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commit | commitdiff | tree |
| 2011-04-21 |
Chris Fields | hack in a workaround for version(), which conflicts...
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commit | commitdiff | tree |
| 2011-04-21 |
Chris Fields | passthrough Makefile is deprecated; add BEDTools dependency
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commit | commitdiff | tree |
| 2011-04-21 |
Chris Fields | a few last additions
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commit | commitdiff | tree |
| 2011-04-20 |
Chris Fields | some more Changes
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commit | commitdiff | tree |
| 2011-04-20 |
Chris Fields | some initial Changes stuff, getting ready for a run...
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commit | commitdiff | tree |
| 2011-04-20 |
Chris Fields | add comment on the required BLAST+ version, refs #3213
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commit | commitdiff | tree |
| 2011-04-20 |
Chris Fields | get SABlast tests passing with v 2.2.24+ and up
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commit | commitdiff | tree |
| 2011-04-20 |
Chris Fields | fix hit count to go with database change, tests pass...
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commit | commitdiff | tree |
| 2011-04-20 |
Chris Fields | get BLAST+ tests to actually finish w/o a crash using...
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commit | commitdiff | tree |
| 2011-04-20 |
Chris Fields | BLAST+ tests passing so far, refs #3213
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commit | commitdiff | tree |
| 2011-04-20 |
Chris Fields | changes to deal with indexing of FASTA with dup ID...
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commit | commitdiff | tree |
| 2011-04-14 |
Chris Fields | get MAFFT working
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commit | commitdiff | tree |
| 2011-04-14 |
Chris Fields | latest samtools needs a sorted BAM for indexing
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commit | commitdiff | tree |
| 2011-04-14 |
Chris Fields | update for EMBOSS 6.2.0
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commit | commitdiff | tree |
| 2011-04-04 |
Chris Fields | Revert "test hook from run (issue might be CGI params)"
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commit | commitdiff | tree |
| 2011-04-04 |
Chris Fields | test hook from run (issue might be CGI params)
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commit | commitdiff | tree |
| 2010-11-05 |
Chris Fields | simplify some bits, pass on query/target types to the...
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commit | commitdiff | tree |
| 2010-11-05 |
Chris Fields | remove cruft, gunge, and implement searchio()
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commit | commitdiff | tree |
| 2010-11-05 |
Chris Fields | allow other SearchIO formats and parameters (though...
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commit | commitdiff | tree |
| 2010-11-05 |
Chris Fields | tests for regions, require a .2bit database so only...
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commit | commitdiff | tree |
| 2010-11-05 |
Chris Fields | add an uppercase alias for db, tests pass
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commit | commitdiff | tree |
| 2010-11-05 |
Chris Fields | initial checkin of revamped Blat wrapper
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commit | commitdiff | tree |
| 2010-08-05 |
Chris Fields | [bug 2987] remove warning (patch courtesy Adam Witney
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commit | commitdiff | tree |
| 2010-07-23 |
Chris Fields | Revert "add dots param"
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commit | commitdiff | tree |
| 2010-07-23 |
Chris Fields | add dots param
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commit | commitdiff | tree |
| 2010-07-23 |
Chris Fields | [RT 58464] patching to allow file names with spaces
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commit | commitdiff | tree |
| 2010-07-05 |
Chris Fields | small fixes, but the previous code does work when setting...
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commit | commitdiff | tree |
| 2010-07-04 |
Chris Fields | spelling
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commit | commitdiff | tree |
| 2010-07-01 |
Chris Fields | move tests over to tempfile use (tmpdir not being cleaned up)
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commit | commitdiff | tree |
| 2010-07-01 |
Chris Fields | move to tempfiles for cleanup
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commit | commitdiff | tree |
| 2010-07-01 |
Chris Fields | algorithm can be SSEARCH as well; use test_output_file...
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commit | commitdiff | tree |
| 2010-07-01 |
Chris Fields | contigs off with Ubuntu packaged MAQ
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commit | commitdiff | tree |
| 2010-06-30 |
Chris Fields | no_sequences -> num_sequences
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commit | commitdiff | tree |
| 2010-06-30 |
Chris Fields | some tweaks to get rid of warnings
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commit | commitdiff | tree |
| 2010-06-30 |
Chris Fields | more robust call to ulimit
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commit | commitdiff | tree |
| 2010-06-30 |
Chris Fields | is(), not ok()
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commit | commitdiff | tree |
| 2010-06-30 |
Chris Fields | skip if version greater than 1.2 (old primer3 code)
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commit | commitdiff | tree |
| 2010-06-30 |
Chris Fields | add version() (backport from primer3redux)
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commit | commitdiff | tree |
| 2010-06-30 |
Chris Fields | align left
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commit | commitdiff | tree |
| 2010-06-30 |
Chris Fields | fix odd verbosity-dependent bug with EMBOSS tests
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commit | commitdiff | tree |
| 2010-06-30 |
Chris Fields | add minimal gitignore
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commit | commitdiff | tree |
| 2010-06-30 |
Chris Fields | add ulimit -n check, as these tests fail from too many...
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commit | commitdiff | tree |
| 2010-06-30 |
Chris Fields | add email
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commit | commitdiff | tree |
| 2010-06-30 |
Chris Fields | correct skipped number of tests
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commit | commitdiff | tree |
| 2010-06-30 |
Chris Fields | skip test count off, fixed
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commit | commitdiff | tree |
| 2010-06-30 |
Chris Fields | Merge branch 'master' of github.com:bioperl/bioperl-run
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commit | commitdiff | tree |
| 2010-06-06 |
Chris Fields | add default manifest
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commit | commitdiff | tree |
