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Remove Bio::Graphics examples and scripts
2009-01-02
cjfields
Remove Bio::Graphics exa
m
ples and scripts
commit
|
commitdiff
|
tree
2008-12-26
c
j
f
ields
empty d
i
r
e
c
tory
commit
|
commitdiff
|
tree
2008-12-26
cjfields
Empty director
y
commit
|
commitdiff
|
tree
2008-12-26
cjfields
empty directory
commit
|
commitdiff
|
tree
2008-12-26
c
jfields
sync
w
i
th
t
r
unk
commit
|
commitdiff
|
tree
2008-12-24
cjf
i
el
d
s
small clarificati
o
n
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Add lis
t
of bugs slated
f
or the 1
.
6
.
x s
e
ries
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Updates f
o
r RC
1
commit
|
commitdiff
|
tree
2008-12-24
cjf
i
e
lds
r
e
m
ove
M
icroarray deps
commit
|
commitdiff
|
tree
2008-12-24
cjfields
S
ma
l
l fix for
t
es
t
s
JIC
t
here
i
s a network
error
commit
|
commitdiff
|
tree
2008-12-24
c
jfields
Sy
n
c branch wit
h
tr
u
nk
commit
|
commitdiff
|
tree
2008-12-24
cj
f
ield
s
Remove Bio::Microarray from bran
c
h (still
in development
.
.
.
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Remove (merge didn't
r
e
move this for some reason)
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Remove (merge didn'
t
remove this for s
o
me reason)
commit
|
commitdiff
|
tree
2008-12-22
cjfields
sync tru
n
k wit
h
branch
commit
|
commitdiff
|
tree
2008-12-20
cjfi
e
lds
5
.
6
.
1
is min perl versi
o
n require
d
for all core modules now
commit
|
commitdiff
|
tree
2008-12-19
cjfields
update NAMES
commit
|
commitdiff
|
tree
2008-12-19
c
jfields
small ty
p
o
commit
|
commitdiff
|
tree
2008-12-18
cjfi
e
lds
typo
commit
|
commitdiff
|
tree
2008-12-18
c
j
fields
[bug
2
714]
commit
|
commitdiff
|
tree
2008-12-17
c
jfields
fix test number
commit
|
commitdiff
|
tree
2008-12-17
cjfields
updat
e
Te
s
t::War
n
(
fixes
Qu
a
l
.
t
t
est p
r
obl
e
ms w
i
th
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfie
l
ds
misse
d
one
commit
|
commitdiff
|
tree
2008-12-16
cjfi
e
lds
E
Util
i
ties remote
test
s
back online (simpl
e
te
s
ts only)
commit
|
commitdiff
|
tree
2008-12-16
cjfields
EUtilities
remote
te
s
ts back online (simple tests
on
l
y)
commit
|
commitdiff
|
tree
2008-12-16
cjfields
You must actually
t
est da
t
a if you w
a
nt
t
hi
s
module
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfields
Don't use print!
Changing to $self->debu
g
or commenting ou
t
commit
|
commitdiff
|
tree
2008-12-16
c
j
f
ields
Bi
o
:
:
Graph depr
e
c
a
t
ed in
1
.
6
commit
|
commitdiff
|
tree
2008-12-16
c
j
fields
s
tifle warnin
g
s whe
n
pa
s
sing string instead of integer
commit
|
commitdiff
|
tree
2008-12-16
cjfields
has
h
ref, not a
r
ray
r
ef
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug
2637]
commit
|
commitdiff
|
tree
2008-12-16
cjfi
e
lds
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-16
cjfiel
d
s
[bu
g
2637]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-15
cjfi
e
lds
[bug
2
637]
commit
|
commitdiff
|
tree
2008-12-15
c
jfields
[bug 2712]
commit
|
commitdiff
|
tree
2008-12-15
cjfie
l
ds
scor
e
s
commit
|
commitdiff
|
tree
2008-12-15
cjfields
remaining
t
ests for Bio::T
o
o
l
::
E
Utilities
commit
|
commitdiff
|
tree
2008-12-15
cjfield
s
m
ore test data
commit
|
commitdiff
|
tree
2008-12-15
cjfield
s
Updates:
commit
|
commitdiff
|
tree
2008-12-13
cjfields
initial
bat
c
h of
EUtilParameters tests
commit
|
commitdiff
|
tree
2008-12-13
cjfie
l
ds
ei
n
fo tests
commit
|
commitdiff
|
tree
2008-12-12
c
j
f
ields
some EUtilities t
e
sts (par
s
ing from files
)
commit
|
commitdiff
|
tree
2008-12-12
c
jfield
s
some test data for Bio::Tools::EUtilities
commit
|
commitdiff
|
tree
2008-12-12
cjfields
updates t
o
EUtiliti
e
s (gett
i
ng ready for docs, tests
.
.
.
commit
|
commitdiff
|
tree
2008-12-12
cjf
i
elds
Move EUtilPar
a
meters to T
o
ols (seems more a
p
propri
a
te
)
commit
|
commitdiff
|
tree
2008-12-11
cjfields
fix for bug when getti
n
g cached response with fi
l
e
name
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
c
j
f
i
elds
small pointer
t
o wiki page
(
will upd
a
te along with
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjf
i
el
d
s
s
m
all update
commit
|
commitdiff
|
tree
2008-12-11
cjfields
updates
commit
|
commitdiff
|
tree
2008-12-11
cj
f
ields
return, not '
r
eturn und
e
f'
commit
|
commitdiff
|
tree
2008-12-11
cjfields
return,
not 'return un
d
ef'
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[
b
u
g 2699]
commit
|
commitdiff
|
tree
2008-12-11
cjfie
l
ds
[bug 2699]
commit
|
commitdiff
|
tree
2008-12-11
c
jfields
[bug
27
0
7]
commit
|
commitdiff
|
tree
2008-12-10
cjfi
e
lds
Removing
f
rom HEAD (dep
r
ecated for
1
.
6)
commit
|
commitdiff
|
tree
2008-12-10
cjfields
m
i
ni pod fix
commit
|
commitdiff
|
tree
2008-12-10
cjfi
e
lds
update deprecation li
s
t
commit
|
commitdiff
|
tree
2008-12-10
c
j
f
i
elds
remove Bi
o
::Graphics (
s
eparate package now)
commit
|
commitdiff
|
tree
2008-12-10
c
jfields
[bug
2
637]
commit
|
commitdiff
|
tree
2008-12-10
cjfields
Remove depend
e
nc
i
es
for Bio::Graphics
and d
e
pre
c
ated
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfi
e
lds
Squash warning
commit
|
commitdiff
|
tree
2008-12-09
cjfields
diag() only on verbos
e
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Fix last
loo
p
tests, move some to
c
an_ok
commit
|
commitdiff
|
tree
2008-12-09
c
jfields
M
odify to t
e
st new temp
c
la
s
ses
and
e
nsure that a
d
ded
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
c
jfi
e
lds
update Mauricio's email
commit
|
commitdiff
|
tree
2008-12-08
cjfields
Updat
e
Roy's email
commit
|
commitdiff
|
tree
2008-12-08
c
j
f
i
elds
Roy's e
m
ail (and bioperl
.
o
rg not bioperl
.
edu)
commit
|
commitdiff
|
tree
2008-12-08
cjfields
Updated emails
commit
|
commitdiff
|
tree
2008-12-07
cjfields
[bug 2
6
99]
commit
|
commitdiff
|
tree
2008-12-05
c
j
fields
Need
to
r
e
t
rieve the tre
e
for output
commit
|
commitdiff
|
tree
2008-12-05
cjfields
[bu
g
2450]
commit
|
commitdiff
|
tree
2008-12-04
cjfields
M
ak
e
T
arget a tr
u
e DBL
i
nk
commit
|
commitdiff
|
tree
2008-12-04
cj
f
ie
l
ds
Directory is no longer needed
(Heik
k
i spli
t
t
h
is up
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cjfield
s
a
dd fo
r
ce_
n
s
e t
e
sts
commit
|
commitdiff
|
tree
2008-12-03
c
j
fields
leave ID undefined if it is
n
't p
r
e
s
ent, but
all
o
w th
e
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
c
j
fie
l
ds
Remo
v
e
f
iles accidently added fr
o
m last commit
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Reorgan
i
ze Tools tests
(
nee
d
s
s
o
me mo
r
e splitting)
commit
|
commitdiff
|
tree
2008-12-03
c
j
fields
Remove (tests are
r
e
d
un
d
ant, in Consed
.
t)
commit
|
commitdiff
|
tree
2008-12-03
cjfi
e
lds
Me
r
ge tests a
n
d remov
e
redund
a
nt file
commit
|
commitdiff
|
tree
2008-12-03
cjfield
s
Update test count
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Merge test
s
commit
|
commitdiff
|
tree
2008-12-03
c
jfields
R
emove
r
edunda
n
t
file
commit
|
commitdiff
|
tree
2008-12-03
c
j
fiel
d
s
Remove old
files
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Start Tools mov
e
commit
|
commitdiff
|
tree
2008-12-03
cjf
i
elds
small updat
e
s:
commit
|
commitdiff
|
tree
2008-12-03
cj
f
i
el
d
s
forgot to incre
m
e
n
t
t
e
st count
commit
|
commitdiff
|
tree
2008-12-03
c
j
fields
Add a
c
ouple of tests for seq_id (small
bu
t
sign
i
f
i
cant
.
.
.
commit
|
commitdiff
|
tree
2008-12-02
c
j
fi
e
lds
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
cj
f
iel
d
s
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
cj
f
ields
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
cj
f
ields
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfi
e
lds
some pod upda
t
es
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfields
fix errone
o
usl
y
ren
a
med stockholm tests
commit
|
commitdiff
|
tree
2008-12-02
cjfiel
d
s
s
m
a
l
l pod fix
commit
|
commitdiff
|
tree
2008-11-30
cjfields
sil
e
nc
e
G
uessSeq
F
ormat
.
t warnings (not sure if ol
d
.
.
.
commit
|
commitdiff
|
tree
2008-11-28
cj
f
ields
rearrange to avoi
d
unne
c
essary warnings
commit
|
commitdiff
|
tree
2008-11-28
cjfields
A
d
d w
a
rn
i
ng
f
or mi
s
sin
g
data (real bug)
commit
|
commitdiff
|
tree
2008-11-28
cj
f
ields
hash ref, not a has
h
commit
|
commitdiff
|
tree
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