| 2011-12-14 |
Chris Fields | change URL a bit for minimal HTML munging (params may...
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commit | commitdiff | tree |
| 2011-12-14 |
Chris Fields | perltidy
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commit | commitdiff | tree |
| 2011-12-13 |
Chris Fields | start work towards munging version data from NCBI's...
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commit | commitdiff | tree |
| 2011-12-10 |
Chris Fields | fix annoying warning where labels are assumed to always...
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commit | commitdiff | tree |
| 2011-12-10 |
Chris Fields | if warnings are expected, test for them
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commit | commitdiff | tree |
| 2011-12-09 |
Chris Fields | Merge pull request #29 from wkretzsch/master
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commit | commitdiff | tree |
| 2011-12-09 |
Chris Fields | Merge branch 'master' of https://github.com/fgvieira...
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commit | commitdiff | tree |
| 2011-12-05 |
Chris Fields | fix bug that overwrites values (ID can map to multiple...
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commit | commitdiff | tree |
| 2011-12-05 |
Chris Fields | fix BLAST test fail with reversed pushback data logic
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commit | commitdiff | tree |
| 2011-12-02 |
Chris Fields | don't match strings that wrap lines, use fuzzy match...
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commit | commitdiff | tree |
| 2011-12-02 |
Chris Fields | volatile data, update
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commit | commitdiff | tree |
| 2011-12-01 |
Chris Fields | fix up phylip output to get tests passing; this needs...
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commit | commitdiff | tree |
| 2011-12-01 |
Chris Fields | use Test::Differences::eq_or_diff (via Test::Most)...
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commit | commitdiff | tree |
| 2011-11-29 |
Chris Fields | perltidy; fixes per Peter Rice, re: duplicated accessions...
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commit | commitdiff | tree |
| 2011-11-29 |
Chris Fields | Merge branch 'embl_write_id_line_fix'
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commit | commitdiff | tree |
| 2011-11-02 |
Chris Fields | update ELM URL, fixes broken tests
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commit | commitdiff | tree |
| 2011-10-28 |
Chris Fields | Merge pull request #26 from fgvieira/master
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commit | commitdiff | tree |
| 2011-10-24 |
Chris Fields | fix some volatile remote tests, allow some fuzziness...
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commit | commitdiff | tree |
| 2011-10-24 |
Chris Fields | correct test skip count
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commit | commitdiff | tree |
| 2011-10-24 |
Chris Fields | correct test count
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commit | commitdiff | tree |
| 2011-10-24 |
Chris Fields | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2011-09-29 |
Chris Fields | Merge branch 'master' of github.com:bioperl/bioperl...
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| 2011-09-22 |
Chris Fields | Merge pull request #24 from carandraug/bp_genbank_ref_extractor
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commit | commitdiff | tree |
| 2011-09-20 |
Chris Fields | perltidy
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commit | commitdiff | tree |
| 2011-08-21 |
Chris Fields | URL change, courtesy Ulrik Stervbo; module still needs...
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commit | commitdiff | tree |
| 2011-08-05 |
Chris Fields | use eq, not == for string comparisons; fixes bug#3257...
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commit | commitdiff | tree |
| 2011-08-05 |
Chris Fields | a little cleaning up
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commit | commitdiff | tree |
| 2011-08-05 |
Chris Fields | moved Test::Warn-related hacks to Bio::Root::Test,...
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commit | commitdiff | tree |
| 2011-08-05 |
Chris Fields | use @EXPORT from Test::Most (which does the hard work)
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commit | commitdiff | tree |
| 2011-08-05 |
Chris Fields | get tests working from Test::Most; need to evaulate...
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commit | commitdiff | tree |
| 2011-08-05 |
Chris Fields | bbuild_requires Test::Most
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commit | commitdiff | tree |
| 2011-08-05 |
Chris Fields | remove lib files (not sure about Error.pm yet)
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commit | commitdiff | tree |
| 2011-08-04 |
Chris Fields | strip old $Id tags
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commit | commitdiff | tree |
| 2011-08-04 |
Chris Fields | remove script code that is obsolete
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commit | commitdiff | tree |
| 2011-08-04 |
Chris Fields | rename *.PLS to *.pl; Module::Build reworks the shebang...
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commit | commitdiff | tree |
| 2011-08-04 |
Chris Fields | version bump (conflicts with Version)
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commit | commitdiff | tree |
| 2011-08-01 |
Chris Fields | Revert "buglet (bad test count), reported by George...
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commit | commitdiff | tree |
| 2011-08-01 |
Chris Fields | remove_seq() bug, patch courtesy James Allen, fixes...
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commit | commitdiff | tree |
| 2011-08-01 |
Chris Fields | buglet (bad test count), reported by George Hartzell
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commit | commitdiff | tree |
| 2011-07-27 |
Chris Fields | add that last fix
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commit | commitdiff | tree |
| 2011-07-27 |
Chris Fields | test data for last FASTQ commit
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commit | commitdiff | tree |
| 2011-07-27 |
Chris Fields | fix FASTQ case where qual of 0 stops parse (edge case)
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commit | commitdiff | tree |
| 2011-07-26 |
Chris Fields | Merge pull request #19 from carandraug/script/extract_featur...
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commit | commitdiff | tree |
| 2011-07-25 |
Chris Fields | Merge pull request #18 from carandraug/script/perl...
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commit | commitdiff | tree |
| 2011-07-25 |
Chris Fields | Merge pull request #17 from carandraug/master
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commit | commitdiff | tree |
| 2011-07-11 |
Chris Fields | add option to turn off summary stats when --create...
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commit | commitdiff | tree |
| 2011-07-06 |
Chris Fields | restore --network flag (broke this accidently in last...
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commit | commitdiff | tree |
| 2011-07-05 |
Chris Fields | test, refs bug #3262
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commit | commitdiff | tree |
| 2011-07-05 |
Chris Fields | test, refs #3262
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commit | commitdiff | tree |
| 2011-07-05 |
Chris Fields | remove superfluous line, refs #3262
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commit | commitdiff | tree |
| 2011-07-05 |
Chris Fields | remove $Id$ tag, refs #3262
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commit | commitdiff | tree |
| 2011-07-05 |
Chris Fields | update Changes, refs bug #3262
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commit | commitdiff | tree |
| 2011-06-20 |
Chris Fields | Merge pull request #16 from chadadavis/master
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commit | commitdiff | tree |
| 2011-06-16 |
Chris Fields | turn off explicit warnings for windows users (needs...
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commit | commitdiff | tree |
| 2011-06-16 |
Chris Fields | only add \x01 if prior line doesn't end in a space...
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commit | commitdiff | tree |
| 2011-06-16 |
Chris Fields | updates for last two bug fixes
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commit | commitdiff | tree |
| 2011-06-16 |
Chris Fields | * Address problem when accessing schema via GBrowse2...
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commit | commitdiff | tree |
| 2011-06-16 |
Chris Fields | braino
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commit | commitdiff | tree |
| 2011-06-16 |
Chris Fields | * add code to Bio::DB::Fasta that allows blank lines...
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commit | commitdiff | tree |
| 2011-06-16 |
Chris Fields | that should have been, "fixes bug # 3240", :P
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commit | commitdiff | tree |
| 2011-06-16 |
Chris Fields | add last fix to changes
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commit | commitdiff | tree |
| 2011-06-16 |
Chris Fields | * remove overly-protective grouping, which was causing...
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commit | commitdiff | tree |
| 2011-06-13 |
Chris Fields | doc patch, fixes bug #3250
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commit | commitdiff | tree |
| 2011-06-02 |
Chris Fields | Merge pull request #15 from tupinek/master
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commit | commitdiff | tree |
| 2011-05-19 |
Chris Fields | run this in an eval block; tests are still failing...
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commit | commitdiff | tree |
| 2011-05-19 |
Chris Fields | perl 5.14.0 not pending anymore
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commit | commitdiff | tree |
| 2011-05-19 |
Chris Fields | Ace is deprecated, per LDS, not supported anymore,...
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commit | commitdiff | tree |
| 2011-05-19 |
Chris Fields | add notes about recent fix, and actually change date
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commit | commitdiff | tree |
| 2011-05-19 |
Chris Fields | add a few changes
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commit | commitdiff | tree |
| 2011-05-19 |
Chris Fields | uncomment versioning code, which sets the version in...
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commit | commitdiff | tree |
| 2011-05-10 |
Chris Fields | fix spelling errors, fixes #3228
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commit | commitdiff | tree |
| 2011-05-09 |
Chris Fields | strip out -w flag (see perllexwarn as to why setting...
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commit | commitdiff | tree |
| 2011-05-04 |
Chris Fields | deal with small change in # of contigs returned with...
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commit | commitdiff | tree |
| 2011-05-04 |
Chris Fields | see if we can make PAUSE skip indexing these modules
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commit | commitdiff | tree |
| 2011-05-04 |
Chris Fields | only allow defined data, otherwise nastiness may ensue
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commit | commitdiff | tree |
| 2011-05-04 |
Chris Fields | added suggested change by John Anderson (genehack)...
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commit | commitdiff | tree |
| 2011-05-04 |
Chris Fields | a few more updates
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commit | commitdiff | tree |
| 2011-05-04 |
Chris Fields | remove -w flag (windows, may follow suit with others)
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commit | commitdiff | tree |
| 2011-05-04 |
Chris Fields | add skips and a warning re: NeXML v0.9 support
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commit | commitdiff | tree |
| 2011-05-04 |
Chris Fields | more Changes
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commit | commitdiff | tree |
| 2011-05-04 |
Chris Fields | more deprecated code removal; squash test failing due...
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commit | commitdiff | tree |
| 2011-05-04 |
Chris Fields | XML::Parser::PerlSAX required for these tests
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commit | commitdiff | tree |
| 2011-05-04 |
Chris Fields | Use of qw(...) as parentheses is deprecated with perl...
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commit | commitdiff | tree |
| 2011-05-04 |
Chris Fields | update Changes
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commit | commitdiff | tree |
| 2011-05-04 |
Chris Fields | bump version
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commit | commitdiff | tree |
| 2011-04-19 |
Chris Fields | add some comments
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commit | commitdiff | tree |
| 2011-04-19 |
Chris Fields | NeXML problems also with Bio::AlignIO::nexml, refs...
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commit | commitdiff | tree |
| 2011-04-19 |
Chris Fields | fixes for missing DBI, gbxml reliance on XML::SAX,...
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commit | commitdiff | tree |
| 2011-04-19 |
Chris Fields | Bio::SeqIO::nexml doesn't work with NeXML v0.9 yet...
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commit | commitdiff | tree |
| 2011-04-18 |
Chris Fields | add updated file for NeXML tree parsing, refs #3207
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commit | commitdiff | tree |
| 2011-04-14 |
Chris Fields | finish Changes
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commit | commitdiff | tree |
| 2011-04-14 |
Chris Fields | we are grown-ups now, don't need a passthrough Makefile.PL
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commit | commitdiff | tree |
| 2011-04-14 |
Chris Fields | work on updates for release
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commit | commitdiff | tree |
| 2011-04-14 |
Chris Fields | don't run DB::Taxonomy test w/o XML::Twig
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commit | commitdiff | tree |
| 2011-04-14 |
Chris Fields | no need to print these out to a file, we just store...
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commit | commitdiff | tree |
| 2011-04-14 |
Chris Fields | no need to print out files, these are in the dist already
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commit | commitdiff | tree |
| 2011-04-13 |
Chris Fields | partly squash Assembly warnings
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commit | commitdiff | tree |
| 2011-04-13 |
Chris Fields | formatting again for warning
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commit | commitdiff | tree |
| 2011-04-13 |
Chris Fields | remove redundant tests per Dave Messina
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commit | commitdiff | tree |
| 2011-04-13 |
Chris Fields | add some spacing for warning
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