more deprecated code removal; squash test failing due to different error being returned
tree7309c0a011fe2dba173397d88c022d35a1f63afd
-rw-r--r-- 176 .gitignore
-rw-r--r-- 6407 AUTHORS
-rw-r--r-- 5482 BUGS
drwxr-xr-x - Bio
-rw-r--r-- 9185 BioPerl.pm
-rwxr-xr-x 17532 Build.PL
-rw-r--r-- 66032 Changes
-rw-r--r-- 45919 DEPENDENCIES
-rw-r--r-- 3154 DEPRECATED
-rw-r--r-- 18180 INSTALL
-rw-r--r-- 17 INSTALL.SKIP
-rw-r--r-- 30152 INSTALL.WIN
-rw-r--r-- 41656 LICENSE
-rw-r--r-- 1218 MANIFEST.SKIP
-rw-r--r-- 12231 README
drwxr-xr-x - doc
drwxr-xr-x - examples
drwxr-xr-x - ide
drwxr-xr-x - maintenance
drwxr-xr-x - models
drwxr-xr-x - scripts
drwxr-xr-x - t