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Inc. RC version
2009-01-16
cj
f
ie
l
d
s
Inc
.
RC version
commit
|
commitdiff
|
tree
2009-01-16
c
j
fields
c
a
rry o
v
er test fixes from t
r
unk
commit
|
commitdiff
|
tree
2009-01-16
cjfields
Carry over t
e
st cha
n
g
e from ma
i
n trunk
commit
|
commitdiff
|
tree
2009-01-16
cjfie
l
d
s
Sy
n
c with m
a
i
n
trunk
commit
|
commitdiff
|
tree
2009-01-13
cjfields
Sync wi
t
h main trunk
commit
|
commitdiff
|
tree
2009-01-13
cj
f
ie
l
d
s
Sy
n
c w
i
th main trunk
commit
|
commitdiff
|
tree
2009-01-06
cjfields
Sync
with trunk
.
Thi
s
will appear
in
f
inal release
.
commit
|
commitdiff
|
tree
2009-01-06
c
j
f
ields
Res
o
l
v
e conflict (
c
an
'
t directly merge since trunk
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
c
j
fields
Sync
t
hat last bit with trunk
.
I'll have to merge
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
c
jf
i
e
lds
S
ync with trunk
commit
|
commitdiff
|
tree
2009-01-05
c
jf
i
e
l
ds
Bump RC to 2; will tag, bag, and
s
hip tomorrow after
.
.
.
commit
|
commitdiff
|
tree
2009-01-05
cj
f
ie
l
d
s
S
ync with tr
u
nk
commit
|
commitdiff
|
tree
2009-01-04
cjfields
sync with trunk
commit
|
commitdiff
|
tree
2009-01-02
cj
f
iel
d
s
sync f
r
om
t
ru
n
k
commit
|
commitdiff
|
tree
2009-01-02
cjfields
sync la
s
t c
o
mmit
commit
|
commitdiff
|
tree
2009-01-02
cjfie
l
ds
sync with HEAD
commit
|
commitdiff
|
tree
2009-01-02
cjfi
e
lds
Rem
o
ve t/Graph
i
cs
commit
|
commitdiff
|
tree
2009-01-02
cjfields
Remove Bio::Gr
a
p
hi
c
s examples and scripts
commit
|
commitdiff
|
tree
2008-12-26
cjfields
empty di
r
e
ctory
commit
|
commitdiff
|
tree
2008-12-26
cjfields
Empty directory
commit
|
commitdiff
|
tree
2008-12-26
cjfi
e
lds
em
p
t
y dir
e
ct
o
ry
commit
|
commitdiff
|
tree
2008-12-26
cjfields
sync with trun
k
commit
|
commitdiff
|
tree
2008-12-24
c
jf
i
elds
s
m
all clarification
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Add list
of b
u
g
s
slated
f
or the 1
.
6
.
x series
commit
|
commitdiff
|
tree
2008-12-24
cjf
i
e
l
ds
Updat
e
s for RC1
commit
|
commitdiff
|
tree
2008-12-24
cjfield
s
rem
o
ve
M
icroarray deps
commit
|
commitdiff
|
tree
2008-12-24
cjfi
e
lds
Small
f
ix for tests JI
C
t
here is a net
w
ork err
o
r
commit
|
commitdiff
|
tree
2008-12-24
cjfields
S
y
n
c
bran
c
h
wit
h
t
runk
commit
|
commitdiff
|
tree
2008-12-24
cjfield
s
Remove
B
i
o
::M
i
croarray fr
o
m branch
(
stil
l
in
dev
e
lopmen
t
.
.
.
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Remove (merge didn
'
t re
m
ove this for some
reason)
commit
|
commitdiff
|
tree
2008-12-24
cjfiel
d
s
Remove (me
r
ge didn't remove
t
his for some reason)
commit
|
commitdiff
|
tree
2008-12-22
cj
f
ie
l
ds
sync trunk
w
ith bran
c
h
commit
|
commitdiff
|
tree
2008-12-20
cjfields
5
.
6
.
1 is min perl
versio
n
req
u
ired for
all c
o
r
e modul
e
s now
commit
|
commitdiff
|
tree
2008-12-19
cjfields
update NAMES
commit
|
commitdiff
|
tree
2008-12-19
cjf
i
e
l
ds
small typo
commit
|
commitdiff
|
tree
2008-12-18
cjfields
typo
commit
|
commitdiff
|
tree
2008-12-18
cjfields
[bug 2714
]
commit
|
commitdiff
|
tree
2008-12-17
c
jfields
fix t
e
st number
commit
|
commitdiff
|
tree
2008-12-17
c
j
f
i
elds
u
pdate Test:
:
Warn (fixes Q
u
a
l
.
t
tes
t
problem
s
with
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfields
missed o
n
e
commit
|
commitdiff
|
tree
2008-12-16
cjfields
EUtilities remote tes
t
s
b
ack online
(
simple t
e
sts only)
commit
|
commitdiff
|
tree
2008-12-16
cjfields
EUtilities
r
emote tests back online (simple tests only)
commit
|
commitdiff
|
tree
2008-12-16
c
j
fiel
d
s
You must a
c
t
u
al
l
y test d
a
ta if you want
t
his mod
u
le
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfields
Don
'
t
u
se print! Changing to $se
l
f
->
d
ebug or
c
ommenting out
commit
|
commitdiff
|
tree
2008-12-16
cjfields
Bio::
G
raph deprecated in 1
.
6
commit
|
commitdiff
|
tree
2008-12-16
cjfield
s
stifle warnings w
h
en passing string i
n
stead of
i
nt
e
ger
commit
|
commitdiff
|
tree
2008-12-16
cjf
i
elds
ha
s
h r
e
f
,
n
o
t arr
a
y ref
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[
b
ug
263
7
]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug
2637]
commit
|
commitdiff
|
tree
2008-12-15
cjfiel
d
s
[bug 26
3
7]
commit
|
commitdiff
|
tree
2008-12-15
c
j
f
i
e
lds
[bug 2712]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
scores
commit
|
commitdiff
|
tree
2008-12-15
cjfields
remaining tests for Bio::Tool::EUtil
i
ties
commit
|
commitdiff
|
tree
2008-12-15
c
jfield
s
more tes
t
d
ata
commit
|
commitdiff
|
tree
2008-12-15
cjfi
e
lds
Updates:
commit
|
commitdiff
|
tree
2008-12-13
cjfields
initial batch of
E
Uti
l
Paramet
e
r
s
tests
commit
|
commitdiff
|
tree
2008-12-13
c
jfields
einfo t
e
sts
commit
|
commitdiff
|
tree
2008-12-12
cjfie
l
ds
s
o
m
e EUt
i
lities tests
(p
a
rsin
g
from
f
iles)
commit
|
commitdiff
|
tree
2008-12-12
cjfields
s
ome test data for Bio::Tools::
E
Utilities
commit
|
commitdiff
|
tree
2008-12-12
c
j
fields
updates
t
o EUtilities (getting ready for docs
,
tests
.
.
.
commit
|
commitdiff
|
tree
2008-12-12
cjfi
e
lds
Move EUtilPara
m
et
e
rs to
T
ools (seem
s
more appropr
i
at
e
)
commit
|
commitdiff
|
tree
2008-12-11
cjfields
f
i
x for bug when g
e
tting cached
response with filename
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfield
s
s
mall pointer to wik
i
p
a
ge (will updat
e
al
o
ng with
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfi
e
lds
small update
commit
|
commitdiff
|
tree
2008-12-11
cjfiel
d
s
updates
commit
|
commitdiff
|
tree
2008-12-11
c
jfie
l
ds
return, no
t
'retur
n
undef'
commit
|
commitdiff
|
tree
2008-12-11
cj
f
ields
re
t
urn, no
t
'return undef'
commit
|
commitdiff
|
tree
2008-12-11
c
j
fi
e
lds
[bug 2699]
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[bug
2
69
9
]
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[bug
2707]
commit
|
commitdiff
|
tree
2008-12-10
cjfi
e
l
d
s
R
e
moving from
HEAD (dep
r
ecated for 1
.
6
)
commit
|
commitdiff
|
tree
2008-12-10
cjf
i
elds
mini pod fix
commit
|
commitdiff
|
tree
2008-12-10
cjfield
s
u
pdate deprecati
o
n
l
i
s
t
commit
|
commitdiff
|
tree
2008-12-10
cjfi
e
ld
s
remove B
i
o:
:
Graphic
s
(sepa
r
ate package no
w
)
commit
|
commitdiff
|
tree
2008-12-10
cjf
i
e
l
ds
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-10
cjfields
Remove dependenci
e
s for
B
io
:
:Graphics and depre
c
ated
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Squ
a
sh warning
commit
|
commitdiff
|
tree
2008-12-09
cjfields
dia
g
()
on
l
y on verbose
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Fix last loop tests, move some to can_ok
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Modify to test new te
m
p
classes
a
nd en
s
u
re that
added
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
c
j
fields
update
M
auricio's email
commit
|
commitdiff
|
tree
2008-12-08
cj
f
ields
Update Roy's email
commit
|
commitdiff
|
tree
2008-12-08
cjfi
e
l
ds
Roy's email (a
n
d bioperl
.
org
not bioperl
.
edu)
commit
|
commitdiff
|
tree
2008-12-08
cjfiel
d
s
Updated emails
commit
|
commitdiff
|
tree
2008-12-07
cjfi
e
lds
[bug 2
6
99]
commit
|
commitdiff
|
tree
2008-12-05
cjfie
l
ds
Need to retriev
e
t
he tr
e
e for output
commit
|
commitdiff
|
tree
2008-12-05
cjfields
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-04
c
j
f
i
elds
Make
T
arget a true DBLink
commit
|
commitdiff
|
tree
2008-12-04
cjfields
D
ir
e
ctory
is
no longer
needed (Heikki s
p
lit this up
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cj
f
ields
add force_nse
tes
t
s
commit
|
commitdiff
|
tree
2008-12-03
cjfields
l
eave ID undefine
d
if i
t
isn't present
,
but allow the
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
c
j
f
i
elds
R
e
m
o
ve fi
l
e
s
acciden
t
ly added from la
s
t
com
m
it
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Reorganize Tools tests (n
e
e
d
s
some more splitt
i
ng)
commit
|
commitdiff
|
tree
2008-12-03
c
j
fields
Remove
(t
e
sts ar
e
redundant,
i
n Consed
.
t)
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Merge tests
and rem
o
ve redundant file
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Update test
count
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Mer
g
e tests
commit
|
commitdiff
|
tree
2008-12-03
cjfie
l
ds
Remove redundant file
commit
|
commitdiff
|
tree
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