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Inc. RC version
2009-01-16
cjfiel
d
s
Inc
.
RC ve
r
sion
commit
|
commitdiff
|
tree
2009-01-16
cj
f
ields
carry
ove
r
test fixes from tr
u
nk
commit
|
commitdiff
|
tree
2009-01-16
c
jfields
Carry over test change fro
m
main trunk
commit
|
commitdiff
|
tree
2009-01-16
cjfields
Sync wit
h
mai
n
trunk
commit
|
commitdiff
|
tree
2009-01-13
cjfields
Sync with
m
ain
t
runk
commit
|
commitdiff
|
tree
2009-01-13
c
jfield
s
Sync
with main
t
runk
commit
|
commitdiff
|
tree
2009-01-06
cjfields
S
y
nc with trunk
.
This
w
ill ap
p
ear in final r
e
lease
.
commit
|
commitdiff
|
tree
2009-01-06
c
j
field
s
Resolve
c
onfl
i
ct
(
c
a
n
't
directly mer
g
e sinc
e
trunk
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
cjfields
Sync
that last bit w
i
th trunk
.
I'll h
a
ve
t
o merg
e
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
cjfields
Sync with trun
k
commit
|
commitdiff
|
tree
2009-01-05
cjfiel
d
s
Bum
p
RC
t
o 2; wil
l
tag, bag, and sh
i
p
tomorrow a
f
t
e
r
.
.
.
commit
|
commitdiff
|
tree
2009-01-05
cj
f
ields
Sync with trunk
commit
|
commitdiff
|
tree
2009-01-04
cjfields
sync with trunk
commit
|
commitdiff
|
tree
2009-01-02
c
jfields
sync
from trunk
commit
|
commitdiff
|
tree
2009-01-02
c
j
fields
sync last
c
ommit
commit
|
commitdiff
|
tree
2009-01-02
c
jfiel
d
s
s
y
nc wit
h
HEAD
commit
|
commitdiff
|
tree
2009-01-02
cjf
i
elds
Remove
t/Graph
i
cs
commit
|
commitdiff
|
tree
2009-01-02
cjfields
R
emove Bio::Grap
h
ics exam
p
les
a
n
d
scripts
commit
|
commitdiff
|
tree
2008-12-26
cj
f
ields
empty direc
t
ory
commit
|
commitdiff
|
tree
2008-12-26
cjfields
Empty directory
commit
|
commitdiff
|
tree
2008-12-26
cjfields
empty
dire
c
tory
commit
|
commitdiff
|
tree
2008-12-26
cjf
i
elds
sync
w
ith t
r
u
n
k
commit
|
commitdiff
|
tree
2008-12-24
cjfiel
d
s
s
mall clarificatio
n
commit
|
commitdiff
|
tree
2008-12-24
c
j
fields
Add lis
t
of bugs
s
lated for th
e
1
.
6
.
x series
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Updates fo
r
RC1
commit
|
commitdiff
|
tree
2008-12-24
c
j
fie
l
ds
rem
o
v
e Micr
o
a
rray deps
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Sm
a
ll fix
f
or tests
JIC
there is a network error
commit
|
commitdiff
|
tree
2008-12-24
cjf
i
elds
Sync branc
h
with trunk
commit
|
commitdiff
|
tree
2008-12-24
cjfield
s
R
em
o
ve Bio
:
:Micr
o
array from b
r
a
nch
(
still i
n
develop
m
ent
.
.
.
commit
|
commitdiff
|
tree
2008-12-24
c
j
fields
Remove (merge di
d
n
't re
m
ov
e
t
h
is for some
reason)
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Remove (merg
e
didn't remov
e
th
i
s fo
r
some reason)
commit
|
commitdiff
|
tree
2008-12-22
cj
f
iel
d
s
sync trunk with branch
commit
|
commitdiff
|
tree
2008-12-20
cj
f
ield
s
5
.
6
.
1
is min perl version required
f
o
r all core modules now
commit
|
commitdiff
|
tree
2008-12-19
cjfi
e
lds
updat
e
NAMES
commit
|
commitdiff
|
tree
2008-12-19
cjfiel
d
s
sma
l
l typo
commit
|
commitdiff
|
tree
2008-12-18
cjfields
typ
o
commit
|
commitdiff
|
tree
2008-12-18
cjf
i
el
d
s
[bug
2
71
4
]
commit
|
commitdiff
|
tree
2008-12-17
cjf
i
elds
fix t
e
st number
commit
|
commitdiff
|
tree
2008-12-17
cjfie
l
d
s
update Test::Warn (fixes Qual
.
t
test problems wit
h
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfields
m
issed one
commit
|
commitdiff
|
tree
2008-12-16
cjfields
EUtiliti
e
s remote tests back online (s
i
mple tests only)
commit
|
commitdiff
|
tree
2008-12-16
cjfields
EUti
l
ities remote test
s
back onli
n
e (simple
te
s
ts only)
commit
|
commitdiff
|
tree
2008-12-16
cjf
i
elds
Y
ou must
actu
a
lly test data if you wan
t
t
h
is modul
e
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfields
Don't use
print! Changing to $s
e
lf->de
b
ug or commenti
n
g o
u
t
commit
|
commitdiff
|
tree
2008-12-16
cjfield
s
Bio::Graph d
e
prec
a
t
e
d
i
n
1
.
6
commit
|
commitdiff
|
tree
2008-12-16
c
j
fiel
d
s
stifle
w
a
r
nings when passi
n
g
string instead of integer
commit
|
commitdiff
|
tree
2008-12-16
cj
f
ields
hash r
e
f, not array ref
commit
|
commitdiff
|
tree
2008-12-16
cjfield
s
[
bu
g
263
7
]
commit
|
commitdiff
|
tree
2008-12-16
cj
f
iel
d
s
[bug
2
637]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[b
u
g 2637]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[b
u
g
26
3
7]
commit
|
commitdiff
|
tree
2008-12-15
cj
f
i
elds
[
bug 2637]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
[bug
2
712]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
scores
commit
|
commitdiff
|
tree
2008-12-15
c
j
fields
rema
i
ning tests for B
i
o::Tool::EUtil
i
ties
commit
|
commitdiff
|
tree
2008-12-15
cjfiel
d
s
more test data
commit
|
commitdiff
|
tree
2008-12-15
cjfields
Upd
a
tes
:
commit
|
commitdiff
|
tree
2008-12-13
cjfields
initial batch of E
U
tilPar
a
meters
tests
commit
|
commitdiff
|
tree
2008-12-13
cj
f
ields
einfo test
s
commit
|
commitdiff
|
tree
2008-12-12
cjfields
some EUtil
i
tie
s
tests (p
a
rsing
f
r
o
m
files)
commit
|
commitdiff
|
tree
2008-12-12
cjf
i
elds
some test dat
a
for Bio::Tools::EUti
l
ities
commit
|
commitdiff
|
tree
2008-12-12
cjfields
up
d
a
tes
to EUti
l
ities (g
e
tting
r
e
a
dy for docs, test
s
.
.
.
commit
|
commitdiff
|
tree
2008-12-12
cjfie
l
ds
Move EU
t
ilPa
r
a
m
eters to Tools (seems more app
r
op
r
iate
)
commit
|
commitdiff
|
tree
2008-12-11
cjfields
fix
for bug when getting
c
ached resp
o
nse with
f
i
len
a
me
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfields
sma
l
l pointer to
wiki page (wil
l
update along with
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfields
s
m
all
u
p
date
commit
|
commitdiff
|
tree
2008-12-11
cjf
i
el
d
s
update
s
commit
|
commitdiff
|
tree
2008-12-11
cjfields
return, not 'return
undef'
commit
|
commitdiff
|
tree
2008-12-11
cjfields
return
,
not 'return
u
ndef'
commit
|
commitdiff
|
tree
2008-12-11
cj
f
ields
[
bug
2
699]
commit
|
commitdiff
|
tree
2008-12-11
c
j
fields
[bug
2699]
commit
|
commitdiff
|
tree
2008-12-11
c
jfields
[bug 2707]
commit
|
commitdiff
|
tree
2008-12-10
cjfields
Removing from HEAD (deprecate
d
f
or 1
.
6)
commit
|
commitdiff
|
tree
2008-12-10
c
jfields
mini pod fix
commit
|
commitdiff
|
tree
2008-12-10
cjfields
update deprecation list
commit
|
commitdiff
|
tree
2008-12-10
cjf
i
elds
r
emov
e
Bio::Graphic
s
(separate package
now)
commit
|
commitdiff
|
tree
2008-12-10
cjfields
[
b
u
g
2
6
37]
commit
|
commitdiff
|
tree
2008-12-10
c
j
fields
Remove
dependencies for Bio::G
r
aphics and deprec
a
ted
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Squ
a
sh warn
i
ng
commit
|
commitdiff
|
tree
2008-12-09
c
j
fiel
d
s
diag() only on verb
o
se
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Fix l
a
s
t
loop tests, mov
e
some
t
o ca
n
_ok
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Modif
y
to test new t
e
m
p clas
s
e
s
a
n
d ensur
e
that added
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfield
s
upd
a
te Maur
i
cio's email
commit
|
commitdiff
|
tree
2008-12-08
cjfields
Update Roy's email
commit
|
commitdiff
|
tree
2008-12-08
c
j
fields
Roy's
e
mail (and bioperl
.
org
n
ot biop
e
rl
.
e
d
u
)
commit
|
commitdiff
|
tree
2008-12-08
cjfields
Updated em
a
ils
commit
|
commitdiff
|
tree
2008-12-07
cjfields
[bug
2699]
commit
|
commitdiff
|
tree
2008-12-05
c
jfields
Need to retrieve the tr
e
e for
o
utp
u
t
commit
|
commitdiff
|
tree
2008-12-05
c
j
f
i
elds
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-04
cjfields
Make Target a true
D
BLink
commit
|
commitdiff
|
tree
2008-12-04
cjfi
e
lds
D
i
r
ect
o
ry
is
n
o
long
e
r
n
eeded (Heikki spli
t
thi
s
up
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cjfields
add force_nse tes
t
s
commit
|
commitdiff
|
tree
2008-12-03
c
j
f
ields
l
eave I
D
undefined if it is
n
't present
,
but
a
llow the
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cjf
i
elds
R
e
move files accidently
ad
d
ed f
r
om
l
ast commit
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Reorganize Tool
s
tests (needs some more
spl
i
t
t
ing)
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Rem
o
ve (tests a
r
e
redun
d
ant,
in Consed
.
t)
commit
|
commitdiff
|
tree
2008-12-03
c
j
fiel
d
s
Merge test
s
and
remove red
u
ndant
file
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Upda
t
e test count
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Merge te
s
ts
commit
|
commitdiff
|
tree
2008-12-03
cjfie
l
ds
Remove redunda
n
t
f
ile
commit
|
commitdiff
|
tree
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