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Remove t/Graphics
2009-01-02
cjfie
l
ds
R
e
move
t
/Graphics
commit
|
commitdiff
|
tree
2009-01-02
cjfields
R
emove Bio::Graph
i
c
s
examples a
n
d
scripts
commit
|
commitdiff
|
tree
2008-12-26
c
j
fields
empty dire
c
tory
commit
|
commitdiff
|
tree
2008-12-26
cjfiel
d
s
E
m
p
t
y
direc
t
o
r
y
commit
|
commitdiff
|
tree
2008-12-26
cjfields
e
mpty
directory
commit
|
commitdiff
|
tree
2008-12-26
c
jfields
sy
n
c w
i
th t
r
un
k
commit
|
commitdiff
|
tree
2008-12-24
cjfield
s
small
c
larifica
t
ion
commit
|
commitdiff
|
tree
2008-12-24
cjfields
A
d
d list of
b
ugs slated for the 1
.
6
.
x
series
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Updates for
RC1
commit
|
commitdiff
|
tree
2008-12-24
cjf
i
elds
remove Microarray deps
commit
|
commitdiff
|
tree
2008-12-24
cj
f
ields
Small fix
for
tests JIC there is a n
e
tw
o
rk error
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Sync br
a
nch with trunk
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Remove Bio:
:
Micro
a
rray f
r
o
m
b
ranch (s
t
il
l
in developm
e
nt
.
.
.
commit
|
commitdiff
|
tree
2008-12-24
cjfield
s
Remove
(
m
e
r
g
e
didn't re
m
ov
e
t
h
is for some rea
s
on)
commit
|
commitdiff
|
tree
2008-12-24
c
jfields
Remove
(
merg
e
didn
'
t remove this
f
o
r some re
a
son)
commit
|
commitdiff
|
tree
2008-12-22
cjfields
sync trun
k
with branc
h
commit
|
commitdiff
|
tree
2008-12-20
cjfields
5
.
6
.
1 is min per
l
version
r
e
q
u
ir
e
d for all core module
s
now
commit
|
commitdiff
|
tree
2008-12-19
cjfi
e
lds
upd
a
t
e
NAMES
commit
|
commitdiff
|
tree
2008-12-19
cjf
i
eld
s
sma
l
l typ
o
commit
|
commitdiff
|
tree
2008-12-18
cj
f
ields
t
y
po
commit
|
commitdiff
|
tree
2008-12-18
cj
f
ields
[bu
g
2714]
commit
|
commitdiff
|
tree
2008-12-17
cjfiel
d
s
fix
t
est number
commit
|
commitdiff
|
tree
2008-12-17
cjfields
u
pdate T
e
st::Warn (fi
x
es
Qu
a
l
.
t
test prob
l
ems
w
ith
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfields
m
isse
d
on
e
commit
|
commitdiff
|
tree
2008-12-16
cjfields
EUtilities remote tes
t
s back onl
i
ne (
s
imple tests
o
nly)
commit
|
commitdiff
|
tree
2008-12-16
cjfiel
d
s
EUtilities rem
o
te tes
t
s back online
(sim
p
le
t
ests
o
nly)
commit
|
commitdiff
|
tree
2008-12-16
cjfields
Yo
u
must actual
l
y test data if you want this module
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfields
Don't use
print!
Cha
n
ging
to $s
e
lf->
d
ebu
g
or commenting out
commit
|
commitdiff
|
tree
2008-12-16
cjfields
B
i
o::Gr
a
ph depr
e
cated in 1
.
6
commit
|
commitdiff
|
tree
2008-12-16
cjfields
stif
l
e wa
r
n
ings
when passi
n
g string
inst
e
ad
o
f
i
nteger
commit
|
commitdiff
|
tree
2008-12-16
cjfields
hash
ref,
not arr
a
y
ref
commit
|
commitdiff
|
tree
2008-12-16
cjfi
e
lds
[bug
2
637]
commit
|
commitdiff
|
tree
2008-12-16
c
jfiel
d
s
[bug 26
3
7]
commit
|
commitdiff
|
tree
2008-12-16
c
jfield
s
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug
2
637]
commit
|
commitdiff
|
tree
2008-12-15
cjfi
e
lds
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
[bug 2712]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
s
co
r
es
commit
|
commitdiff
|
tree
2008-12-15
c
jfields
re
m
ai
n
ing tes
t
s for Bio:
:
Tool::EUti
l
itie
s
commit
|
commitdiff
|
tree
2008-12-15
c
jfields
mo
r
e tes
t
data
commit
|
commitdiff
|
tree
2008-12-15
cj
f
ields
Upd
a
tes:
commit
|
commitdiff
|
tree
2008-12-13
cjfiel
d
s
initial batch of EUtilPar
a
meters te
s
ts
commit
|
commitdiff
|
tree
2008-12-13
cjfields
einfo tests
commit
|
commitdiff
|
tree
2008-12-12
cjfields
some
E
Utilitie
s
tests (parsing from
f
i
les)
commit
|
commitdiff
|
tree
2008-12-12
cjf
i
e
lds
some test data f
o
r Bio::T
o
o
l
s::E
U
tilities
commit
|
commitdiff
|
tree
2008-12-12
cjf
i
e
lds
up
d
ates to EUtili
t
ies (
g
etting
r
eady for
doc
s
,
t
ests
.
.
.
commit
|
commitdiff
|
tree
2008-12-12
cjfield
s
Move EUti
l
Par
a
meters to Tools (seems m
o
r
e
a
p
propriate)
commit
|
commitdiff
|
tree
2008-12-11
cjfields
fix f
o
r bug when
g
e
tting cache
d
response with fil
e
name
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
c
j
fields
small pointer to
w
iki p
a
ge
(will update along with
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfie
l
ds
small update
commit
|
commitdiff
|
tree
2008-12-11
cjfie
l
ds
updat
e
s
commit
|
commitdiff
|
tree
2008-12-11
cjfields
r
e
t
urn,
n
ot 'return
u
nd
e
f'
commit
|
commitdiff
|
tree
2008-12-11
cjf
i
eld
s
return,
not 'return u
n
def'
commit
|
commitdiff
|
tree
2008-12-11
c
jfie
l
ds
[
bu
g
2
6
9
9]
commit
|
commitdiff
|
tree
2008-12-11
cjfie
l
ds
[
bug 2699]
commit
|
commitdiff
|
tree
2008-12-11
cjfiel
d
s
[
b
ug 27
0
7
]
commit
|
commitdiff
|
tree
2008-12-10
cjfi
e
l
ds
R
emoving from HE
A
D
(depr
e
c
ated for 1
.
6)
commit
|
commitdiff
|
tree
2008-12-10
cj
f
i
e
lds
mi
n
i
p
o
d fix
commit
|
commitdiff
|
tree
2008-12-10
cjfields
update de
p
recat
i
on
li
s
t
commit
|
commitdiff
|
tree
2008-12-10
c
j
fields
remo
v
e B
i
o::Graphics (separate pack
a
ge now)
commit
|
commitdiff
|
tree
2008-12-10
cjfie
l
ds
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-10
cjfields
Re
m
ove dependenc
i
e
s
for Bio::Graphics and deprecated
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfields
S
qu
a
sh
wa
r
nin
g
commit
|
commitdiff
|
tree
2008-12-09
c
j
fields
diag() only on verbose
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Fi
x
last loop
t
ests, move some t
o
ca
n
_ok
commit
|
commitdiff
|
tree
2008-12-09
cjfields
M
odify to test new t
e
mp classes
a
nd ensure that
a
dded
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
c
j
fields
update Mauricio's
e
mail
commit
|
commitdiff
|
tree
2008-12-08
cjfie
l
ds
Update Roy's email
commit
|
commitdiff
|
tree
2008-12-08
cjfields
R
o
y's email (a
n
d biop
e
r
l
.
org not bioperl
.
edu
)
commit
|
commitdiff
|
tree
2008-12-08
cjfield
s
U
p
dated emails
commit
|
commitdiff
|
tree
2008-12-07
cjfields
[bug
2
6
99]
commit
|
commitdiff
|
tree
2008-12-05
cjf
i
e
l
d
s
Need to
r
etrieve the tree for
ou
t
put
commit
|
commitdiff
|
tree
2008-12-05
c
jfields
[bug 24
5
0
]
commit
|
commitdiff
|
tree
2008-12-04
cj
f
ields
Make T
a
r
g
et a true DBLink
commit
|
commitdiff
|
tree
2008-12-04
cjfields
Dir
e
ctory is no l
o
ng
e
r
n
e
eded (Heikki
s
plit this up
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cjfi
e
l
d
s
a
dd
force_ns
e
tests
commit
|
commitdiff
|
tree
2008-12-03
cjfield
s
leave
I
D undefined if it isn't
p
resen
t
, but a
l
low the
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cjfields
R
emov
e
files accidently added f
r
om last
commit
commit
|
commitdiff
|
tree
2008-12-03
c
jfi
e
l
ds
R
eorganiz
e
T
ools tests (needs some
m
or
e
splitting)
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Remove (tests are
red
u
nda
n
t, in C
o
nsed
.
t)
commit
|
commitdiff
|
tree
2008-12-03
c
j
fie
l
ds
Merge
tes
t
s
and remove redundant
f
ile
commit
|
commitdiff
|
tree
2008-12-03
cjfield
s
Up
d
ate test c
o
unt
commit
|
commitdiff
|
tree
2008-12-03
c
j
fields
Me
r
ge te
s
ts
commit
|
commitdiff
|
tree
2008-12-03
c
j
fields
R
e
move redundant file
commit
|
commitdiff
|
tree
2008-12-03
cjfiel
d
s
R
em
o
ve old fil
e
s
commit
|
commitdiff
|
tree
2008-12-03
cjf
i
elds
S
t
a
r
t Tools move
commit
|
commitdiff
|
tree
2008-12-03
cjfields
sm
a
ll
upd
a
te
s
:
commit
|
commitdiff
|
tree
2008-12-03
cjfiel
d
s
forgo
t
to increment
t
e
st count
commit
|
commitdiff
|
tree
2008-12-03
cj
f
ield
s
Ad
d
a couple of
tes
t
s
for seq
_
id (s
m
all but sign
i
f
i
cant
.
.
.
commit
|
commitdiff
|
tree
2008-12-02
c
j
fields
[bu
g
2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfiel
d
s
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfie
l
ds
[bug 24
5
0]
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[
bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
c
jfields
so
m
e pod update
s
commit
|
commitdiff
|
tree
2008-12-02
cjfiel
d
s
[bug
2
4
50
]
commit
|
commitdiff
|
tree
2008-12-02
c
jfields
fix erroneously ren
a
med stockholm
t
est
s
commit
|
commitdiff
|
tree
2008-12-02
c
jfields
sm
a
l
l
pod fix
commit
|
commitdiff
|
tree
2008-11-30
cjf
i
elds
silence
G
u
essSeqFormat
.
t warning
s
(not sur
e
if
o
ld
.
.
.
commit
|
commitdiff
|
tree
2008-11-28
cjf
i
elds
rearrange
to
avoid
unnecessary warning
s
commit
|
commitdiff
|
tree
2008-11-28
cj
f
ields
Ad
d
warnin
g
for missing data (real bug)
commit
|
commitdiff
|
tree
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