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empty directory
2008-12-26
cjfields
e
mpty directory
commit
|
commitdiff
|
tree
2008-12-26
cjfields
sync with trunk
commit
|
commitdiff
|
tree
2008-12-24
cjfields
s
mall clarification
commit
|
commitdiff
|
tree
2008-12-24
cjf
i
e
l
ds
Add li
s
t of bugs sla
t
ed for the 1
.
6
.
x
serie
s
commit
|
commitdiff
|
tree
2008-12-24
c
jfields
Updates fo
r
RC1
commit
|
commitdiff
|
tree
2008-12-24
cj
f
ields
remove M
i
croa
r
ray deps
commit
|
commitdiff
|
tree
2008-12-24
cjfie
l
ds
Small fix for tests JIC
t
here is
a net
w
ork error
commit
|
commitdiff
|
tree
2008-12-24
cjfiel
d
s
S
ync br
a
nch with
trunk
commit
|
commitdiff
|
tree
2008-12-24
cj
f
ields
Remove Bio::Micro
a
rr
a
y from br
a
nc
h
(still in develop
m
e
n
t
.
.
.
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Remove (me
r
ge didn'
t
re
m
ove this fo
r
some
r
eason)
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Remove (merge didn't remove
t
his
f
or some reason)
commit
|
commitdiff
|
tree
2008-12-22
cjf
i
elds
sync t
r
unk wi
t
h branch
commit
|
commitdiff
|
tree
2008-12-20
cjfields
5
.
6
.
1 is min perl version
r
e
quired for al
l
c
ore modules now
commit
|
commitdiff
|
tree
2008-12-19
cjfie
l
ds
update NAM
E
S
commit
|
commitdiff
|
tree
2008-12-19
cj
f
ields
small typo
commit
|
commitdiff
|
tree
2008-12-18
cjfields
typo
commit
|
commitdiff
|
tree
2008-12-18
cjfield
s
[bug 27
1
4]
commit
|
commitdiff
|
tree
2008-12-17
cjfields
fix
test
n
umber
commit
|
commitdiff
|
tree
2008-12-17
cjf
i
eld
s
u
p
date
T
e
s
t
:
:Warn (fixes Qual
.
t
t
e
st pr
o
blems wi
t
h
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfields
m
i
ss
e
d one
commit
|
commitdiff
|
tree
2008-12-16
cj
f
ie
l
ds
EU
t
ilities r
e
mot
e
tests back onli
n
e (sim
p
le t
e
sts only)
commit
|
commitdiff
|
tree
2008-12-16
cjf
i
e
l
ds
EUtilities r
e
mote t
e
sts back o
n
line (simpl
e
te
s
ts only)
commit
|
commitdiff
|
tree
2008-12-16
cjfields
Y
o
u
must actually
test data
i
f
y
o
u
w
ant
t
h
is modu
l
e
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfields
Don'
t
use print!
C
hangi
n
g to
$
self->debug or
commenting out
commit
|
commitdiff
|
tree
2008-12-16
cjfields
Bio::Graph deprec
a
t
ed in
1
.
6
commit
|
commitdiff
|
tree
2008-12-16
cjfields
stif
l
e warnings
when passing string in
s
tead of int
e
ger
commit
|
commitdiff
|
tree
2008-12-16
cjfie
l
d
s
hash ref, n
o
t
array ref
commit
|
commitdiff
|
tree
2008-12-16
cjf
i
elds
[
b
u
g
2637]
commit
|
commitdiff
|
tree
2008-12-16
cj
f
ields
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[b
u
g 2
6
37]
commit
|
commitdiff
|
tree
2008-12-16
cjf
i
elds
[
bug 2637]
commit
|
commitdiff
|
tree
2008-12-15
c
jfiel
d
s
[
b
ug 2637]
commit
|
commitdiff
|
tree
2008-12-15
cjf
i
elds
[b
u
g
2
7
12]
commit
|
commitdiff
|
tree
2008-12-15
cjf
i
el
d
s
scor
e
s
commit
|
commitdiff
|
tree
2008-12-15
cjfie
l
ds
r
emaini
n
g
t
ests for Bio::Tool::EUtilities
commit
|
commitdiff
|
tree
2008-12-15
cjfiel
d
s
more test data
commit
|
commitdiff
|
tree
2008-12-15
cj
f
ields
Update
s
:
commit
|
commitdiff
|
tree
2008-12-13
cj
f
ields
i
nitial batch of EUtilP
a
r
a
meters tests
commit
|
commitdiff
|
tree
2008-12-13
cj
f
ields
einfo tests
commit
|
commitdiff
|
tree
2008-12-12
c
j
fields
so
m
e
EUt
i
li
t
ies tes
t
s
(
parsi
n
g fr
o
m files)
commit
|
commitdiff
|
tree
2008-12-12
cjfields
s
o
me test da
t
a for Bio::
T
ools::EUtilities
commit
|
commitdiff
|
tree
2008-12-12
cjfields
update
s
t
o EUtilities (g
e
tting re
a
dy
f
or docs, tests
.
.
.
commit
|
commitdiff
|
tree
2008-12-12
cjfield
s
M
o
ve EUtilParameters
to Tools (seems more approp
r
iate)
commit
|
commitdiff
|
tree
2008-12-11
cjfie
l
ds
fix
for bug
w
hen getting cached
r
espo
n
s
e
with filen
a
me
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfields
small pointer to wiki
page (will
u
pda
t
e along with
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
c
j
fields
smal
l
update
commit
|
commitdiff
|
tree
2008-12-11
c
j
f
ie
l
ds
update
s
commit
|
commitdiff
|
tree
2008-12-11
cjf
i
e
lds
return, not '
r
eturn unde
f
'
commit
|
commitdiff
|
tree
2008-12-11
cjfie
l
ds
return, no
t
're
t
u
rn undef
'
commit
|
commitdiff
|
tree
2008-12-11
cjfie
l
ds
[bug 2699]
commit
|
commitdiff
|
tree
2008-12-11
c
j
f
i
elds
[bug
2699]
commit
|
commitdiff
|
tree
2008-12-11
cjfiel
d
s
[bu
g
27
0
7]
commit
|
commitdiff
|
tree
2008-12-10
cjfields
Removing from
H
EAD (deprecate
d
for 1
.
6)
commit
|
commitdiff
|
tree
2008-12-10
c
j
fi
e
l
d
s
mini pod fix
commit
|
commitdiff
|
tree
2008-12-10
cjfields
update
d
e
p
recat
i
on list
commit
|
commitdiff
|
tree
2008-12-10
c
jfields
re
m
ove Bio
:
:
G
r
a
p
hics (sepa
r
a
t
e packa
g
e
n
o
w
)
commit
|
commitdiff
|
tree
2008-12-10
c
jfields
[b
u
g
263
7
]
commit
|
commitdiff
|
tree
2008-12-10
cjfiel
d
s
Remov
e
depend
e
ncie
s
for Bio::Gr
a
phics and depr
e
cated
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfiel
d
s
Squash warning
commit
|
commitdiff
|
tree
2008-12-09
c
jf
i
el
d
s
diag() on
l
y o
n
ve
r
bose
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Fix last loop t
e
sts, move
some to can_ok
commit
|
commitdiff
|
tree
2008-12-09
cjfields
M
o
d
ify to t
e
st new temp classes and ensure th
a
t
a
dded
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfield
s
update
M
auric
i
o
'
s ema
i
l
commit
|
commitdiff
|
tree
2008-12-08
cjfields
Update
Roy's ema
i
l
commit
|
commitdiff
|
tree
2008-12-08
cj
f
ield
s
Roy's email (and bioperl
.
o
rg not bio
p
erl
.
edu)
commit
|
commitdiff
|
tree
2008-12-08
cjfield
s
U
pdated emails
commit
|
commitdiff
|
tree
2008-12-07
cj
f
i
e
lds
[
bug 2699]
commit
|
commitdiff
|
tree
2008-12-05
c
j
fields
Need
t
o
r
etrieve
t
he t
r
ee for output
commit
|
commitdiff
|
tree
2008-12-05
cjfie
l
ds
[bug
2450]
commit
|
commitdiff
|
tree
2008-12-04
cjfields
Make Ta
r
get a true
D
B
Link
commit
|
commitdiff
|
tree
2008-12-04
cjfields
D
i
r
e
cto
r
y is
no lon
g
er nee
d
ed
(Heikki s
p
lit
this up
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cjfields
add forc
e
_nse tests
commit
|
commitdiff
|
tree
2008-12-03
c
jfields
lea
v
e ID undefined if
it is
n
't present,
b
ut allo
w
the
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Remove files acci
d
e
ntly a
d
ded fr
o
m last com
m
it
commit
|
commitdiff
|
tree
2008-12-03
c
jf
i
e
l
ds
R
e
o
rg
a
niz
e
Tools
t
ests (needs
s
ome more splitting)
commit
|
commitdiff
|
tree
2008-12-03
cjfields
R
emo
v
e (
t
es
t
s are re
d
undant
,
in Con
s
ed
.
t)
commit
|
commitdiff
|
tree
2008-12-03
c
jfields
Merge tests an
d
remove redundant file
commit
|
commitdiff
|
tree
2008-12-03
cj
f
iel
d
s
Upda
t
e test c
o
unt
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Me
r
ge te
s
ts
commit
|
commitdiff
|
tree
2008-12-03
c
j
f
ie
l
ds
Rem
o
ve redund
a
nt file
commit
|
commitdiff
|
tree
2008-12-03
cjfields
R
e
m
ove old
files
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Start To
o
ls m
o
ve
commit
|
commitdiff
|
tree
2008-12-03
c
j
f
i
e
lds
small updates:
commit
|
commitdiff
|
tree
2008-12-03
c
j
fields
for
g
o
t
to increment test count
commit
|
commitdiff
|
tree
2008-12-03
c
j
f
ie
l
ds
A
dd
a
coupl
e
of tests
f
or seq_id (small but signi
f
icant
.
.
.
commit
|
commitdiff
|
tree
2008-12-02
c
jfi
e
l
ds
[
b
ug 2450]
commit
|
commitdiff
|
tree
2008-12-02
cj
f
ields
[bug 24
5
0]
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[bu
g
245
0
]
commit
|
commitdiff
|
tree
2008-12-02
cjf
i
e
lds
[bug 24
5
0
]
commit
|
commitdiff
|
tree
2008-12-02
cjfields
some pod updates
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[b
u
g 245
0
]
commit
|
commitdiff
|
tree
2008-12-02
cjfields
f
i
x erro
n
eousl
y
renamed
s
tockholm te
s
t
s
commit
|
commitdiff
|
tree
2008-12-02
c
j
fields
s
mall pod fix
commit
|
commitdiff
|
tree
2008-11-30
cj
f
iel
d
s
sile
n
ce
G
u
ess
S
e
q
Fo
r
m
a
t
.
t warn
i
n
gs (no
t
sure if
o
ld
.
.
.
commit
|
commitdiff
|
tree
2008-11-28
cjfields
rearrange to avoid
u
n
n
e
c
essary w
a
rnin
g
s
commit
|
commitdiff
|
tree
2008-11-28
c
j
f
ield
s
Add warning
for missi
n
g da
t
a (real bu
g
)
commit
|
commitdiff
|
tree
2008-11-28
c
jfields
ha
s
h
ref, not
a
h
a
sh
commit
|
commitdiff
|
tree
2008-11-28
cjfields
t
e
st file name and
t
e
s
t # correctio
n
commit
|
commitdiff
|
tree
2008-11-28
cjfields
c
o
rrect test file name
commit
|
commitdiff
|
tree
2008-11-28
cj
f
ield
s
'
:
:',
n
ot ':'
commit
|
commitdiff
|
tree
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