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empty directory
2008-12-26
cjfie
l
ds
empty dire
c
tory
commit
|
commitdiff
|
tree
2008-12-26
cjfields
E
mpty
directory
commit
|
commitdiff
|
tree
2008-12-26
cjfi
e
ld
s
e
mpty directory
commit
|
commitdiff
|
tree
2008-12-26
cjfields
sync with
t
runk
commit
|
commitdiff
|
tree
2008-12-24
cjfie
l
ds
sm
a
ll c
l
a
r
ificati
o
n
commit
|
commitdiff
|
tree
2008-12-24
c
j
fields
Add
list o
f
bug
s
slated for the 1
.
6
.
x serie
s
commit
|
commitdiff
|
tree
2008-12-24
cjfields
U
pdates
f
or
RC1
commit
|
commitdiff
|
tree
2008-12-24
cjfields
remove Micro
a
rray
de
p
s
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Small
f
i
x
fo
r
tests JIC ther
e
is
a
n
etwork
e
rror
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Sync
b
ranc
h
wi
t
h trunk
commit
|
commitdiff
|
tree
2008-12-24
c
j
fields
Remove Bio::Mi
c
roar
r
ay fro
m
branch (
s
till in
d
ev
e
lop
m
en
t
.
.
.
commit
|
commitdiff
|
tree
2008-12-24
cjfi
e
lds
R
e
move
(
merge
d
i
d
n
'
t
r
e
move t
h
is
for so
m
e reason)
commit
|
commitdiff
|
tree
2008-12-24
cj
f
i
elds
Remove
(merge didn't rem
o
v
e this fo
r
some reason)
commit
|
commitdiff
|
tree
2008-12-22
c
j
f
ie
l
ds
sync trunk with
branch
commit
|
commitdiff
|
tree
2008-12-20
c
jfields
5
.
6
.
1 is min perl version required for a
l
l co
r
e modules now
commit
|
commitdiff
|
tree
2008-12-19
cjfiel
d
s
update
NAMES
commit
|
commitdiff
|
tree
2008-12-19
cjfields
s
m
all typo
commit
|
commitdiff
|
tree
2008-12-18
cjfields
typo
commit
|
commitdiff
|
tree
2008-12-18
cjfield
s
[
bug
2
714
]
commit
|
commitdiff
|
tree
2008-12-17
cjfields
fix
t
e
st num
b
er
commit
|
commitdiff
|
tree
2008-12-17
cjfields
u
pdate
T
est::War
n
(fixes Qual
.
t te
s
t proble
m
s with
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfi
e
lds
m
i
ssed one
commit
|
commitdiff
|
tree
2008-12-16
cjfields
EUtilit
i
es remote tests back online
(
simp
l
e tests only)
commit
|
commitdiff
|
tree
2008-12-16
cjfiel
d
s
E
U
ti
l
ities remote tests back
onlin
e
(simple test
s
only)
commit
|
commitdiff
|
tree
2008-12-16
cjfield
s
You must actual
l
y test data if you want this mo
d
ule
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfie
l
ds
Don't use print!
Changing to $self->debu
g
or commenting
o
u
t
commit
|
commitdiff
|
tree
2008-12-16
cj
f
ields
Bio::Graph deprecated in 1
.
6
commit
|
commitdiff
|
tree
2008-12-16
cjfie
l
ds
stifle warnings when
passing st
r
in
g
instead o
f
in
t
eg
e
r
commit
|
commitdiff
|
tree
2008-12-16
cjfield
s
ha
s
h ref, not
a
rray ref
commit
|
commitdiff
|
tree
2008-12-16
cj
f
ields
[
bu
g
2637
]
commit
|
commitdiff
|
tree
2008-12-16
cjfield
s
[bug 263
7
]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
[bug
2637]
commit
|
commitdiff
|
tree
2008-12-15
cjfiel
d
s
[bu
g
2712
]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
s
cores
commit
|
commitdiff
|
tree
2008-12-15
c
j
fi
e
lds
remaining tes
t
s for Bio::Tool::E
U
t
i
lities
commit
|
commitdiff
|
tree
2008-12-15
c
jfie
l
d
s
mo
r
e te
s
t data
commit
|
commitdiff
|
tree
2008-12-15
cjfields
Updates:
commit
|
commitdiff
|
tree
2008-12-13
cjfields
i
n
iti
a
l
b
atch of EUtilParameters te
s
t
s
commit
|
commitdiff
|
tree
2008-12-13
cjfields
einfo tests
commit
|
commitdiff
|
tree
2008-12-12
c
j
fiel
d
s
som
e
EUtilit
i
es tests (p
a
r
s
ing fr
o
m files)
commit
|
commitdiff
|
tree
2008-12-12
cjfields
some
test data for Bio::T
o
ols::EUtilities
commit
|
commitdiff
|
tree
2008-12-12
cjfields
updates t
o
EUtilities (gettin
g
r
eady
for docs,
t
e
s
t
s
.
.
.
commit
|
commitdiff
|
tree
2008-12-12
cjfield
s
Move EUtilPara
m
e
t
ers to Tools (s
e
ems more appropriate)
commit
|
commitdiff
|
tree
2008-12-11
cjfields
fix for bug w
h
en gett
i
ng cached response with filena
m
e
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfields
sma
l
l
p
oin
t
e
r
t
o
wiki page (w
i
ll update
a
l
o
ng wi
t
h
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfield
s
small update
commit
|
commitdiff
|
tree
2008-12-11
cjfields
updates
commit
|
commitdiff
|
tree
2008-12-11
cjfield
s
return, not
'return un
d
e
f'
commit
|
commitdiff
|
tree
2008-12-11
cjf
i
eld
s
r
eturn, not 'return undef'
commit
|
commitdiff
|
tree
2008-12-11
cjfield
s
[bug 2699]
commit
|
commitdiff
|
tree
2008-12-11
cjf
i
elds
[bug 2699]
commit
|
commitdiff
|
tree
2008-12-11
cjfi
e
lds
[bug 270
7
]
commit
|
commitdiff
|
tree
2008-12-10
cjf
i
elds
Rem
o
ving from H
E
AD
(
dep
r
ecated for 1
.
6
)
commit
|
commitdiff
|
tree
2008-12-10
cjfields
min
i
pod fix
commit
|
commitdiff
|
tree
2008-12-10
cjf
i
elds
upd
a
t
e
dep
r
ecation list
commit
|
commitdiff
|
tree
2008-12-10
cjfields
remove Bio::Graphics
(
separa
t
e
p
ack
a
ge n
o
w
)
commit
|
commitdiff
|
tree
2008-12-10
cjfields
[b
u
g 2637]
commit
|
commitdiff
|
tree
2008-12-10
cjfields
Remov
e
de
p
enden
c
ies
fo
r
Bio::Grap
h
ics and de
p
recated
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Squash warning
commit
|
commitdiff
|
tree
2008-12-09
c
j
fie
l
ds
diag
(
) only on v
e
rbose
commit
|
commitdiff
|
tree
2008-12-09
c
j
fi
e
lds
Fix last
loop tes
t
s
, mo
v
e
some to
ca
n
_ok
commit
|
commitdiff
|
tree
2008-12-09
c
j
fiel
d
s
Modif
y
to test
new
t
emp classes and ensure t
h
at added
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjf
i
elds
upda
t
e
Maur
i
cio's ema
i
l
commit
|
commitdiff
|
tree
2008-12-08
cjfiel
d
s
Up
d
at
e
Ro
y
'
s email
commit
|
commitdiff
|
tree
2008-12-08
cj
f
ields
Roy's email (an
d
bioperl
.
org not
bi
o
perl
.
edu)
commit
|
commitdiff
|
tree
2008-12-08
cjfields
Updated ema
i
l
s
commit
|
commitdiff
|
tree
2008-12-07
cjfields
[bug 2699]
commit
|
commitdiff
|
tree
2008-12-05
cjfields
Ne
e
d to retrieve the
t
ree for output
commit
|
commitdiff
|
tree
2008-12-05
cjfi
e
lds
[
bug 2
4
50]
commit
|
commitdiff
|
tree
2008-12-04
cjfields
Make Tar
g
et a true DBLi
n
k
commit
|
commitdiff
|
tree
2008-12-04
cjfi
e
lds
D
i
recto
r
y
i
s no longer
needed (Hei
k
ki split this up
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
c
j
fields
add
force_nse t
e
sts
commit
|
commitdiff
|
tree
2008-12-03
c
jfield
s
leave ID und
e
fined if it isn't present, but allow
th
e
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Remove files accidentl
y
ad
d
ed f
r
om last commit
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Reorganize Tools
tests (needs som
e
m
ore splitti
n
g)
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Remove (tests
are redundant, in Consed
.
t)
commit
|
commitdiff
|
tree
2008-12-03
c
jfields
Merge
t
ests and remove redundant
file
commit
|
commitdiff
|
tree
2008-12-03
cjfiel
d
s
Update
tes
t
count
commit
|
commitdiff
|
tree
2008-12-03
cjfi
e
ld
s
Merge
t
e
sts
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Remove redundant file
commit
|
commitdiff
|
tree
2008-12-03
cjfield
s
Remove o
l
d files
commit
|
commitdiff
|
tree
2008-12-03
cjfield
s
S
t
art Tools move
commit
|
commitdiff
|
tree
2008-12-03
cjfields
small updates:
commit
|
commitdiff
|
tree
2008-12-03
c
jfields
forgot to
incr
e
ment test co
u
nt
commit
|
commitdiff
|
tree
2008-12-03
cjf
i
el
d
s
A
d
d a coup
l
e of tes
t
s
for
s
eq_id (small but sig
n
ificant
.
.
.
commit
|
commitdiff
|
tree
2008-12-02
cjfiel
d
s
[bu
g
24
5
0]
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[
bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfiel
d
s
[
b
ug 2450]
commit
|
commitdiff
|
tree
2008-12-02
c
j
f
i
elds
[bug
2
450
]
commit
|
commitdiff
|
tree
2008-12-02
cj
f
ie
l
ds
some pod updates
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
c
jfields
fix errone
o
usly renamed
s
to
c
k
h
olm
t
ests
commit
|
commitdiff
|
tree
2008-12-02
c
j
fields
small pod fix
commit
|
commitdiff
|
tree
2008-11-30
cjfields
sile
n
ce G
u
essSeqFor
m
a
t
.
t warning
s
(n
o
t sure if old
.
.
.
commit
|
commitdiff
|
tree
2008-11-28
cjfie
l
ds
rea
r
r
an
g
e to avoid unnec
e
ssary warnings
commit
|
commitdiff
|
tree
2008-11-28
cjfields
Add
warning for
m
issing data (real bu
g
)
commit
|
commitdiff
|
tree
2008-11-28
c
jfiel
d
s
hash ref, n
o
t a
hash
commit
|
commitdiff
|
tree
2008-11-28
cjfields
test file name and test # correcti
o
n
commit
|
commitdiff
|
tree
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