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Empty directory
2008-12-26
cjfi
e
lds
Empty directory
commit
|
commitdiff
|
tree
2008-12-26
cjfiel
d
s
empt
y
director
y
commit
|
commitdiff
|
tree
2008-12-26
cjfiel
d
s
syn
c
w
ith tr
u
nk
commit
|
commitdiff
|
tree
2008-12-24
cjfields
sma
l
l c
l
arifica
t
io
n
commit
|
commitdiff
|
tree
2008-12-24
c
j
fields
Ad
d
list of bugs sla
t
ed fo
r
t
he
1
.
6
.
x
series
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Upda
t
e
s
for
RC1
commit
|
commitdiff
|
tree
2008-12-24
cjfiel
d
s
r
emove Microarra
y
deps
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Small fix
f
or test
s
JIC
t
here is a network er
r
or
commit
|
commitdiff
|
tree
2008-12-24
c
j
fields
Sy
n
c
b
ra
n
ch with trunk
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Remove Bi
o
::Mic
r
oarray fr
o
m branch
(
still in dev
e
l
o
pm
e
n
t
.
.
.
commit
|
commitdiff
|
tree
2008-12-24
cj
f
ields
Remov
e
(merge didn't rem
o
ve this for
s
o
me reaso
n
)
commit
|
commitdiff
|
tree
2008-12-24
c
j
fields
Remove (merg
e
didn't
re
m
ove this for some reaso
n
)
commit
|
commitdiff
|
tree
2008-12-22
cjfi
e
l
ds
s
y
nc trunk with
branch
commit
|
commitdiff
|
tree
2008-12-20
cjfi
e
l
d
s
5
.
6
.
1
is
m
in perl
v
ersion required for all core m
o
d
u
l
e
s now
commit
|
commitdiff
|
tree
2008-12-19
cjfie
l
ds
update
N
AMES
commit
|
commitdiff
|
tree
2008-12-19
c
j
field
s
small typo
commit
|
commitdiff
|
tree
2008-12-18
cjfie
l
d
s
t
ypo
commit
|
commitdiff
|
tree
2008-12-18
cjfields
[
bug 2714]
commit
|
commitdiff
|
tree
2008-12-17
c
j
f
i
elds
fi
x
test number
commit
|
commitdiff
|
tree
2008-12-17
c
j
fields
up
d
ate
Test::
W
arn (fixes Qual
.
t test p
r
oblems with
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfields
misse
d
on
e
commit
|
commitdiff
|
tree
2008-12-16
cjfields
EUtilities
r
emote
t
e
s
ts
b
ack
o
nline (simple tes
t
s
o
nly)
commit
|
commitdiff
|
tree
2008-12-16
cjf
i
e
l
d
s
EU
t
ilitie
s
remote tests
back onl
i
ne (sim
p
le t
e
sts on
l
y)
commit
|
commitdiff
|
tree
2008-12-16
c
j
f
i
e
l
ds
You must actually t
e
st data
i
f you
w
ant this mo
d
ule
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfi
e
l
ds
Don't use print!
C
hanging to $self-
>
d
e
b
ug
o
r comm
e
n
ting
o
ut
commit
|
commitdiff
|
tree
2008-12-16
cj
f
ields
Bio
:
:
G
raph
de
p
recated in 1
.
6
commit
|
commitdiff
|
tree
2008-12-16
cjfiel
d
s
stifle warnings when
passing string instead of i
n
tege
r
commit
|
commitdiff
|
tree
2008-12-16
cj
f
i
elds
ha
s
h ref, no
t
array ref
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug
2
637]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[b
u
g 2637]
commit
|
commitdiff
|
tree
2008-12-16
c
jfield
s
[bug
2
637]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bu
g
2
63
7
]
commit
|
commitdiff
|
tree
2008-12-15
cjfiel
d
s
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-15
cjf
i
elds
[bug 2712]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
scores
commit
|
commitdiff
|
tree
2008-12-15
cjfields
r
e
ma
i
ning tests
for Bio::Tool::EUtilities
commit
|
commitdiff
|
tree
2008-12-15
cjf
i
elds
more
test data
commit
|
commitdiff
|
tree
2008-12-15
cjfields
Updates:
commit
|
commitdiff
|
tree
2008-12-13
cjf
i
elds
initial ba
t
ch
of EUtilParamete
r
s
te
s
t
s
commit
|
commitdiff
|
tree
2008-12-13
c
j
fie
l
ds
einfo tests
commit
|
commitdiff
|
tree
2008-12-12
cjfields
s
o
me
EUtil
i
t
i
es tests (parsing from files)
commit
|
commitdiff
|
tree
2008-12-12
c
jfields
some test
data f
o
r Bi
o
::
T
oo
l
s::EUti
l
ities
commit
|
commitdiff
|
tree
2008-12-12
cjfi
e
lds
updates to EUtil
i
ti
e
s (ge
t
tin
g
read
y
for doc
s
,
tests
.
.
.
commit
|
commitdiff
|
tree
2008-12-12
cjfiel
d
s
M
o
v
e E
U
tilParameters to Tools (seems more appropriate)
commit
|
commitdiff
|
tree
2008-12-11
cjfields
f
ix for bug when getting cached response with f
i
lename
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfields
s
mall p
o
inter to wiki pag
e
(
will update along
w
i
t
h
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cj
f
ield
s
small update
commit
|
commitdiff
|
tree
2008-12-11
cjf
i
elds
upd
a
tes
commit
|
commitdiff
|
tree
2008-12-11
cjfie
l
ds
r
et
u
rn, not 'return undef'
commit
|
commitdiff
|
tree
2008-12-11
cjfi
e
l
d
s
r
etu
r
n,
n
ot 're
t
urn undef'
commit
|
commitdiff
|
tree
2008-12-11
cjfield
s
[bug
2699]
commit
|
commitdiff
|
tree
2008-12-11
c
jfiel
d
s
[bu
g
2
699
]
commit
|
commitdiff
|
tree
2008-12-11
cjf
i
elds
[
b
ug 2707]
commit
|
commitdiff
|
tree
2008-12-10
c
j
fields
Remo
v
ing from HEAD
(
deprecated
f
or 1
.
6)
commit
|
commitdiff
|
tree
2008-12-10
cjfields
mini pod
f
ix
commit
|
commitdiff
|
tree
2008-12-10
cjfields
update d
e
p
r
ec
a
tion lis
t
commit
|
commitdiff
|
tree
2008-12-10
cjfie
l
ds
remove Bio::Graphics
(
s
e
parate package
n
ow)
commit
|
commitdiff
|
tree
2008-12-10
c
jfields
[b
u
g
2
637
]
commit
|
commitdiff
|
tree
2008-12-10
cjfie
l
ds
Re
m
ov
e
dependencies
f
o
r Bio::G
r
aphics an
d
deprecated
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
c
jfi
e
lds
S
q
uash warning
commit
|
commitdiff
|
tree
2008-12-09
cjfiel
d
s
diag() only on verbos
e
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Fix last l
o
op t
e
sts,
m
ove some to can
_
ok
commit
|
commitdiff
|
tree
2008-12-09
c
j
fields
M
o
dify to test new te
m
p
classes and e
n
s
u
r
e
t
hat
a
d
d
ed
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cj
f
ields
upd
a
te Mau
r
icio's email
commit
|
commitdiff
|
tree
2008-12-08
cjfiel
d
s
Update
Ro
y
's email
commit
|
commitdiff
|
tree
2008-12-08
c
jfields
Roy's email (
a
nd bioperl
.
org not bio
p
erl
.
e
du)
commit
|
commitdiff
|
tree
2008-12-08
cjfields
U
pdated
ema
i
ls
commit
|
commitdiff
|
tree
2008-12-07
cjfields
[b
u
g 2699]
commit
|
commitdiff
|
tree
2008-12-05
c
j
fields
Need to retrieve the tree for
o
utput
commit
|
commitdiff
|
tree
2008-12-05
c
j
fields
[
b
ug
2
450]
commit
|
commitdiff
|
tree
2008-12-04
cjfields
Ma
k
e Target a tr
u
e D
B
L
ink
commit
|
commitdiff
|
tree
2008-12-04
cjfie
l
ds
Directo
r
y
i
s no longe
r
needed (Heikki split this
up
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cjf
i
el
d
s
add force_nse t
e
s
t
s
commit
|
commitdiff
|
tree
2008-12-03
c
j
fields
leave ID
u
n
de
f
ine
d
i
f it
i
sn't prese
n
t, but
a
llow the
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Remov
e
fi
l
es
a
c
cidently ad
d
ed fro
m
last c
o
mm
i
t
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Reorgan
i
ze
Tools te
s
ts (ne
e
ds some mo
r
e spl
i
tting)
commit
|
commitdiff
|
tree
2008-12-03
c
j
fields
Remove (tes
t
s are re
d
und
a
nt, in
C
onsed
.
t
)
commit
|
commitdiff
|
tree
2008-12-03
cjfield
s
Merge
t
e
s
ts and remove redundant f
i
le
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Updat
e
test count
commit
|
commitdiff
|
tree
2008-12-03
c
j
fields
Mer
g
e
t
est
s
commit
|
commitdiff
|
tree
2008-12-03
cjfie
l
d
s
Remove re
d
u
n
d
ant
file
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Remove
o
ld fil
e
s
commit
|
commitdiff
|
tree
2008-12-03
cjf
i
elds
Start
Tools mov
e
commit
|
commitdiff
|
tree
2008-12-03
cjfi
e
lds
smal
l
updates:
commit
|
commitdiff
|
tree
2008-12-03
cjfields
fo
r
got to increment test count
commit
|
commitdiff
|
tree
2008-12-03
cjfields
A
dd a couple of tests for
s
eq_id
(
sma
l
l but significant
.
.
.
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[bug 245
0
]
commit
|
commitdiff
|
tree
2008-12-02
c
j
f
i
e
ld
s
[bug 2
4
5
0]
commit
|
commitdiff
|
tree
2008-12-02
cjfiel
d
s
[bug
2450
]
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[bug
2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfield
s
some pod
u
p
d
ates
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfields
fix erroneously ren
a
med s
t
ockholm tests
commit
|
commitdiff
|
tree
2008-12-02
c
jf
i
e
l
ds
small
p
od fix
commit
|
commitdiff
|
tree
2008-11-30
cjfields
silence
GuessSe
q
Form
a
t
.
t warni
n
gs (not sure if o
l
d
.
.
.
commit
|
commitdiff
|
tree
2008-11-28
cjfields
rearra
n
ge to avoid u
n
n
e
cessary warni
n
g
s
commit
|
commitdiff
|
tree
2008-11-28
c
j
fields
A
d
d warning f
o
r mi
s
sing data
(
rea
l
bug)
commit
|
commitdiff
|
tree
2008-11-28
cjfields
hash r
e
f
, no
t
a h
a
sh
commit
|
commitdiff
|
tree
2008-11-28
cjfields
t
e
st fil
e
na
m
e
a
n
d
test #
c
orrectio
n
commit
|
commitdiff
|
tree
2008-11-28
cj
f
ields
co
r
re
c
t test file name
commit
|
commitdiff
|
tree
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