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2008-12-24	cjfields	Sync branch with trunk	commit \| commitdiff \| tree
2008-12-24	cjfields	Remove Bio::Microarray from branch (still in development...	commit \| commitdiff \| tree
2008-12-24	cjfields	Remove (merge didn't remove this for some reason)	commit \| commitdiff \| tree
2008-12-24	cjfields	Remove (merge didn't remove this for some reason)	commit \| commitdiff \| tree
2008-12-22	cjfields	sync trunk with branch	commit \| commitdiff \| tree
2008-12-20	cjfields	5.6.1 is min perl version required for all core modules now	commit \| commitdiff \| tree
2008-12-19	cjfields	update NAMES	commit \| commitdiff \| tree
2008-12-19	cjfields	small typo	commit \| commitdiff \| tree
2008-12-18	cjfields	typo	commit \| commitdiff \| tree
2008-12-18	cjfields	[bug 2714]	commit \| commitdiff \| tree
2008-12-17	cjfields	fix test number	commit \| commitdiff \| tree
2008-12-17	cjfields	update Test::Warn (fixes Qual.t test problems with...	commit \| commitdiff \| tree
2008-12-16	cjfields	missed one	commit \| commitdiff \| tree
2008-12-16	cjfields	EUtilities remote tests back online (simple tests only)	commit \| commitdiff \| tree
2008-12-16	cjfields	EUtilities remote tests back online (simple tests only)	commit \| commitdiff \| tree
2008-12-16	cjfields	You must actually test data if you want this module...	commit \| commitdiff \| tree
2008-12-16	cjfields	Don't use print! Changing to $self->debug or commenting out	commit \| commitdiff \| tree
2008-12-16	cjfields	Bio::Graph deprecated in 1.6	commit \| commitdiff \| tree
2008-12-16	cjfields	stifle warnings when passing string instead of integer	commit \| commitdiff \| tree
2008-12-16	cjfields	hash ref, not array ref	commit \| commitdiff \| tree
2008-12-16	cjfields	[bug 2637]	commit \| commitdiff \| tree
2008-12-16	cjfields	[bug 2637]	commit \| commitdiff \| tree
2008-12-16	cjfields	[bug 2637]	commit \| commitdiff \| tree
2008-12-16	cjfields	[bug 2637]	commit \| commitdiff \| tree
2008-12-15	cjfields	[bug 2637]	commit \| commitdiff \| tree
2008-12-15	cjfields	[bug 2712]	commit \| commitdiff \| tree
2008-12-15	cjfields	scores	commit \| commitdiff \| tree
2008-12-15	cjfields	remaining tests for Bio::Tool::EUtilities	commit \| commitdiff \| tree
2008-12-15	cjfields	more test data	commit \| commitdiff \| tree
2008-12-15	cjfields	Updates:	commit \| commitdiff \| tree
2008-12-13	cjfields	initial batch of EUtilParameters tests	commit \| commitdiff \| tree
2008-12-13	cjfields	einfo tests	commit \| commitdiff \| tree
2008-12-12	cjfields	some EUtilities tests (parsing from files)	commit \| commitdiff \| tree
2008-12-12	cjfields	some test data for Bio::Tools::EUtilities	commit \| commitdiff \| tree
2008-12-12	cjfields	updates to EUtilities (getting ready for docs, tests...	commit \| commitdiff \| tree
2008-12-12	cjfields	Move EUtilParameters to Tools (seems more appropriate)	commit \| commitdiff \| tree
2008-12-11	cjfields	fix for bug when getting cached response with filename...	commit \| commitdiff \| tree
2008-12-11	cjfields	small pointer to wiki page (will update along with...	commit \| commitdiff \| tree
2008-12-11	cjfields	small update	commit \| commitdiff \| tree
2008-12-11	cjfields	updates	commit \| commitdiff \| tree
2008-12-11	cjfields	return, not 'return undef'	commit \| commitdiff \| tree
2008-12-11	cjfields	return, not 'return undef'	commit \| commitdiff \| tree
2008-12-11	cjfields	[bug 2699]	commit \| commitdiff \| tree
2008-12-11	cjfields	[bug 2699]	commit \| commitdiff \| tree
2008-12-11	cjfields	[bug 2707]	commit \| commitdiff \| tree
2008-12-10	cjfields	Removing from HEAD (deprecated for 1.6)	commit \| commitdiff \| tree
2008-12-10	cjfields	mini pod fix	commit \| commitdiff \| tree
2008-12-10	cjfields	update deprecation list	commit \| commitdiff \| tree
2008-12-10	cjfields	remove Bio::Graphics (separate package now)	commit \| commitdiff \| tree
2008-12-10	cjfields	[bug 2637]	commit \| commitdiff \| tree
2008-12-10	cjfields	Remove dependencies for Bio::Graphics and deprecated...	commit \| commitdiff \| tree
2008-12-09	cjfields	Squash warning	commit \| commitdiff \| tree
2008-12-09	cjfields	diag() only on verbose	commit \| commitdiff \| tree
2008-12-09	cjfields	Fix last loop tests, move some to can_ok	commit \| commitdiff \| tree
2008-12-09	cjfields	Modify to test new temp classes and ensure that added...	commit \| commitdiff \| tree
2008-12-09	cjfields	update Mauricio's email	commit \| commitdiff \| tree
2008-12-08	cjfields	Update Roy's email	commit \| commitdiff \| tree
2008-12-08	cjfields	Roy's email (and bioperl.org not bioperl.edu)	commit \| commitdiff \| tree
2008-12-08	cjfields	Updated emails	commit \| commitdiff \| tree
2008-12-07	cjfields	[bug 2699]	commit \| commitdiff \| tree
2008-12-05	cjfields	Need to retrieve the tree for output	commit \| commitdiff \| tree
2008-12-05	cjfields	[bug 2450]	commit \| commitdiff \| tree
2008-12-04	cjfields	Make Target a true DBLink	commit \| commitdiff \| tree
2008-12-04	cjfields	Directory is no longer needed (Heikki split this up...	commit \| commitdiff \| tree
2008-12-03	cjfields	add force_nse tests	commit \| commitdiff \| tree
2008-12-03	cjfields	leave ID undefined if it isn't present, but allow the...	commit \| commitdiff \| tree
2008-12-03	cjfields	Remove files accidently added from last commit	commit \| commitdiff \| tree
2008-12-03	cjfields	Reorganize Tools tests (needs some more splitting)	commit \| commitdiff \| tree
2008-12-03	cjfields	Remove (tests are redundant, in Consed.t)	commit \| commitdiff \| tree
2008-12-03	cjfields	Merge tests and remove redundant file	commit \| commitdiff \| tree
2008-12-03	cjfields	Update test count	commit \| commitdiff \| tree
2008-12-03	cjfields	Merge tests	commit \| commitdiff \| tree
2008-12-03	cjfields	Remove redundant file	commit \| commitdiff \| tree
2008-12-03	cjfields	Remove old files	commit \| commitdiff \| tree
2008-12-03	cjfields	Start Tools move	commit \| commitdiff \| tree
2008-12-03	cjfields	small updates:	commit \| commitdiff \| tree
2008-12-03	cjfields	forgot to increment test count	commit \| commitdiff \| tree
2008-12-03	cjfields	Add a couple of tests for seq_id (small but significant...	commit \| commitdiff \| tree
2008-12-02	cjfields	[bug 2450]	commit \| commitdiff \| tree
2008-12-02	cjfields	[bug 2450]	commit \| commitdiff \| tree
2008-12-02	cjfields	[bug 2450]	commit \| commitdiff \| tree
2008-12-02	cjfields	[bug 2450]	commit \| commitdiff \| tree
2008-12-02	cjfields	some pod updates	commit \| commitdiff \| tree
2008-12-02	cjfields	[bug 2450]	commit \| commitdiff \| tree
2008-12-02	cjfields	fix erroneously renamed stockholm tests	commit \| commitdiff \| tree
2008-12-02	cjfields	small pod fix	commit \| commitdiff \| tree
2008-11-30	cjfields	silence GuessSeqFormat.t warnings (not sure if old...	commit \| commitdiff \| tree
2008-11-28	cjfields	rearrange to avoid unnecessary warnings	commit \| commitdiff \| tree
2008-11-28	cjfields	Add warning for missing data (real bug)	commit \| commitdiff \| tree
2008-11-28	cjfields	hash ref, not a hash	commit \| commitdiff \| tree
2008-11-28	cjfields	test file name and test # correction	commit \| commitdiff \| tree
2008-11-28	cjfields	correct test file name	commit \| commitdiff \| tree
2008-11-28	cjfields	'::', not ':'	commit \| commitdiff \| tree
2008-11-28	cjfields	rename (recursive tests think this is a test file)	commit \| commitdiff \| tree
2008-11-28	cjfields	recurse into test subdirectories (means any non-test...	commit \| commitdiff \| tree
2008-11-28	cjfields	remove redundant copy	commit \| commitdiff \| tree
2008-11-28	cjfields	move into directory structure	commit \| commitdiff \| tree
2008-11-28	cjfields	move into directory structure (DaveM++)	commit \| commitdiff \| tree
2008-11-26	cjfields	[bug 2567]	commit \| commitdiff \| tree
2008-11-26	cjfields	Redundant; file was renamed SearchIO_blast_pull.t.	commit \| commitdiff \| tree
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