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carry over test fixes from trunk
2009-01-16
cjfields
carry o
v
er test fixes
from tru
n
k
commit
|
commitdiff
|
tree
2009-01-16
cjfi
e
lds
Carry over test change fr
o
m mai
n
trunk
commit
|
commitdiff
|
tree
2009-01-16
cjf
i
elds
Sync with main
trun
k
commit
|
commitdiff
|
tree
2009-01-13
c
jfields
Sync w
i
t
h m
a
in trunk
commit
|
commitdiff
|
tree
2009-01-13
c
jfield
s
Sync with m
a
i
n trunk
commit
|
commitdiff
|
tree
2009-01-06
cjfiel
d
s
Sync wit
h
t
r
unk
.
This wi
l
l
appear in final
r
elease
.
commit
|
commitdiff
|
tree
2009-01-06
cjfiel
d
s
Resolve conflict (can't dir
e
ctly merge si
n
ce trunk
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
cjfields
Sync that last bit with trunk
.
I'll have to merg
e
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
cjfields
S
ync w
i
th trunk
commit
|
commitdiff
|
tree
2009-01-05
cjfields
Bump R
C
to
2;
w
ill
tag, bag, and ship tomor
r
ow
af
t
e
r
.
.
.
commit
|
commitdiff
|
tree
2009-01-05
cjfields
S
y
nc wi
t
h
t
run
k
commit
|
commitdiff
|
tree
2009-01-04
cj
f
ields
sync with
t
r
u
nk
commit
|
commitdiff
|
tree
2009-01-02
cjfields
syn
c
from
trunk
commit
|
commitdiff
|
tree
2009-01-02
cjfiel
d
s
sync last commit
commit
|
commitdiff
|
tree
2009-01-02
c
j
fields
sync wit
h
HEAD
commit
|
commitdiff
|
tree
2009-01-02
cjfields
Rem
o
v
e t/
G
r
a
phic
s
commit
|
commitdiff
|
tree
2009-01-02
cjfield
s
Remove
Bio::Graphics
e
xampl
e
s and scripts
commit
|
commitdiff
|
tree
2008-12-26
cjfie
l
ds
empty directory
commit
|
commitdiff
|
tree
2008-12-26
cjfields
Empty directory
commit
|
commitdiff
|
tree
2008-12-26
cjfi
e
l
ds
e
m
p
ty directory
commit
|
commitdiff
|
tree
2008-12-26
cjfields
sync with trunk
commit
|
commitdiff
|
tree
2008-12-24
cjfi
e
lds
small clarification
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Add li
s
t
of bugs slat
e
d for the 1
.
6
.
x seri
e
s
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Updates for RC1
commit
|
commitdiff
|
tree
2008-12-24
c
jf
i
elds
remove M
i
croarr
a
y deps
commit
|
commitdiff
|
tree
2008-12-24
cjfiel
d
s
Small fix for test
s
JIC t
h
ere
i
s a
network
e
rror
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Syn
c
branch with trunk
commit
|
commitdiff
|
tree
2008-12-24
cjfi
e
ld
s
Remove Bio::Mic
r
oarray f
r
om bra
n
c
h
(still i
n
developme
n
t
.
.
.
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Re
m
ove (merge didn't remove this
f
or some reason)
commit
|
commitdiff
|
tree
2008-12-24
cjfield
s
R
e
move
(
merge
didn
'
t rem
o
ve this f
o
r
some reason)
commit
|
commitdiff
|
tree
2008-12-22
cj
f
ields
sync trunk with
b
ranc
h
commit
|
commitdiff
|
tree
2008-12-20
cjfields
5
.
6
.
1
is min perl ve
r
s
ion required for all c
o
r
e mod
u
les
now
commit
|
commitdiff
|
tree
2008-12-19
cjfields
update NAMES
commit
|
commitdiff
|
tree
2008-12-19
c
j
fields
s
m
all t
y
po
commit
|
commitdiff
|
tree
2008-12-18
cjfi
e
lds
typo
commit
|
commitdiff
|
tree
2008-12-18
cjfields
[
bug 2714]
commit
|
commitdiff
|
tree
2008-12-17
cjfields
fix tes
t
number
commit
|
commitdiff
|
tree
2008-12-17
cjfields
update Test::Wa
r
n (fixes Qual
.
t
t
e
st problems w
i
th
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
c
j
fields
m
i
ssed
one
commit
|
commitdiff
|
tree
2008-12-16
c
j
fields
EUt
i
l
ities
r
emote tes
t
s back online
(simple tests only)
commit
|
commitdiff
|
tree
2008-12-16
cjfields
EUti
l
ities remote t
e
sts ba
c
k
online (simp
l
e tests only)
commit
|
commitdiff
|
tree
2008-12-16
c
j
field
s
Y
o
u must ac
t
ually test d
a
ta if you want this module
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfields
D
on'
t
u
se print! Chan
g
ing to $sel
f
->d
e
bu
g
or commenting out
commit
|
commitdiff
|
tree
2008-12-16
cjfie
l
ds
B
i
o
::Graph deprecated in 1
.
6
commit
|
commitdiff
|
tree
2008-12-16
cjfields
stifle warnin
g
s
w
h
e
n
p
a
ssi
n
g string
i
n
stead of intege
r
commit
|
commitdiff
|
tree
2008-12-16
c
j
fields
has
h
ref, not array ref
commit
|
commitdiff
|
tree
2008-12-16
c
j
fields
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug 2
6
37]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug 26
3
7]
commit
|
commitdiff
|
tree
2008-12-16
c
jfield
s
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
[
b
ug 2712]
commit
|
commitdiff
|
tree
2008-12-15
cjfield
s
scores
commit
|
commitdiff
|
tree
2008-12-15
cjfields
rem
a
ining te
s
ts for Bio::To
o
l
:
:E
U
tilities
commit
|
commitdiff
|
tree
2008-12-15
cjfields
more
t
est d
a
t
a
commit
|
commitdiff
|
tree
2008-12-15
cjfields
U
p
dates:
commit
|
commitdiff
|
tree
2008-12-13
cjfields
init
i
a
l
batch
of EUtil
P
ar
a
m
e
t
ers tests
commit
|
commitdiff
|
tree
2008-12-13
cj
f
ields
einfo t
e
sts
commit
|
commitdiff
|
tree
2008-12-12
cjfie
l
ds
some E
U
t
i
lities
t
e
sts (par
s
ing
from
file
s
)
commit
|
commitdiff
|
tree
2008-12-12
cjfiel
d
s
some test data
f
o
r Bio::Tools::EUt
i
l
i
ties
commit
|
commitdiff
|
tree
2008-12-12
c
jfields
updates to EUtili
t
ies
(
gett
i
ng ready for docs, t
e
sts
.
.
.
commit
|
commitdiff
|
tree
2008-12-12
cjfields
Mo
v
e EUtilParameters to
Tools (s
e
em
s
mo
r
e
appropr
i
ate)
commit
|
commitdiff
|
tree
2008-12-11
cjfields
f
i
x for bug when
g
etting cached response with f
i
len
a
m
e
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfie
l
ds
s
mall
p
oint
e
r to wiki page (wi
l
l
update al
o
ng
w
it
h
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfields
s
m
a
l
l update
commit
|
commitdiff
|
tree
2008-12-11
cjfields
update
s
commit
|
commitdiff
|
tree
2008-12-11
cjfields
return, not 'return undef'
commit
|
commitdiff
|
tree
2008-12-11
c
j
f
i
elds
re
t
urn, not
'return undef'
commit
|
commitdiff
|
tree
2008-12-11
cjfie
l
ds
[bug 2699]
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[
b
ug 26
9
9]
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[bug 270
7
]
commit
|
commitdiff
|
tree
2008-12-10
cjfi
e
ld
s
Remo
v
ing f
r
om HEAD (deprecate
d
for 1
.
6)
commit
|
commitdiff
|
tree
2008-12-10
cjfields
mini pod fix
commit
|
commitdiff
|
tree
2008-12-10
c
j
fields
update deprec
a
tion list
commit
|
commitdiff
|
tree
2008-12-10
c
jfields
r
e
move Bio::Gr
a
phic
s
(se
p
arate package n
o
w)
commit
|
commitdiff
|
tree
2008-12-10
c
j
f
i
e
l
ds
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-10
cjfields
Remove dependencies for Bio::Gr
a
phic
s
and dep
r
ecated
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Squash
w
a
r
n
i
n
g
commit
|
commitdiff
|
tree
2008-12-09
cjfields
dia
g
() only on verbose
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Fix last
l
oop tes
t
s, mov
e
some
to
c
an_ok
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Modify to test new t
e
mp c
l
ass
e
s and
ensure that added
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfields
update Ma
u
ricio's
e
mail
commit
|
commitdiff
|
tree
2008-12-08
cjfields
U
p
date Ro
y
's email
commit
|
commitdiff
|
tree
2008-12-08
cjfiel
d
s
Roy's email (
a
nd
b
i
o
p
erl
.
o
rg not bioperl
.
edu)
commit
|
commitdiff
|
tree
2008-12-08
cjfields
Updated e
m
ail
s
commit
|
commitdiff
|
tree
2008-12-07
c
jfields
[bug 2
6
99]
commit
|
commitdiff
|
tree
2008-12-05
cjfields
Need to
r
etrieve the t
r
ee for output
commit
|
commitdiff
|
tree
2008-12-05
c
jfield
s
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-04
cjfields
Make Target a tr
u
e
DBLink
commit
|
commitdiff
|
tree
2008-12-04
cjfields
Directory is n
o
longer needed (Heikki split this up
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cjfi
e
l
ds
add force_nse
tests
commit
|
commitdiff
|
tree
2008-12-03
cj
f
ields
leave ID undefin
e
d if it
i
sn't present, but
allow t
h
e
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Remove file
s
accidentl
y
a
dded from last
commit
commit
|
commitdiff
|
tree
2008-12-03
c
j
fields
Reorganize
T
o
o
ls tests (n
e
e
d
s some more splitting)
commit
|
commitdiff
|
tree
2008-12-03
c
jfields
Remove (tests are redundant,
in Consed
.
t
)
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Merge test
s
and r
e
m
ov
e
redundant file
commit
|
commitdiff
|
tree
2008-12-03
c
j
fields
Update test co
u
nt
commit
|
commitdiff
|
tree
2008-12-03
cjfie
l
d
s
Merge
tests
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Remove redundant file
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Rem
o
ve old files
commit
|
commitdiff
|
tree
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