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2019-02-11	Carnë Draug	SeqUtils.t: avoid deprecated usage of add_SeqFeature	commit \| commitdiff \| tree
2019-02-11	Carnë Draug	maint: mention removed methods in 2cbe4591d572 on Changes...	commit \| commitdiff \| tree
2019-02-11	Carnë Draug	Bio::Seq::SeqWithQuality: remove deprecated class	commit \| commitdiff \| tree
2019-02-11	Carnë Draug	Use /usr/bin/perl instead of env even on examples	commit \| commitdiff \| tree
2019-02-11	Carnë Draug	doc: fix POD in Bio::SeqIO::bsml so that man can handle it.	commit \| commitdiff \| tree
2019-02-11	Carnë Draug	lib/Bio/Tools/Run/README: remove file	commit \| commitdiff \| tree
2019-02-11	Carnë Draug	doc: add NAME section with abstract to all modules POD	commit \| commitdiff \| tree
2019-02-08	Carnë Draug	Bio::Symbol: move to its own distribution	commit \| commitdiff \| tree
2019-02-08	Carnë Draug	doc: fix typos on doc found by Debian's lintian	commit \| commitdiff \| tree
2019-02-07	Carnë Draug	Bio::Root::RootI->deprecated: fix when no version argument...	commit \| commitdiff \| tree
2019-02-07	Carnë Draug	Bio::Root::RootI: deprecate deprecated() method (issue...	commit \| commitdiff \| tree
2019-02-05	Carnë Draug	v1.7.4	commit \| commitdiff \| tree
2019-02-05	Carnë Draug	maint: do not include travis configuration on release	commit \| commitdiff \| tree
2019-02-05	Carnë Draug	maint: update Changes for upcoming release	commit \| commitdiff \| tree
2019-02-05	Carnë Draug	t/SeqFeature/Generic.t: fix typo on required module...	commit \| commitdiff \| tree
2019-02-05	Carnë Draug	Bio::Root::Test: fix test_network use of Test::RequiresInternet	commit \| commitdiff \| tree
2019-02-05	Carnë Draug	maint: fix repository links on metadata (issue #306)	commit \| commitdiff \| tree
2019-01-30	Carnë Draug	v1.7.3	commit \| commitdiff \| tree
2019-01-29	Carnë Draug	bin/bp_genbank2gff3: fix sorting by feature type (issue...	commit \| commitdiff \| tree
2019-01-29	Carnë Draug	Bio::SeqIO::lasergene: move to its own distribution	commit \| commitdiff \| tree
2018-10-03	Carnë Draug	Changes: more details and philosophy are on HACKING...	commit \| commitdiff \| tree
2018-10-03	Carnë Draug	Changes: more detailed complete list of modules/dependencies...	commit \| commitdiff \| tree
2018-10-01	Carnë Draug	lib/BioPerl.pm: start conversion of POD to make use...	commit \| commitdiff \| tree
2018-10-01	Carnë Draug	bin/bp_biofetch_genbank_proxy: move to Bio-DB-NCBIHelper	commit \| commitdiff \| tree
2018-10-01	Carnë Draug	Bio::DB::SwissProt: move to its own distribution	commit \| commitdiff \| tree
2018-10-01	Carnë Draug	Bio::DB::BioFetch: move to its own distribution	commit \| commitdiff \| tree
2018-09-30	Carnë Draug	Automatic handling of VERSION in all modules (issue...	commit \| commitdiff \| tree
2018-09-30	Carnë Draug	t/SeqFeature/Generic.t: fix failing tests (fixup fde603f22aa)	commit \| commitdiff \| tree
2018-09-30	Carnë Draug	bin/bp_fetch: move require of optional modules where...	commit \| commitdiff \| tree
2018-09-30	Carnë Draug	Bio::Map::* and Bio::MapIO::* : move into their own...	commit \| commitdiff \| tree
2018-09-30	Carnë Draug	Remove manipulation of @INC and use of lib - require...	commit \| commitdiff \| tree
2018-09-30	Carnë Draug	dist.ini: make Win32 a dependency for Windows only...	commit \| commitdiff \| tree
2018-09-29	Carnë Draug	Bio::SeqIO::agave: move to its own distribution	commit \| commitdiff \| tree
2018-09-29	Carnë Draug	Bio::SeqIO::chadoxml (and flybase_chadoxml): move to...	commit \| commitdiff \| tree
2018-09-29	Carnë Draug	maint: list Data::Stag::XMLWriter as dropped dependency	commit \| commitdiff \| tree
2018-09-29	Carnë Draug	Bio::SeqIO::chaosxml (and chaos): move to their own...	commit \| commitdiff \| tree
2018-09-28	Carnë Draug	Bio::SeqIO::strider: move into its own distribution	commit \| commitdiff \| tree
2018-09-28	Carnë Draug	Bio::Tools::Protparam: move to its own distribution	commit \| commitdiff \| tree
2018-09-28	Carnë Draug	maint: update and clean removed modules and dependencies...	commit \| commitdiff \| tree
2018-09-28	Carnë Draug	Bio::DB::SeqVersion: move into its own distribution	commit \| commitdiff \| tree
2018-09-28	Carnë Draug	Bio::Tools::SiRNA and related moved to separate distribution	commit \| commitdiff \| tree
2018-09-28	Carnë Draug	Bio::Tools::Analysis::Protein: move modules into their...	commit \| commitdiff \| tree
2018-09-28	Carnë Draug	Bio::Tools::Analysis::Protein::Scansite: move to separate...	commit \| commitdiff \| tree
2018-09-28	Carnë Draug	Bio::Tools::Analysis::Protein:ELM: move to separate...	commit \| commitdiff \| tree
2018-09-28	Carnë Draug	Bio::Tools::Analysis::DNA::ESEfinder: move to separate...	commit \| commitdiff \| tree
2018-09-28	Carnë Draug	Bio::DB::RefSeq, Bio::DB::EMBL, and subclasses of Bio...	commit \| commitdiff \| tree
2018-09-28	Carnë Draug	Bio::Taxonomy: move deprecated namespace to its own...	commit \| commitdiff \| tree
2018-09-28	Carnë Draug	lib/BioPerl.pm: convert line-ending dos2unix	commit \| commitdiff \| tree
2018-09-28	Carnë Draug	doc: update HACKING instructions with dzil instructions	commit \| commitdiff \| tree
2018-09-25	Carnë Draug	t/*: remove "use lib '.'" and t/lib/Error.pm	commit \| commitdiff \| tree
2018-09-25	Carnë Draug	Bio::DB::CUTG: move into its own distribution	commit \| commitdiff \| tree
2018-09-25	Carnë Draug	Bio::DB::Taxonomy::sqlite: move into its own distribution	commit \| commitdiff \| tree
2018-09-25	Carnë Draug	Bio::DB::GFF move into its own namespace (except Bio...	commit \| commitdiff \| tree
2018-09-25	Carnë Draug	Bio::DB::SeqFeature::* move namespace into its own...	commit \| commitdiff \| tree
2018-09-25	Carnë Draug	maint: update changes from 1f7b54a281a8	commit \| commitdiff \| tree
2018-09-25	Carnë Draug	Bio::Variation::* move namespace into its own distribution.	commit \| commitdiff \| tree
2018-09-24	Carnë Draug	Remove Bio::SeqIO support for abi, alf, ctf, exp, pln...	commit \| commitdiff \| tree
2018-09-24	Carnë Draug	Bio::Cluster and Bio::ClusterIO moved to their own...	commit \| commitdiff \| tree
2018-09-22	Carnë Draug	Bio::Phenotype::* move what's left of the namespace...	commit \| commitdiff \| tree
2018-09-22	Carnë Draug	maint: remove no longer used test data files.	commit \| commitdiff \| tree
2018-09-22	Carnë Draug	Bio::LiveSeq::* move whole namespace to its own distribution.	commit \| commitdiff \| tree
2018-09-17	Carnë Draug	maint: update gitignore rules	commit \| commitdiff \| tree
2018-09-17	Carnë Draug	maint: restructure to use Dist::Zilla	commit \| commitdiff \| tree
2018-09-17	Carnë Draug	t/AlignIO/AlignIO.t: fix number of tests in plan (fixup...	commit \| commitdiff \| tree
2018-09-17	Carnë Draug	t/Annotation/Annotation.t: remove test for Bio::SeqFeature...	commit \| commitdiff \| tree
2018-09-17	Carnë Draug	Bio/Tools/Run/Phylo/PhyloBase.pm: bring base class...	commit \| commitdiff \| tree
2018-09-17	Carnë Draug	Bio/Tools/Phylo/Gumby.pm: move to its own distribution	commit \| commitdiff \| tree
2018-09-17	Carnë Draug	DB/SeqFeature/Store/berkeleydb3.pm: fix errors so it...	commit \| commitdiff \| tree
2018-09-17	Carnë Draug	Adjust tests indirectly making use of Bio::AlignIO...	commit \| commitdiff \| tree
2018-09-17	Carnë Draug	bp_process_wormbase: move program to new Bio-DB-Ace...	commit \| commitdiff \| tree
2018-09-17	Carnë Draug	bp_netinstall: remove out of date program	commit \| commitdiff \| tree
2018-09-17	Carnë Draug	Move modules dependent on Bio::Ext::Align into defunct...	commit \| commitdiff \| tree
2018-09-17	Carnë Draug	Bio::DB::Expression: move to defunct bioperl-microarray	commit \| commitdiff \| tree
2018-09-16	Carnë Draug	maint: 644 permissions for almost all files	commit \| commitdiff \| tree
2018-09-16	Carnë Draug	maint: set all source code with utf-8 encoding	commit \| commitdiff \| tree
2018-09-16	Carnë Draug	maint: remove maintainer out of date files	commit \| commitdiff \| tree
2018-09-16	Carnë Draug	ide: remove module templates - no longer needed after...	commit \| commitdiff \| tree
2018-09-16	Carnë Draug	ide/bioperl-mode: into its own repository to be developed...	commit \| commitdiff \| tree
2018-09-16	Carnë Draug	maint: remove bioperl-mode release tarballs from version...	commit \| commitdiff \| tree
2018-09-15	Carnë Draug	Bio::Index::Abstract->_type_and_version: check type...	commit \| commitdiff \| tree
2018-09-15	Carnë Draug	t/LocalDB/Index/BlastTable.t: use tempdir to avoid...	commit \| commitdiff \| tree
2018-09-15	Carnë Draug	t/LocalDB/Index/Blast.t: create test tempfiles within...	commit \| commitdiff \| tree
2018-09-15	Carnë Draug	maint: remove unused test data files	commit \| commitdiff \| tree
2018-09-14	Carnë Draug	Remove AlignIO and Index stockholm modules to new Bio...	commit \| commitdiff \| tree
2018-09-14	Carnë Draug	Bio::DB::Universal: move into its own distribution	commit \| commitdiff \| tree
2018-09-14	Carnë Draug	maint: simplify README to cover simple install instructions.	commit \| commitdiff \| tree
2018-09-13	Carnë Draug	Bring base classes from BioPerl-run back to BioPerl.	commit \| commitdiff \| tree
2018-09-13	Carnë Draug	Remove use of Bio::Perl which has been moved to Bio...	commit \| commitdiff \| tree
2018-09-13	Carnë Draug	Bio::DB::MeSH move to its own distribution.	commit \| commitdiff \| tree
2018-09-13	Carnë Draug	Move HMMER related modules, tests, and programs to...	commit \| commitdiff \| tree
2018-09-13	Carnë Draug	Bio::DB::TFBS namespace has been moved to its own distributi...	commit \| commitdiff \| tree
2018-09-13	Carnë Draug	Bio::DB::HIV and related modules and scripts moved...	commit \| commitdiff \| tree
2018-09-12	Carnë Draug	Bio::Align::Graphics: move into its own distribution...	commit \| commitdiff \| tree
2018-09-12	Carnë Draug	Bio::Tools::Run::RemoteBlast: move into a new distribution...	commit \| commitdiff \| tree
2018-09-12	Carnë Draug	Bio::Perl: move its own distribution named Bio-Procedural	commit \| commitdiff \| tree
2018-09-12	Carnë Draug	Bio::MolEvol::CodonModel: move into it separate repo...	commit \| commitdiff \| tree
2018-09-12	Carnë Draug	Bio::SeqIO::entrezgene: move to existing Bio-ASN1-entrezgene...	commit \| commitdiff \| tree
2018-09-11	Carnë Draug	Bio/Restriction/*: move to another repo with same name.	commit \| commitdiff \| tree
2018-09-11	Carnë Draug	Bio/Tools/Gel.pm: move to another repo with same name.	commit \| commitdiff \| tree
2018-09-11	Carnë Draug	Bio/SeqEvolution/*: move to another repo with same...	commit \| commitdiff \| tree
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