Bio::DB::GFF move into its own namespace (except Bio::DB::GFF::Util)
commit522684aed5910492f72c70799339c6f254cd9ece
authorCarnë Draug <carandraug+dev@gmail.com>
Tue, 25 Sep 2018 17:18:11 +0000 (25 18:18 +0100)
committerCarnë Draug <carandraug+dev@gmail.com>
Tue, 25 Sep 2018 17:18:11 +0000 (25 18:18 +0100)
tree6205b2996c685c53e43f2b11300fbcf08af84248
parent3a0084a248643776fe6a091602abc9e97fea2437
Bio::DB::GFF move into its own namespace (except Bio::DB::GFF::Util)

We don't move the Bio::DB::GFF::Util because it doesn't make use
of the rest Bio::DB::GFF (it does not even expect them as arguments)
and is used in Bio::SeqFeature::Collection.
54 files changed:
Changes
bin/bp_bulk_load_gff [deleted file]
bin/bp_das_server [deleted file]
bin/bp_fast_load_gff [deleted file]
bin/bp_genbank2gff [deleted file]
bin/bp_generate_histogram [deleted file]
bin/bp_load_gff [deleted file]
bin/bp_meta_gff [deleted file]
lib/Bio/DB/GFF.pm [deleted file]
lib/Bio/DB/GFF/Adaptor/berkeleydb.pm [deleted file]
lib/Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm [deleted file]
lib/Bio/DB/GFF/Adaptor/biofetch.pm [deleted file]
lib/Bio/DB/GFF/Adaptor/biofetch_oracle.pm [deleted file]
lib/Bio/DB/GFF/Adaptor/dbi.pm [deleted file]
lib/Bio/DB/GFF/Adaptor/dbi/caching_handle.pm [deleted file]
lib/Bio/DB/GFF/Adaptor/dbi/iterator.pm [deleted file]
lib/Bio/DB/GFF/Adaptor/dbi/mysql.pm [deleted file]
lib/Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm [deleted file]
lib/Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm [deleted file]
lib/Bio/DB/GFF/Adaptor/dbi/oracle.pm [deleted file]
lib/Bio/DB/GFF/Adaptor/dbi/pg.pm [deleted file]
lib/Bio/DB/GFF/Adaptor/dbi/pg_fts.pm [deleted file]
lib/Bio/DB/GFF/Adaptor/memory.pm [deleted file]
lib/Bio/DB/GFF/Adaptor/memory/feature_serializer.pm [deleted file]
lib/Bio/DB/GFF/Adaptor/memory/iterator.pm [deleted file]
lib/Bio/DB/GFF/Aggregator.pm [deleted file]
lib/Bio/DB/GFF/Aggregator/alignment.pm [deleted file]
lib/Bio/DB/GFF/Aggregator/clone.pm [deleted file]
lib/Bio/DB/GFF/Aggregator/coding.pm [deleted file]
lib/Bio/DB/GFF/Aggregator/gene.pm [deleted file]
lib/Bio/DB/GFF/Aggregator/match.pm [deleted file]
lib/Bio/DB/GFF/Aggregator/none.pm [deleted file]
lib/Bio/DB/GFF/Aggregator/orf.pm [deleted file]
lib/Bio/DB/GFF/Aggregator/processed_transcript.pm [deleted file]
lib/Bio/DB/GFF/Aggregator/so_transcript.pm [deleted file]
lib/Bio/DB/GFF/Aggregator/transcript.pm [deleted file]
lib/Bio/DB/GFF/Aggregator/ucsc_acembly.pm [deleted file]
lib/Bio/DB/GFF/Aggregator/ucsc_ensgene.pm [deleted file]
lib/Bio/DB/GFF/Aggregator/ucsc_genscan.pm [deleted file]
lib/Bio/DB/GFF/Aggregator/ucsc_refgene.pm [deleted file]
lib/Bio/DB/GFF/Aggregator/ucsc_sanger22.pm [deleted file]
lib/Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm [deleted file]
lib/Bio/DB/GFF/Aggregator/ucsc_softberry.pm [deleted file]
lib/Bio/DB/GFF/Aggregator/ucsc_twinscan.pm [deleted file]
lib/Bio/DB/GFF/Aggregator/ucsc_unigene.pm [deleted file]
lib/Bio/DB/GFF/Featname.pm [deleted file]
lib/Bio/DB/GFF/Feature.pm [deleted file]
lib/Bio/DB/GFF/Homol.pm [deleted file]
lib/Bio/DB/GFF/RelSegment.pm [deleted file]
lib/Bio/DB/GFF/Segment.pm [deleted file]
lib/Bio/DB/GFF/Typename.pm [deleted file]
t/LocalDB/BioDBGFF.t [deleted file]
t/data/biodbgff/test.gff [deleted file]
t/data/biodbgff/test.gff3 [deleted file]